Strain Fitness in Variovorax sp. SCN45 around GFF4766

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4763 and GFF4764 are separated by 15 nucleotidesGFF4764 and GFF4765 are separated by 7 nucleotidesGFF4765 and GFF4766 are separated by 7 nucleotidesGFF4766 and GFF4767 are separated by 24 nucleotides GFF4763 - NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3), at 130,397 to 131,884 GFF4763 GFF4764 - Putative transmembrane protein, at 131,900 to 132,205 GFF4764 GFF4765 - ADP-ribose pyrophosphatase (EC 3.6.1.13), at 132,213 to 132,830 GFF4765 GFF4766 - identified by similarity to GB:AAK22812.1; match to protein family HMM PF06676, at 132,838 to 133,302 GFF4766 GFF4767 - Efflux ABC transporter, permease/ATP-binding protein, at 133,327 to 135,087 GFF4767 Position (kb) 132 133 134Strain fitness (log2 ratio) -2 -1 0 1 2at 131.852 kb on + strandat 132.126 kb on - strand, within GFF4764at 132.341 kb on + strand, within GFF4765at 132.341 kb on + strand, within GFF4765at 132.341 kb on + strand, within GFF4765at 132.342 kb on - strand, within GFF4765at 132.342 kb on - strand, within GFF4765at 132.342 kb on - strand, within GFF4765at 132.342 kb on - strand, within GFF4765at 132.342 kb on - strand, within GFF4765at 132.342 kb on - strand, within GFF4765at 132.357 kb on + strand, within GFF4765at 132.358 kb on - strand, within GFF4765at 132.358 kb on - strand, within GFF4765at 132.538 kb on - strand, within GFF4765at 132.538 kb on - strand, within GFF4765at 132.588 kb on + strand, within GFF4765at 132.589 kb on - strand, within GFF4765at 132.608 kb on + strand, within GFF4765at 132.608 kb on + strand, within GFF4765at 132.608 kb on + strand, within GFF4765at 132.608 kb on + strand, within GFF4765at 132.608 kb on + strand, within GFF4765at 132.608 kb on + strand, within GFF4765at 132.608 kb on + strand, within GFF4765at 132.608 kb on + strand, within GFF4765at 132.608 kb on + strand, within GFF4765at 132.608 kb on + strand, within GFF4765at 132.608 kb on + strand, within GFF4765at 132.609 kb on - strand, within GFF4765at 132.609 kb on - strand, within GFF4765at 132.609 kb on - strand, within GFF4765at 132.609 kb on - strand, within GFF4765at 132.609 kb on - strand, within GFF4765at 132.609 kb on - strand, within GFF4765at 132.609 kb on - strand, within GFF4765at 132.609 kb on - strand, within GFF4765at 132.609 kb on - strand, within GFF4765at 132.609 kb on - strand, within GFF4765at 132.609 kb on - strand, within GFF4765at 132.612 kb on + strand, within GFF4765at 132.612 kb on + strand, within GFF4765at 132.612 kb on + strand, within GFF4765at 132.613 kb on - strand, within GFF4765at 132.613 kb on - strand, within GFF4765at 132.613 kb on - strand, within GFF4765at 132.613 kb on - strand, within GFF4765at 132.613 kb on - strand, within GFF4765at 133.174 kb on + strand, within GFF4766at 133.300 kb on + strandat 133.300 kb on + strandat 133.300 kb on + strandat 133.301 kb on - strandat 133.301 kb on - strandat 133.303 kb on + strandat 133.303 kb on + strandat 133.303 kb on + strandat 133.303 kb on + strandat 133.303 kb on + strandat 133.304 kb on - strandat 133.304 kb on - strandat 133.304 kb on - strandat 133.304 kb on - strandat 133.304 kb on - strandat 133.304 kb on - strandat 133.361 kb on + strandat 133.361 kb on + strandat 133.362 kb on - strandat 133.362 kb on - strandat 133.667 kb on + strand, within GFF4767at 133.668 kb on - strand, within GFF4767at 133.668 kb on - strand, within GFF4767at 133.870 kb on + strand, within GFF4767at 133.895 kb on + strand, within GFF4767at 133.895 kb on + strand, within GFF4767at 133.895 kb on + strand, within GFF4767at 133.895 kb on + strand, within GFF4767at 133.895 kb on + strand, within GFF4767at 133.896 kb on - strand, within GFF4767at 133.896 kb on - strand, within GFF4767at 133.896 kb on - strand, within GFF4767at 133.899 kb on - strand, within GFF4767at 134.025 kb on - strand, within GFF4767at 134.174 kb on + strand, within GFF4767at 134.174 kb on + strand, within GFF4767at 134.174 kb on + strand, within GFF4767at 134.174 kb on + strand, within GFF4767at 134.174 kb on + strand, within GFF4767at 134.174 kb on + strand, within GFF4767at 134.175 kb on - strand, within GFF4767at 134.219 kb on + strand, within GFF4767at 134.219 kb on + strand, within GFF4767at 134.219 kb on + strand, within GFF4767at 134.220 kb on - strand, within GFF4767at 134.220 kb on - strand, within GFF4767at 134.220 kb on - strand, within GFF4767at 134.220 kb on - strand, within GFF4767at 134.220 kb on - strand, within GFF4767at 134.285 kb on + strand, within GFF4767at 134.286 kb on - strand, within GFF4767at 134.286 kb on - strand, within GFF4767at 134.286 kb on - strand, within GFF4767

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
131,852 + +1.2
132,126 - GFF4764 0.74 -0.9
132,341 + GFF4765 0.21 -0.5
132,341 + GFF4765 0.21 +0.8
132,341 + GFF4765 0.21 -0.8
132,342 - GFF4765 0.21 +0.5
132,342 - GFF4765 0.21 -0.3
132,342 - GFF4765 0.21 -0.3
132,342 - GFF4765 0.21 +1.4
132,342 - GFF4765 0.21 +0.7
132,342 - GFF4765 0.21 -0.1
132,357 + GFF4765 0.23 -0.4
132,358 - GFF4765 0.23 +0.1
132,358 - GFF4765 0.23 -0.8
132,538 - GFF4765 0.53 +0.7
132,538 - GFF4765 0.53 +0.1
132,588 + GFF4765 0.61 -0.2
132,589 - GFF4765 0.61 -0.4
132,608 + GFF4765 0.64 -0.6
132,608 + GFF4765 0.64 -0.6
132,608 + GFF4765 0.64 -0.3
132,608 + GFF4765 0.64 -1.0
132,608 + GFF4765 0.64 -0.3
132,608 + GFF4765 0.64 +0.1
132,608 + GFF4765 0.64 -0.5
132,608 + GFF4765 0.64 -1.3
132,608 + GFF4765 0.64 +0.9
132,608 + GFF4765 0.64 -0.8
132,608 + GFF4765 0.64 -0.3
132,609 - GFF4765 0.64 -0.1
132,609 - GFF4765 0.64 +0.5
132,609 - GFF4765 0.64 +0.3
132,609 - GFF4765 0.64 -0.2
132,609 - GFF4765 0.64 -0.8
132,609 - GFF4765 0.64 +0.4
132,609 - GFF4765 0.64 +0.4
132,609 - GFF4765 0.64 -1.5
132,609 - GFF4765 0.64 +0.9
132,609 - GFF4765 0.64 +0.4
132,609 - GFF4765 0.64 -0.9
132,612 + GFF4765 0.65 +1.7
132,612 + GFF4765 0.65 +2.7
132,612 + GFF4765 0.65 -0.6
132,613 - GFF4765 0.65 -0.5
132,613 - GFF4765 0.65 -0.5
132,613 - GFF4765 0.65 +0.7
132,613 - GFF4765 0.65 -0.8
132,613 - GFF4765 0.65 -0.4
133,174 + GFF4766 0.72 +0.5
133,300 + -0.3
133,300 + -0.3
133,300 + -0.2
133,301 - -0.8
133,301 - -0.5
133,303 + -0.8
133,303 + +0.2
133,303 + +0.2
133,303 + -0.0
133,303 + -0.0
133,304 - +1.1
133,304 - +0.1
133,304 - +0.7
133,304 - +0.2
133,304 - +0.3
133,304 - +0.1
133,361 + -1.3
133,361 + +0.2
133,362 - +0.2
133,362 - -0.9
133,667 + GFF4767 0.19 -0.8
133,668 - GFF4767 0.19 +0.4
133,668 - GFF4767 0.19 -0.7
133,870 + GFF4767 0.31 +0.1
133,895 + GFF4767 0.32 -0.8
133,895 + GFF4767 0.32 -1.0
133,895 + GFF4767 0.32 +0.3
133,895 + GFF4767 0.32 +0.1
133,895 + GFF4767 0.32 -0.3
133,896 - GFF4767 0.32 -0.5
133,896 - GFF4767 0.32 -0.2
133,896 - GFF4767 0.32 -1.4
133,899 - GFF4767 0.32 -0.8
134,025 - GFF4767 0.40 +0.4
134,174 + GFF4767 0.48 -0.2
134,174 + GFF4767 0.48 -1.0
134,174 + GFF4767 0.48 +0.1
134,174 + GFF4767 0.48 -1.3
134,174 + GFF4767 0.48 -0.3
134,174 + GFF4767 0.48 +0.2
134,175 - GFF4767 0.48 +0.1
134,219 + GFF4767 0.51 -0.3
134,219 + GFF4767 0.51 +1.1
134,219 + GFF4767 0.51 -0.3
134,220 - GFF4767 0.51 -2.3
134,220 - GFF4767 0.51 +1.2
134,220 - GFF4767 0.51 +0.1
134,220 - GFF4767 0.51 -0.9
134,220 - GFF4767 0.51 -1.4
134,285 + GFF4767 0.54 +0.2
134,286 - GFF4767 0.54 +0.1
134,286 - GFF4767 0.54 -0.5
134,286 - GFF4767 0.54 -0.1

Or see this region's nucleotide sequence