Strain Fitness in Variovorax sp. SCN45 around GFF4726

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
87,037	+		GFF4725	0.10	-0.8
87,037	+		GFF4725	0.10	-1.0
87,037	+		GFF4725	0.10	-0.3
87,268	+		GFF4725	0.36	-1.9
87,268	+		GFF4725	0.36	+0.7
87,268	+		GFF4725	0.36	-0.3
87,269	-		GFF4725	0.36	+0.7
87,453	+		GFF4725	0.56	-0.3
87,453	+		GFF4725	0.56	-0.2
87,454	-		GFF4725	0.56	+0.2
87,454	-		GFF4725	0.56	+1.3
87,454	-		GFF4725	0.56	-0.3
87,595	+		GFF4725	0.72	-0.4
87,595	+		GFF4725	0.72	-1.7
87,596	-		GFF4725	0.72	+0.1
87,596	-		GFF4725	0.72	-0.9
87,596	-		GFF4725	0.72	-0.5
87,596	-		GFF4725	0.72	-1.0
87,835	+				-0.4
87,835	+				+1.2
87,835	+				-0.7
87,835	+				-1.7
87,835	+				-1.5
87,836	-				-1.6
87,836	-				-0.2
87,878	+				-0.8
87,879	-				+0.0
87,879	-				+0.3
87,879	-				-1.1
87,879	-				-0.9
87,900	+				-0.7
88,068	+				-0.9
88,069	-				+0.3
88,069	-				+0.0
88,069	-				-0.9
88,072	+				+0.4
88,073	-				-0.5
88,163	+				+0.6
88,164	+				+0.1
88,164	+				+0.8
88,164	+				+0.1
88,165	-				+2.2
88,165	-				-0.6
88,168	+				-0.5
88,168	+				-0.5
88,168	+				-0.8
88,168	+				-1.0
88,168	+				-0.5
88,168	+				-0.4
88,168	+				-0.8
88,169	-				-0.2
88,169	-				+0.4
88,169	-				-0.2
88,169	-				-0.0
88,169	-				-0.4
88,420	+		GFF4726	0.19	+0.5
88,674	+		GFF4726	0.29	-0.4
88,675	-		GFF4726	0.29	-0.6
88,675	-		GFF4726	0.29	-0.7
88,675	-		GFF4726	0.29	+0.8
88,726	-		GFF4726	0.32	-0.4
88,726	-		GFF4726	0.32	-0.2
88,726	-		GFF4726	0.32	-1.2
88,726	-		GFF4726	0.32	+0.1
88,840	-		GFF4726	0.36	-1.2
88,897	-		GFF4726	0.39	+0.5
88,897	-		GFF4726	0.39	+0.3
88,917	+		GFF4726	0.39	-0.1
88,918	-		GFF4726	0.39	-0.2
89,082	+		GFF4726	0.46	-1.2
89,083	-		GFF4726	0.46	+0.4
89,097	+		GFF4726	0.47	-0.8
89,098	-		GFF4726	0.47	-0.7
89,098	-		GFF4726	0.47	-0.1
89,098	-		GFF4726	0.47	+0.5
89,202	+		GFF4726	0.51	-0.7
89,202	+		GFF4726	0.51	-0.8
89,202	+		GFF4726	0.51	+0.7
89,203	-		GFF4726	0.51	+1.3
89,203	-		GFF4726	0.51	-3.1
89,203	-		GFF4726	0.51	+0.1
89,203	-		GFF4726	0.51	-0.0
89,203	-		GFF4726	0.51	-0.0
89,205	+		GFF4726	0.51	-1.0
89,205	+		GFF4726	0.51	+2.0
89,206	-		GFF4726	0.51	-0.3
89,311	-		GFF4726	0.56	-0.9
89,316	+		GFF4726	0.56	+0.6
89,316	+		GFF4726	0.56	-1.2
89,316	+		GFF4726	0.56	+0.1
89,316	+		GFF4726	0.56	+0.3
89,317	-		GFF4726	0.56	+1.1
89,317	-		GFF4726	0.56	+0.7
89,317	-		GFF4726	0.56	+0.1
89,358	+		GFF4726	0.58	+0.7
89,358	+		GFF4726	0.58	-1.2
89,358	+		GFF4726	0.58	+0.4
89,359	-		GFF4726	0.58	+0.1
89,359	-		GFF4726	0.58	-0.2
89,359	-		GFF4726	0.58	+1.1
89,359	-		GFF4726	0.58	-0.5
89,373	+		GFF4726	0.58	-0.5
89,433	+		GFF4726	0.61	-0.5
89,433	+		GFF4726	0.61	-0.5
89,434	-		GFF4726	0.61	-1.0
89,434	-		GFF4726	0.61	-0.5
89,434	-		GFF4726	0.61	-0.6
89,475	+		GFF4726	0.63	+0.4
89,476	-		GFF4726	0.63	-0.2
89,476	-		GFF4726	0.63	-0.8
89,476	-		GFF4726	0.63	-0.7
89,530	-		GFF4726	0.65	+0.4
89,562	+		GFF4726	0.66	+1.1
89,562	+		GFF4726	0.66	+0.6
89,562	+		GFF4726	0.66	-0.1
89,634	+		GFF4726	0.69	-0.4
89,635	-		GFF4726	0.69	-0.6
89,635	-		GFF4726	0.69	+0.3
89,635	-		GFF4726	0.69	-0.1
89,635	-		GFF4726	0.69	+0.1
89,635	-		GFF4726	0.69	-0.7
89,640	+		GFF4726	0.69	+0.4
89,640	+		GFF4726	0.69	-0.6
89,640	+		GFF4726	0.69	-0.5
89,641	-		GFF4726	0.69	-0.1
89,641	-		GFF4726	0.69	-1.1
89,641	-		GFF4726	0.69	-0.5
89,760	+		GFF4726	0.74	-0.5
89,760	+		GFF4726	0.74	+0.8
89,761	-		GFF4726	0.74	-0.6
89,761	-		GFF4726	0.74	+0.7
89,793	+		GFF4726	0.76	+1.1
89,793	+		GFF4726	0.76	-0.1
89,793	+		GFF4726	0.76	-0.3
89,793	+		GFF4726	0.76	-2.1
89,793	+		GFF4726	0.76	+0.4
89,793	+		GFF4726	0.76	-0.4
89,793	+		GFF4726	0.76	-1.9
89,793	+		GFF4726	0.76	-0.7
89,793	+		GFF4726	0.76	+0.2
89,794	-		GFF4726	0.76	-0.4
89,794	-		GFF4726	0.76	-0.0
89,794	-		GFF4726	0.76	-0.9
89,794	-		GFF4726	0.76	-1.8
89,794	-		GFF4726	0.76	-0.3
89,794	-		GFF4726	0.76	+0.1
89,794	-		GFF4726	0.76	-0.3
89,796	+		GFF4726	0.76	-0.9
89,796	+		GFF4726	0.76	+0.0
89,796	+		GFF4726	0.76	+1.2
89,797	-		GFF4726	0.76	-0.2
89,797	-		GFF4726	0.76	-0.1
89,797	-		GFF4726	0.76	+0.0
89,797	-		GFF4726	0.76	-0.7
89,797	-		GFF4726	0.76	-0.7
89,799	+		GFF4726	0.76	-0.7
89,799	+		GFF4726	0.76	-0.4
89,799	+		GFF4726	0.76	+0.0
89,800	-		GFF4726	0.76	-0.3
89,808	+		GFF4726	0.76	-0.9
89,808	+		GFF4726	0.76	-1.2
89,808	+		GFF4726	0.76	-1.0
89,809	-		GFF4726	0.76	-0.8
89,836	-		GFF4726	0.77	-1.0
89,836	-		GFF4726	0.77	-0.5
89,872	-		GFF4726	0.79	-0.9
89,874	+		GFF4726	0.79	-0.5
89,874	+		GFF4726	0.79	+0.3
89,874	+		GFF4726	0.79	-0.8
89,875	-		GFF4726	0.79	-0.2
89,875	-		GFF4726	0.79	+0.9
89,875	-		GFF4726	0.79	+0.7
89,982	+		GFF4726	0.84	+0.7
89,982	+		GFF4726	0.84	-0.9
89,982	+		GFF4726	0.84	+0.1
89,983	-		GFF4726	0.84	-0.6
89,983	-		GFF4726	0.84	+0.2
90,198	+				+0.4
90,199	-				-0.3
90,199	-				-0.9
90,199	-				-0.5
90,445	+				-0.9
90,445	+				-0.3
90,446	-				+1.1
90,544	+				+0.3
90,545	-				-0.5
90,601	+		GFF4727	0.13	-1.2
90,602	-		GFF4727	0.14	-0.1
90,850	+		GFF4727	0.53	+1.4
90,901	+		GFF4727	0.61	+1.1
90,901	+		GFF4727	0.61	-0.1
90,901	+		GFF4727	0.61	-0.5
90,902	-		GFF4727	0.61	-2.2
90,902	-		GFF4727	0.61	+0.3
90,902	-		GFF4727	0.61	+0.0
90,902	-		GFF4727	0.61	-0.8
90,902	-		GFF4727	0.61	-0.7
90,916	+		GFF4727	0.63	-0.3
91,249	-				-0.2