Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF471 and GFF472 are separated by 116 nucleotides GFF472 and GFF473 are separated by 74 nucleotides GFF473 and GFF474 are separated by 24 nucleotides GFF474 and GFF475 are separated by 137 nucleotides
GFF471 - Dihydroxy-acid dehydratase (EC 4.2.1.9), at 508,942 to 510,636
GFF471
GFF472 - hypothetical protein, at 510,753 to 511,052
GFF472
GFF473 - Cytochrome c551/c552, at 511,127 to 511,426
GFF473
GFF474 - FIG00537682: hypothetical protein, at 511,451 to 511,966
GFF474
GFF475 - Acetyl-CoA synthetase (EC 6.2.1.1), at 512,104 to 514,101
GFF475
Position (kb) 511
512 Strain fitness (log2 ratio) -2
-1
0
1
2 at 510.647 kb on + strand at 510.647 kb on + strand at 510.647 kb on + strand at 510.647 kb on + strand at 510.647 kb on + strand at 510.647 kb on + strand at 510.647 kb on + strand at 510.648 kb on - strand at 510.648 kb on - strand at 510.648 kb on - strand at 510.648 kb on - strand at 510.648 kb on - strand at 510.648 kb on - strand at 510.648 kb on - strand at 510.648 kb on - strand at 510.753 kb on + strand at 510.754 kb on + strand at 510.754 kb on + strand at 510.754 kb on + strand at 510.860 kb on + strand, within GFF472 at 510.860 kb on + strand, within GFF472 at 510.860 kb on + strand, within GFF472 at 510.860 kb on + strand, within GFF472 at 510.860 kb on + strand, within GFF472 at 510.860 kb on + strand, within GFF472 at 510.861 kb on - strand, within GFF472 at 510.861 kb on - strand, within GFF472 at 510.861 kb on - strand, within GFF472 at 510.861 kb on - strand, within GFF472 at 510.861 kb on - strand, within GFF472 at 510.861 kb on - strand, within GFF472 at 510.861 kb on - strand, within GFF472 at 510.861 kb on - strand, within GFF472 at 510.862 kb on + strand, within GFF472 at 510.862 kb on + strand, within GFF472 at 510.863 kb on - strand, within GFF472 at 510.961 kb on + strand, within GFF472 at 510.961 kb on + strand, within GFF472 at 510.962 kb on - strand, within GFF472 at 510.962 kb on - strand, within GFF472 at 510.962 kb on - strand, within GFF472 at 511.024 kb on + strand at 511.024 kb on + strand at 511.024 kb on + strand at 511.024 kb on + strand at 511.024 kb on + strand at 511.024 kb on + strand at 511.024 kb on + strand at 511.024 kb on + strand at 511.024 kb on + strand at 511.024 kb on + strand at 511.025 kb on - strand at 511.025 kb on - strand at 511.025 kb on - strand at 511.025 kb on - strand at 511.058 kb on + strand at 511.058 kb on + strand at 511.059 kb on - strand at 511.059 kb on - strand at 511.062 kb on + strand at 511.062 kb on + strand at 511.062 kb on + strand at 511.062 kb on + strand at 511.062 kb on + strand at 511.062 kb on + strand at 511.062 kb on + strand at 511.062 kb on + strand at 511.062 kb on + strand at 511.062 kb on + strand at 511.062 kb on + strand at 511.063 kb on - strand at 511.063 kb on - strand at 511.063 kb on - strand at 511.063 kb on - strand at 511.085 kb on - strand at 511.085 kb on - strand at 511.085 kb on - strand at 511.085 kb on - strand at 511.085 kb on - strand at 511.096 kb on + strand at 511.096 kb on + strand at 511.103 kb on + strand at 511.103 kb on + strand at 511.104 kb on - strand at 511.104 kb on - strand at 511.158 kb on + strand, within GFF473 at 511.158 kb on + strand, within GFF473 at 511.158 kb on + strand, within GFF473 at 511.158 kb on + strand, within GFF473 at 511.274 kb on + strand, within GFF473 at 511.274 kb on + strand, within GFF473 at 511.274 kb on + strand, within GFF473 at 511.274 kb on + strand, within GFF473 at 511.275 kb on - strand, within GFF473 at 511.275 kb on - strand, within GFF473 at 511.275 kb on - strand, within GFF473 at 511.424 kb on + strand at 511.424 kb on + strand at 511.424 kb on + strand at 511.424 kb on + strand at 511.424 kb on + strand at 511.424 kb on + strand at 511.424 kb on + strand at 511.424 kb on + strand at 511.424 kb on + strand at 511.424 kb on - strand at 511.425 kb on - strand at 511.425 kb on - strand at 511.425 kb on - strand at 511.425 kb on - strand at 511.425 kb on - strand at 511.425 kb on - strand at 511.429 kb on - strand at 511.776 kb on + strand, within GFF474 at 511.776 kb on + strand, within GFF474 at 511.776 kb on + strand, within GFF474 at 511.776 kb on + strand, within GFF474 at 511.776 kb on + strand, within GFF474 at 511.776 kb on + strand, within GFF474 at 511.776 kb on + strand, within GFF474 at 511.776 kb on + strand, within GFF474 at 511.785 kb on + strand, within GFF474 at 511.785 kb on + strand, within GFF474 at 511.785 kb on + strand, within GFF474 at 511.785 kb on + strand, within GFF474 at 511.785 kb on + strand, within GFF474 at 511.785 kb on + strand, within GFF474 at 511.785 kb on + strand, within GFF474 at 511.785 kb on + strand, within GFF474 at 511.785 kb on + strand, within GFF474 at 511.785 kb on + strand, within GFF474 at 511.785 kb on + strand, within GFF474 at 511.785 kb on + strand, within GFF474 at 511.786 kb on - strand, within GFF474 at 511.786 kb on - strand, within GFF474 at 511.786 kb on - strand, within GFF474 at 511.786 kb on - strand, within GFF474 at 511.786 kb on - strand, within GFF474 at 511.786 kb on - strand, within GFF474 at 511.786 kb on - strand, within GFF474 at 511.786 kb on - strand, within GFF474 at 511.786 kb on - strand, within GFF474 at 511.786 kb on - strand, within GFF474 at 511.786 kb on - strand, within GFF474 at 511.786 kb on - strand, within GFF474 at 511.786 kb on - strand, within GFF474 at 511.786 kb on - strand, within GFF474 at 511.786 kb on - strand, within GFF474 at 511.786 kb on - strand, within GFF474 at 511.786 kb on - strand, within GFF474 at 512.044 kb on - strand at 512.071 kb on + strand at 512.071 kb on + strand at 512.071 kb on + strand at 512.071 kb on + strand at 512.096 kb on + strand at 512.096 kb on + strand at 512.096 kb on + strand at 512.096 kb on + strand at 512.097 kb on - strand at 512.097 kb on - strand at 512.526 kb on - strand, within GFF475 at 512.526 kb on - strand, within GFF475 at 512.526 kb on - strand, within GFF475 at 512.567 kb on + strand, within GFF475 at 512.567 kb on + strand, within GFF475 at 512.567 kb on + strand, within GFF475 at 512.567 kb on + strand, within GFF475 at 512.567 kb on + strand, within GFF475 at 512.568 kb on - strand, within GFF475 at 512.568 kb on - strand, within GFF475 at 512.568 kb on - strand, within GFF475 at 512.568 kb on - strand, within GFF475 at 512.568 kb on - strand, within GFF475 at 512.568 kb on - strand, within GFF475 at 512.568 kb on - strand, within GFF475 at 512.568 kb on - strand, within GFF475 at 512.597 kb on + strand, within GFF475 at 512.597 kb on + strand, within GFF475 at 512.597 kb on + strand, within GFF475 at 512.597 kb on + strand, within GFF475 at 512.597 kb on + strand, within GFF475 at 512.597 kb on + strand, within GFF475 at 512.597 kb on + strand, within GFF475 at 512.597 kb on + strand, within GFF475 at 512.597 kb on + strand, within GFF475 at 512.597 kb on + strand, within GFF475 at 512.597 kb on + strand, within GFF475 at 512.598 kb on - strand, within GFF475 at 512.598 kb on - strand, within GFF475 at 512.598 kb on - strand, within GFF475 at 512.598 kb on - strand, within GFF475 at 512.598 kb on - strand, within GFF475 at 512.598 kb on - strand, within GFF475 at 512.598 kb on - strand, within GFF475 at 512.598 kb on - strand, within GFF475 at 512.598 kb on - strand, within GFF475 at 512.700 kb on + strand, within GFF475 at 512.867 kb on + strand, within GFF475 at 512.867 kb on + strand, within GFF475 at 512.868 kb on - strand, within GFF475 at 512.868 kb on - strand, within GFF475 at 512.868 kb on - strand, within GFF475 at 512.868 kb on - strand, within GFF475 at 512.868 kb on - strand, within GFF475 at 512.868 kb on - strand, within GFF475 at 512.868 kb on - strand, within GFF475 at 512.868 kb on - strand, within GFF475
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 510,647 + -0.4 510,647 + +0.4 510,647 + +1.7 510,647 + -0.2 510,647 + +1.6 510,647 + +0.3 510,647 + +0.1 510,648 - -0.3 510,648 - -0.2 510,648 - -0.6 510,648 - +0.2 510,648 - +1.4 510,648 - -1.0 510,648 - -1.0 510,648 - +0.0 510,753 + -0.8 510,754 + -0.3 510,754 + -0.5 510,754 + -0.3 510,860 + GFF472 0.36 +0.7 510,860 + GFF472 0.36 -0.6 510,860 + GFF472 0.36 -0.1 510,860 + GFF472 0.36 -0.1 510,860 + GFF472 0.36 +0.6 510,860 + GFF472 0.36 +0.2 510,861 - GFF472 0.36 +0.3 510,861 - GFF472 0.36 +0.4 510,861 - GFF472 0.36 +0.3 510,861 - GFF472 0.36 +0.5 510,861 - GFF472 0.36 -0.1 510,861 - GFF472 0.36 -0.3 510,861 - GFF472 0.36 -0.3 510,861 - GFF472 0.36 +0.7 510,862 + GFF472 0.36 +0.2 510,862 + GFF472 0.36 -1.0 510,863 - GFF472 0.37 -0.2 510,961 + GFF472 0.69 -0.6 510,961 + GFF472 0.69 +0.9 510,962 - GFF472 0.70 +0.2 510,962 - GFF472 0.70 -0.8 510,962 - GFF472 0.70 -0.3 511,024 + +0.2 511,024 + -1.7 511,024 + -0.4 511,024 + -0.5 511,024 + +0.1 511,024 + +0.3 511,024 + -0.1 511,024 + +0.1 511,024 + +0.4 511,024 + -0.0 511,025 - +1.2 511,025 - -0.5 511,025 - +0.1 511,025 - +0.2 511,058 + +0.4 511,058 + +0.0 511,059 - +0.2 511,059 - +0.4 511,062 + -0.0 511,062 + -1.0 511,062 + +0.0 511,062 + +0.5 511,062 + +0.4 511,062 + -0.1 511,062 + -0.2 511,062 + -1.1 511,062 + +0.4 511,062 + +0.6 511,062 + -0.6 511,063 - -0.3 511,063 - -1.0 511,063 - -1.0 511,063 - -0.7 511,085 - +1.0 511,085 - -0.4 511,085 - -0.7 511,085 - +0.4 511,085 - +0.3 511,096 + -0.6 511,096 + -0.0 511,103 + -0.5 511,103 + +0.2 511,104 - -0.1 511,104 - +1.0 511,158 + GFF473 0.10 +1.0 511,158 + GFF473 0.10 -1.8 511,158 + GFF473 0.10 +0.1 511,158 + GFF473 0.10 +2.3 511,274 + GFF473 0.49 +1.6 511,274 + GFF473 0.49 +1.2 511,274 + GFF473 0.49 +0.1 511,274 + GFF473 0.49 -1.8 511,275 - GFF473 0.49 +0.1 511,275 - GFF473 0.49 -0.8 511,275 - GFF473 0.49 +1.4 511,424 + +0.7 511,424 + +0.7 511,424 + +1.3 511,424 + +0.7 511,424 + -0.0 511,424 + -0.3 511,424 + -2.0 511,424 + -1.3 511,424 + -0.8 511,424 - +1.0 511,425 - +0.6 511,425 - -0.6 511,425 - +0.8 511,425 - -0.2 511,425 - +0.4 511,425 - +0.4 511,429 - -1.7 511,776 + GFF474 0.63 -0.1 511,776 + GFF474 0.63 -0.6 511,776 + GFF474 0.63 -1.6 511,776 + GFF474 0.63 +0.4 511,776 + GFF474 0.63 +0.8 511,776 + GFF474 0.63 -0.9 511,776 + GFF474 0.63 -0.6 511,776 + GFF474 0.63 -1.0 511,785 + GFF474 0.65 +0.1 511,785 + GFF474 0.65 -1.0 511,785 + GFF474 0.65 -0.3 511,785 + GFF474 0.65 -1.2 511,785 + GFF474 0.65 -0.6 511,785 + GFF474 0.65 -1.6 511,785 + GFF474 0.65 -0.0 511,785 + GFF474 0.65 -0.0 511,785 + GFF474 0.65 -0.6 511,785 + GFF474 0.65 +2.0 511,785 + GFF474 0.65 -0.9 511,785 + GFF474 0.65 +0.4 511,786 - GFF474 0.65 -1.3 511,786 - GFF474 0.65 -0.5 511,786 - GFF474 0.65 -1.3 511,786 - GFF474 0.65 -0.9 511,786 - GFF474 0.65 -0.4 511,786 - GFF474 0.65 -0.8 511,786 - GFF474 0.65 -0.5 511,786 - GFF474 0.65 -0.4 511,786 - GFF474 0.65 -0.7 511,786 - GFF474 0.65 -1.2 511,786 - GFF474 0.65 -1.8 511,786 - GFF474 0.65 -0.0 511,786 - GFF474 0.65 -0.1 511,786 - GFF474 0.65 -1.5 511,786 - GFF474 0.65 -0.4 511,786 - GFF474 0.65 -0.6 511,786 - GFF474 0.65 +0.4 512,044 - -0.1 512,071 + +0.6 512,071 + -0.2 512,071 + +0.4 512,071 + -0.5 512,096 + -1.5 512,096 + +0.0 512,096 + +2.0 512,096 + -0.6 512,097 - -0.8 512,097 - +0.4 512,526 - GFF475 0.21 -0.6 512,526 - GFF475 0.21 +0.5 512,526 - GFF475 0.21 +0.4 512,567 + GFF475 0.23 -0.1 512,567 + GFF475 0.23 -1.3 512,567 + GFF475 0.23 -0.0 512,567 + GFF475 0.23 -1.9 512,567 + GFF475 0.23 +0.5 512,568 - GFF475 0.23 +0.3 512,568 - GFF475 0.23 -0.8 512,568 - GFF475 0.23 +1.2 512,568 - GFF475 0.23 -0.7 512,568 - GFF475 0.23 -0.8 512,568 - GFF475 0.23 +1.4 512,568 - GFF475 0.23 +0.2 512,568 - GFF475 0.23 +0.9 512,597 + GFF475 0.25 -0.3 512,597 + GFF475 0.25 -1.4 512,597 + GFF475 0.25 +0.2 512,597 + GFF475 0.25 +0.1 512,597 + GFF475 0.25 -0.6 512,597 + GFF475 0.25 -0.9 512,597 + GFF475 0.25 +0.1 512,597 + GFF475 0.25 -2.5 512,597 + GFF475 0.25 +0.7 512,597 + GFF475 0.25 -0.3 512,597 + GFF475 0.25 +0.5 512,598 - GFF475 0.25 +1.1 512,598 - GFF475 0.25 -0.8 512,598 - GFF475 0.25 +1.0 512,598 - GFF475 0.25 -0.3 512,598 - GFF475 0.25 -1.0 512,598 - GFF475 0.25 +0.4 512,598 - GFF475 0.25 -0.2 512,598 - GFF475 0.25 -0.8 512,598 - GFF475 0.25 -0.6 512,700 + GFF475 0.30 -0.7 512,867 + GFF475 0.38 -0.8 512,867 + GFF475 0.38 -1.6 512,868 - GFF475 0.38 -0.9 512,868 - GFF475 0.38 +0.2 512,868 - GFF475 0.38 +0.0 512,868 - GFF475 0.38 +1.0 512,868 - GFF475 0.38 -0.6 512,868 - GFF475 0.38 -1.7 512,868 - GFF475 0.38 +1.0 512,868 - GFF475 0.38 +0.5
Or see this region's nucleotide sequence