Strain Fitness in Variovorax sp. SCN45 around GFF4801

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4800 and GFF4801 are separated by 85 nucleotidesGFF4801 and GFF4802 are separated by 82 nucleotidesGFF4802 and GFF4803 are separated by 153 nucleotides GFF4800 - DNA mismatch repair protein MutL, at 170,136 to 172,061 GFF4800 GFF4801 - DedA protein, at 172,147 to 172,815 GFF4801 GFF4802 - Osmotically-inducible lipoprotein OsmB, at 172,898 to 173,185 GFF4802 GFF4803 - N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28), at 173,339 to 174,829 GFF4803 Position (kb) 172 173Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 171.175 kb on + strand, within GFF4800at 171.175 kb on + strand, within GFF4800at 171.175 kb on + strand, within GFF4800at 171.176 kb on - strand, within GFF4800at 171.176 kb on - strand, within GFF4800at 171.176 kb on - strand, within GFF4800at 171.184 kb on + strand, within GFF4800at 171.185 kb on - strand, within GFF4800at 171.185 kb on - strand, within GFF4800at 171.185 kb on - strand, within GFF4800at 171.185 kb on - strand, within GFF4800at 171.220 kb on + strand, within GFF4800at 171.277 kb on + strand, within GFF4800at 171.277 kb on + strand, within GFF4800at 171.277 kb on + strand, within GFF4800at 171.277 kb on + strand, within GFF4800at 171.277 kb on + strand, within GFF4800at 171.277 kb on + strand, within GFF4800at 171.277 kb on + strand, within GFF4800at 171.277 kb on + strand, within GFF4800at 171.277 kb on + strand, within GFF4800at 171.277 kb on + strand, within GFF4800at 171.278 kb on - strand, within GFF4800at 171.278 kb on - strand, within GFF4800at 171.278 kb on - strand, within GFF4800at 171.278 kb on - strand, within GFF4800at 171.278 kb on - strand, within GFF4800at 171.278 kb on - strand, within GFF4800at 171.278 kb on - strand, within GFF4800at 171.278 kb on - strand, within GFF4800at 171.278 kb on - strand, within GFF4800at 171.278 kb on - strand, within GFF4800at 171.278 kb on - strand, within GFF4800at 171.278 kb on - strand, within GFF4800at 171.278 kb on - strand, within GFF4800at 171.278 kb on - strand, within GFF4800at 171.278 kb on - strand, within GFF4800at 171.836 kb on + strand, within GFF4800at 171.836 kb on + strand, within GFF4800at 171.836 kb on + strand, within GFF4800at 172.072 kb on + strandat 172.072 kb on + strandat 172.073 kb on - strandat 172.073 kb on - strandat 172.136 kb on - strandat 172.136 kb on - strandat 172.234 kb on + strand, within GFF4801at 172.234 kb on + strand, within GFF4801at 172.234 kb on + strand, within GFF4801at 172.235 kb on - strand, within GFF4801at 172.235 kb on - strand, within GFF4801at 172.235 kb on - strand, within GFF4801at 172.251 kb on + strand, within GFF4801at 172.251 kb on + strand, within GFF4801at 172.251 kb on + strand, within GFF4801at 172.252 kb on - strand, within GFF4801at 172.252 kb on - strand, within GFF4801at 172.352 kb on - strand, within GFF4801at 172.376 kb on + strand, within GFF4801at 172.408 kb on + strand, within GFF4801at 172.409 kb on - strand, within GFF4801at 172.409 kb on - strand, within GFF4801at 172.409 kb on - strand, within GFF4801at 172.409 kb on - strand, within GFF4801at 172.409 kb on - strand, within GFF4801at 172.423 kb on + strand, within GFF4801at 172.423 kb on + strand, within GFF4801at 172.424 kb on - strand, within GFF4801at 172.424 kb on - strand, within GFF4801at 172.424 kb on - strand, within GFF4801at 172.501 kb on + strand, within GFF4801at 172.501 kb on + strand, within GFF4801at 172.501 kb on + strand, within GFF4801at 172.502 kb on - strand, within GFF4801at 172.510 kb on + strand, within GFF4801at 172.511 kb on - strand, within GFF4801at 172.615 kb on + strand, within GFF4801at 172.615 kb on + strand, within GFF4801at 172.615 kb on + strand, within GFF4801at 172.616 kb on - strand, within GFF4801at 172.616 kb on - strand, within GFF4801at 172.616 kb on - strand, within GFF4801at 172.666 kb on + strand, within GFF4801at 172.667 kb on - strand, within GFF4801at 172.667 kb on - strand, within GFF4801at 172.753 kb on + strandat 172.753 kb on + strandat 172.753 kb on + strandat 172.753 kb on + strandat 172.753 kb on + strandat 172.753 kb on + strandat 172.753 kb on + strandat 172.753 kb on + strandat 172.753 kb on + strandat 172.753 kb on + strandat 172.753 kb on + strandat 172.754 kb on - strandat 172.754 kb on - strandat 172.754 kb on - strandat 172.754 kb on - strandat 172.754 kb on - strandat 172.754 kb on - strandat 172.754 kb on - strandat 172.754 kb on - strandat 172.902 kb on + strandat 172.902 kb on + strandat 172.902 kb on + strandat 172.902 kb on + strandat 172.902 kb on + strandat 172.902 kb on + strandat 172.903 kb on - strandat 172.903 kb on - strandat 172.903 kb on - strandat 172.903 kb on - strandat 172.923 kb on + strandat 172.924 kb on + strandat 172.926 kb on + strandat 172.926 kb on + strandat 172.927 kb on - strand, within GFF4802at 172.927 kb on - strand, within GFF4802at 172.959 kb on + strand, within GFF4802at 172.959 kb on + strand, within GFF4802at 172.959 kb on + strand, within GFF4802at 172.959 kb on + strand, within GFF4802at 172.959 kb on + strand, within GFF4802at 172.959 kb on + strand, within GFF4802at 172.959 kb on + strand, within GFF4802at 172.959 kb on + strand, within GFF4802at 172.959 kb on + strand, within GFF4802at 172.960 kb on - strand, within GFF4802at 172.960 kb on - strand, within GFF4802at 172.960 kb on - strand, within GFF4802at 172.960 kb on - strand, within GFF4802at 172.960 kb on - strand, within GFF4802at 172.960 kb on - strand, within GFF4802at 172.960 kb on - strand, within GFF4802at 172.960 kb on - strand, within GFF4802at 172.960 kb on - strand, within GFF4802at 172.960 kb on - strand, within GFF4802at 172.960 kb on - strand, within GFF4802at 172.960 kb on - strand, within GFF4802at 172.962 kb on + strand, within GFF4802at 172.962 kb on + strand, within GFF4802at 172.962 kb on + strand, within GFF4802at 172.962 kb on + strand, within GFF4802at 172.962 kb on + strand, within GFF4802at 172.962 kb on + strand, within GFF4802at 172.962 kb on + strand, within GFF4802at 172.962 kb on + strand, within GFF4802at 172.962 kb on + strand, within GFF4802at 172.962 kb on + strand, within GFF4802at 172.962 kb on + strand, within GFF4802at 172.963 kb on - strand, within GFF4802at 172.963 kb on - strand, within GFF4802at 172.963 kb on - strand, within GFF4802at 172.963 kb on - strand, within GFF4802at 172.963 kb on - strand, within GFF4802at 173.059 kb on + strand, within GFF4802at 173.078 kb on + strand, within GFF4802at 173.078 kb on + strand, within GFF4802at 173.134 kb on + strand, within GFF4802at 173.235 kb on + strandat 173.235 kb on + strandat 173.236 kb on - strandat 173.236 kb on - strandat 173.236 kb on - strandat 173.245 kb on + strandat 173.245 kb on + strandat 173.245 kb on + strandat 173.245 kb on + strandat 173.245 kb on + strandat 173.245 kb on + strandat 173.245 kb on + strandat 173.246 kb on - strandat 173.246 kb on - strandat 173.246 kb on - strandat 173.246 kb on - strandat 173.246 kb on - strandat 173.246 kb on - strandat 173.246 kb on - strandat 173.318 kb on + strandat 173.382 kb on + strandat 173.383 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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171,175 + GFF4800 0.54 -0.9
171,175 + GFF4800 0.54 -0.3
171,175 + GFF4800 0.54 -1.8
171,176 - GFF4800 0.54 -0.1
171,176 - GFF4800 0.54 +0.8
171,176 - GFF4800 0.54 -0.1
171,184 + GFF4800 0.54 -0.2
171,185 - GFF4800 0.54 -1.3
171,185 - GFF4800 0.54 +2.7
171,185 - GFF4800 0.54 +0.2
171,185 - GFF4800 0.54 -1.4
171,220 + GFF4800 0.56 +0.1
171,277 + GFF4800 0.59 +0.3
171,277 + GFF4800 0.59 -0.3
171,277 + GFF4800 0.59 +0.3
171,277 + GFF4800 0.59 +0.0
171,277 + GFF4800 0.59 +0.1
171,277 + GFF4800 0.59 -0.8
171,277 + GFF4800 0.59 -1.7
171,277 + GFF4800 0.59 -0.0
171,277 + GFF4800 0.59 +0.2
171,277 + GFF4800 0.59 -0.2
171,278 - GFF4800 0.59 +1.4
171,278 - GFF4800 0.59 -0.2
171,278 - GFF4800 0.59 -0.3
171,278 - GFF4800 0.59 +0.0
171,278 - GFF4800 0.59 +1.0
171,278 - GFF4800 0.59 -1.1
171,278 - GFF4800 0.59 +0.3
171,278 - GFF4800 0.59 -0.1
171,278 - GFF4800 0.59 +0.7
171,278 - GFF4800 0.59 -1.2
171,278 - GFF4800 0.59 +0.1
171,278 - GFF4800 0.59 +0.8
171,278 - GFF4800 0.59 +0.7
171,278 - GFF4800 0.59 +0.2
171,278 - GFF4800 0.59 -0.5
171,836 + GFF4800 0.88 +1.2
171,836 + GFF4800 0.88 +0.2
171,836 + GFF4800 0.88 -1.2
172,072 + -0.3
172,072 + -0.4
172,073 - -0.3
172,073 - -0.2
172,136 - -0.4
172,136 - -1.1
172,234 + GFF4801 0.13 -0.2
172,234 + GFF4801 0.13 -1.8
172,234 + GFF4801 0.13 -0.2
172,235 - GFF4801 0.13 -1.2
172,235 - GFF4801 0.13 -1.4
172,235 - GFF4801 0.13 -1.3
172,251 + GFF4801 0.16 -0.8
172,251 + GFF4801 0.16 +0.7
172,251 + GFF4801 0.16 -0.7
172,252 - GFF4801 0.16 -0.3
172,252 - GFF4801 0.16 -0.9
172,352 - GFF4801 0.31 -1.1
172,376 + GFF4801 0.34 -1.8
172,408 + GFF4801 0.39 -0.2
172,409 - GFF4801 0.39 -1.2
172,409 - GFF4801 0.39 +0.4
172,409 - GFF4801 0.39 +0.3
172,409 - GFF4801 0.39 -0.2
172,409 - GFF4801 0.39 +1.1
172,423 + GFF4801 0.41 +0.7
172,423 + GFF4801 0.41 -1.7
172,424 - GFF4801 0.41 -0.4
172,424 - GFF4801 0.41 -0.9
172,424 - GFF4801 0.41 -0.3
172,501 + GFF4801 0.53 +0.7
172,501 + GFF4801 0.53 -1.2
172,501 + GFF4801 0.53 -0.3
172,502 - GFF4801 0.53 -0.7
172,510 + GFF4801 0.54 -0.0
172,511 - GFF4801 0.54 +0.0
172,615 + GFF4801 0.70 -1.2
172,615 + GFF4801 0.70 -1.5
172,615 + GFF4801 0.70 +0.5
172,616 - GFF4801 0.70 +0.3
172,616 - GFF4801 0.70 -1.0
172,616 - GFF4801 0.70 +1.7
172,666 + GFF4801 0.78 -0.2
172,667 - GFF4801 0.78 -1.3
172,667 - GFF4801 0.78 -0.1
172,753 + +0.8
172,753 + +0.1
172,753 + -0.3
172,753 + +0.3
172,753 + -0.6
172,753 + -0.4
172,753 + -0.5
172,753 + +1.4
172,753 + -1.3
172,753 + -0.8
172,753 + -0.6
172,754 - -1.0
172,754 - +1.4
172,754 - -1.3
172,754 - -0.8
172,754 - -0.7
172,754 - -0.0
172,754 - +0.8
172,754 - +0.7
172,902 + +3.8
172,902 + +0.3
172,902 + -0.2
172,902 + -1.9
172,902 + -0.7
172,902 + +0.8
172,903 - +0.9
172,903 - -0.3
172,903 - +0.7
172,903 - -0.2
172,923 + -0.4
172,924 + +1.7
172,926 + -0.2
172,926 + -0.8
172,927 - GFF4802 0.10 -0.1
172,927 - GFF4802 0.10 -1.5
172,959 + GFF4802 0.21 -0.4
172,959 + GFF4802 0.21 -0.7
172,959 + GFF4802 0.21 -0.1
172,959 + GFF4802 0.21 -0.4
172,959 + GFF4802 0.21 -0.4
172,959 + GFF4802 0.21 -0.2
172,959 + GFF4802 0.21 -0.1
172,959 + GFF4802 0.21 -0.2
172,959 + GFF4802 0.21 -1.2
172,960 - GFF4802 0.22 +0.4
172,960 - GFF4802 0.22 -1.3
172,960 - GFF4802 0.22 -0.7
172,960 - GFF4802 0.22 -0.7
172,960 - GFF4802 0.22 -0.7
172,960 - GFF4802 0.22 -0.5
172,960 - GFF4802 0.22 -1.3
172,960 - GFF4802 0.22 -0.1
172,960 - GFF4802 0.22 -1.2
172,960 - GFF4802 0.22 +0.5
172,960 - GFF4802 0.22 -1.2
172,960 - GFF4802 0.22 -0.2
172,962 + GFF4802 0.22 -0.0
172,962 + GFF4802 0.22 -0.2
172,962 + GFF4802 0.22 -0.0
172,962 + GFF4802 0.22 -1.0
172,962 + GFF4802 0.22 -0.5
172,962 + GFF4802 0.22 -0.4
172,962 + GFF4802 0.22 -2.0
172,962 + GFF4802 0.22 +2.2
172,962 + GFF4802 0.22 +0.1
172,962 + GFF4802 0.22 +0.2
172,962 + GFF4802 0.22 +0.7
172,963 - GFF4802 0.23 -0.1
172,963 - GFF4802 0.23 +1.3
172,963 - GFF4802 0.23 -0.9
172,963 - GFF4802 0.23 -0.4
172,963 - GFF4802 0.23 -2.7
173,059 + GFF4802 0.56 +0.3
173,078 + GFF4802 0.62 +1.3
173,078 + GFF4802 0.62 +1.8
173,134 + GFF4802 0.82 -1.0
173,235 + -0.1
173,235 + -0.6
173,236 - +0.3
173,236 - +0.1
173,236 - +0.1
173,245 + +0.2
173,245 + -0.2
173,245 + -0.2
173,245 + +0.1
173,245 + -1.9
173,245 + -2.2
173,245 + +1.3
173,246 - -0.2
173,246 - -0.9
173,246 - -0.9
173,246 - -1.2
173,246 - -0.5
173,246 - -0.5
173,246 - -2.7
173,318 + -0.7
173,382 + -0.5
173,383 - -2.4

Or see this region's nucleotide sequence