Strain Fitness in Variovorax sp. SCN45 around GFF4690

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4689 and GFF4690 are separated by 10 nucleotidesGFF4690 and GFF4691 overlap by 11 nucleotides GFF4689 - Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein CzcB, at 49,375 to 50,763 GFF4689 GFF4690 - Cobalt/zinc/cadmium efflux RND transporter, transmembrane protein CzcA, at 50,774 to 53,986 GFF4690 GFF4691 - Cobalt/zinc/cadmium resistance protein CzcD, at 53,976 to 54,887 GFF4691 Position (kb) 50 51 52 53 54Strain fitness (log2 ratio) -2 -1 0 1at 49.780 kb on - strand, within GFF4689at 49.843 kb on + strand, within GFF4689at 50.032 kb on + strand, within GFF4689at 50.032 kb on + strand, within GFF4689at 50.032 kb on + strand, within GFF4689at 50.032 kb on + strand, within GFF4689at 50.032 kb on + strand, within GFF4689at 50.032 kb on + strand, within GFF4689at 50.032 kb on + strand, within GFF4689at 50.032 kb on + strand, within GFF4689at 50.032 kb on + strand, within GFF4689at 50.033 kb on - strand, within GFF4689at 50.033 kb on - strand, within GFF4689at 50.033 kb on - strand, within GFF4689at 50.033 kb on - strand, within GFF4689at 50.033 kb on - strand, within GFF4689at 50.033 kb on - strand, within GFF4689at 50.033 kb on - strand, within GFF4689at 50.033 kb on - strand, within GFF4689at 50.033 kb on - strand, within GFF4689at 50.033 kb on - strand, within GFF4689at 50.033 kb on - strand, within GFF4689at 50.036 kb on + strand, within GFF4689at 50.036 kb on + strand, within GFF4689at 50.037 kb on - strand, within GFF4689at 50.083 kb on + strand, within GFF4689at 50.083 kb on + strand, within GFF4689at 50.083 kb on + strand, within GFF4689at 50.083 kb on + strand, within GFF4689at 50.083 kb on + strand, within GFF4689at 50.083 kb on + strand, within GFF4689at 50.084 kb on - strand, within GFF4689at 50.410 kb on + strand, within GFF4689at 50.410 kb on + strand, within GFF4689at 50.410 kb on + strand, within GFF4689at 50.410 kb on + strand, within GFF4689at 50.410 kb on + strand, within GFF4689at 50.410 kb on + strand, within GFF4689at 50.411 kb on - strand, within GFF4689at 50.411 kb on - strand, within GFF4689at 50.695 kb on + strandat 50.695 kb on + strandat 50.696 kb on - strandat 50.865 kb on - strandat 50.897 kb on - strandat 51.035 kb on + strandat 51.083 kb on + strandat 51.083 kb on + strandat 51.083 kb on + strandat 51.083 kb on + strandat 51.083 kb on + strandat 51.083 kb on + strandat 51.083 kb on + strandat 51.083 kb on + strandat 51.083 kb on + strandat 51.083 kb on + strandat 51.084 kb on - strandat 51.084 kb on - strandat 51.084 kb on - strandat 51.084 kb on - strandat 51.191 kb on + strand, within GFF4690at 51.191 kb on + strand, within GFF4690at 51.191 kb on + strand, within GFF4690at 51.191 kb on + strand, within GFF4690at 51.191 kb on + strand, within GFF4690at 51.191 kb on + strand, within GFF4690at 51.191 kb on + strand, within GFF4690at 51.192 kb on - strand, within GFF4690at 51.192 kb on - strand, within GFF4690at 51.192 kb on - strand, within GFF4690at 51.192 kb on - strand, within GFF4690at 51.246 kb on - strand, within GFF4690at 51.342 kb on - strand, within GFF4690at 51.360 kb on + strand, within GFF4690at 51.456 kb on - strand, within GFF4690at 51.456 kb on - strand, within GFF4690at 51.479 kb on + strand, within GFF4690at 51.479 kb on + strand, within GFF4690at 51.479 kb on + strand, within GFF4690at 51.479 kb on + strand, within GFF4690at 51.480 kb on - strand, within GFF4690at 51.480 kb on - strand, within GFF4690at 51.480 kb on - strand, within GFF4690at 51.480 kb on - strand, within GFF4690at 51.480 kb on - strand, within GFF4690at 51.761 kb on + strand, within GFF4690at 51.761 kb on + strand, within GFF4690at 52.161 kb on - strand, within GFF4690at 52.161 kb on - strand, within GFF4690at 52.349 kb on + strand, within GFF4690at 52.350 kb on - strand, within GFF4690at 52.658 kb on + strand, within GFF4690at 52.658 kb on + strand, within GFF4690at 52.658 kb on + strand, within GFF4690at 52.659 kb on - strand, within GFF4690at 52.659 kb on - strand, within GFF4690at 52.659 kb on - strand, within GFF4690at 52.659 kb on - strand, within GFF4690at 52.763 kb on + strand, within GFF4690at 52.763 kb on + strand, within GFF4690at 52.763 kb on + strand, within GFF4690at 52.763 kb on + strand, within GFF4690at 52.763 kb on + strand, within GFF4690at 52.763 kb on + strand, within GFF4690at 52.763 kb on + strand, within GFF4690at 52.764 kb on - strand, within GFF4690at 52.764 kb on - strand, within GFF4690at 53.366 kb on + strand, within GFF4690at 53.367 kb on - strand, within GFF4690at 53.390 kb on + strand, within GFF4690at 53.877 kb on - strandat 53.923 kb on + strandat 53.924 kb on - strandat 54.051 kb on + strandat 54.052 kb on - strandat 54.052 kb on - strandat 54.052 kb on - strandat 54.197 kb on + strand, within GFF4691at 54.197 kb on + strand, within GFF4691at 54.208 kb on - strand, within GFF4691at 54.211 kb on - strand, within GFF4691at 54.270 kb on + strand, within GFF4691at 54.270 kb on + strand, within GFF4691at 54.270 kb on + strand, within GFF4691at 54.270 kb on + strand, within GFF4691at 54.271 kb on - strand, within GFF4691at 54.271 kb on - strand, within GFF4691at 54.271 kb on - strand, within GFF4691at 54.271 kb on - strand, within GFF4691at 54.271 kb on - strand, within GFF4691at 54.271 kb on - strand, within GFF4691at 54.271 kb on - strand, within GFF4691at 54.271 kb on - strand, within GFF4691at 54.271 kb on - strand, within GFF4691at 54.271 kb on - strand, within GFF4691at 54.279 kb on + strand, within GFF4691at 54.427 kb on - strand, within GFF4691at 54.427 kb on - strand, within GFF4691at 54.427 kb on - strand, within GFF4691at 54.745 kb on + strand, within GFF4691at 54.745 kb on + strand, within GFF4691at 54.745 kb on + strand, within GFF4691at 54.745 kb on + strand, within GFF4691at 54.746 kb on - strand, within GFF4691at 54.746 kb on - strand, within GFF4691at 54.943 kb on + strandat 54.943 kb on + strandat 54.944 kb on - strandat 54.944 kb on - strandat 54.944 kb on - strandat 54.944 kb on - strandat 54.945 kb on + strandat 54.945 kb on + strandat 54.946 kb on - strandat 54.946 kb on - strandat 54.946 kb on - strandat 54.946 kb on - strandat 54.946 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
49,780 - GFF4689 0.29 -0.3
49,843 + GFF4689 0.34 +1.7
50,032 + GFF4689 0.47 -0.9
50,032 + GFF4689 0.47 +0.2
50,032 + GFF4689 0.47 -0.5
50,032 + GFF4689 0.47 -1.0
50,032 + GFF4689 0.47 +0.7
50,032 + GFF4689 0.47 -0.2
50,032 + GFF4689 0.47 -0.6
50,032 + GFF4689 0.47 -0.2
50,032 + GFF4689 0.47 -0.0
50,033 - GFF4689 0.47 -0.5
50,033 - GFF4689 0.47 -1.9
50,033 - GFF4689 0.47 +1.4
50,033 - GFF4689 0.47 -0.7
50,033 - GFF4689 0.47 +0.1
50,033 - GFF4689 0.47 -1.1
50,033 - GFF4689 0.47 -0.9
50,033 - GFF4689 0.47 +0.8
50,033 - GFF4689 0.47 +0.4
50,033 - GFF4689 0.47 -0.3
50,033 - GFF4689 0.47 -0.4
50,036 + GFF4689 0.48 -1.2
50,036 + GFF4689 0.48 -1.3
50,037 - GFF4689 0.48 +0.2
50,083 + GFF4689 0.51 +0.1
50,083 + GFF4689 0.51 +0.7
50,083 + GFF4689 0.51 -0.8
50,083 + GFF4689 0.51 -0.9
50,083 + GFF4689 0.51 -0.4
50,083 + GFF4689 0.51 +0.3
50,084 - GFF4689 0.51 -0.1
50,410 + GFF4689 0.75 +1.7
50,410 + GFF4689 0.75 +1.4
50,410 + GFF4689 0.75 -1.2
50,410 + GFF4689 0.75 +0.5
50,410 + GFF4689 0.75 -1.0
50,410 + GFF4689 0.75 +0.5
50,411 - GFF4689 0.75 +1.1
50,411 - GFF4689 0.75 -1.3
50,695 + -0.6
50,695 + -0.9
50,696 - -1.3
50,865 - -0.2
50,897 - -0.2
51,035 + +0.8
51,083 + +0.0
51,083 + +0.3
51,083 + +0.4
51,083 + +0.5
51,083 + +0.7
51,083 + +0.3
51,083 + +0.2
51,083 + +0.6
51,083 + -0.2
51,083 + +0.2
51,084 - -1.5
51,084 - +0.4
51,084 - +0.5
51,084 - +0.0
51,191 + GFF4690 0.13 +0.3
51,191 + GFF4690 0.13 +0.5
51,191 + GFF4690 0.13 -1.3
51,191 + GFF4690 0.13 -0.3
51,191 + GFF4690 0.13 -1.2
51,191 + GFF4690 0.13 -0.7
51,191 + GFF4690 0.13 -1.2
51,192 - GFF4690 0.13 -0.7
51,192 - GFF4690 0.13 +0.1
51,192 - GFF4690 0.13 +0.8
51,192 - GFF4690 0.13 -1.3
51,246 - GFF4690 0.15 -2.1
51,342 - GFF4690 0.18 -0.2
51,360 + GFF4690 0.18 -0.9
51,456 - GFF4690 0.21 -0.4
51,456 - GFF4690 0.21 +0.1
51,479 + GFF4690 0.22 +0.1
51,479 + GFF4690 0.22 -0.4
51,479 + GFF4690 0.22 +0.3
51,479 + GFF4690 0.22 -0.5
51,480 - GFF4690 0.22 -0.3
51,480 - GFF4690 0.22 -0.9
51,480 - GFF4690 0.22 -1.5
51,480 - GFF4690 0.22 -0.4
51,480 - GFF4690 0.22 +0.7
51,761 + GFF4690 0.31 +0.1
51,761 + GFF4690 0.31 -1.8
52,161 - GFF4690 0.43 +0.1
52,161 - GFF4690 0.43 -0.3
52,349 + GFF4690 0.49 +0.1
52,350 - GFF4690 0.49 -0.3
52,658 + GFF4690 0.59 -0.2
52,658 + GFF4690 0.59 -0.2
52,658 + GFF4690 0.59 +1.2
52,659 - GFF4690 0.59 +1.7
52,659 - GFF4690 0.59 +0.1
52,659 - GFF4690 0.59 -0.5
52,659 - GFF4690 0.59 -1.8
52,763 + GFF4690 0.62 -0.5
52,763 + GFF4690 0.62 -0.5
52,763 + GFF4690 0.62 -1.3
52,763 + GFF4690 0.62 +0.3
52,763 + GFF4690 0.62 +0.4
52,763 + GFF4690 0.62 -0.5
52,763 + GFF4690 0.62 -0.0
52,764 - GFF4690 0.62 +0.8
52,764 - GFF4690 0.62 -0.2
53,366 + GFF4690 0.81 +0.8
53,367 - GFF4690 0.81 +0.1
53,390 + GFF4690 0.81 +0.5
53,877 - -0.0
53,923 + +0.4
53,924 - -0.6
54,051 + -0.7
54,052 - +0.3
54,052 - +0.6
54,052 - -0.1
54,197 + GFF4691 0.24 -0.8
54,197 + GFF4691 0.24 +0.5
54,208 - GFF4691 0.25 -0.5
54,211 - GFF4691 0.26 +0.7
54,270 + GFF4691 0.32 -0.0
54,270 + GFF4691 0.32 +0.6
54,270 + GFF4691 0.32 -1.5
54,270 + GFF4691 0.32 +0.3
54,271 - GFF4691 0.32 -0.1
54,271 - GFF4691 0.32 +0.2
54,271 - GFF4691 0.32 -1.3
54,271 - GFF4691 0.32 -0.3
54,271 - GFF4691 0.32 -0.0
54,271 - GFF4691 0.32 -0.8
54,271 - GFF4691 0.32 -0.1
54,271 - GFF4691 0.32 -0.8
54,271 - GFF4691 0.32 +0.5
54,271 - GFF4691 0.32 -0.9
54,279 + GFF4691 0.33 -0.8
54,427 - GFF4691 0.49 -0.0
54,427 - GFF4691 0.49 -0.3
54,427 - GFF4691 0.49 -0.1
54,745 + GFF4691 0.84 -0.0
54,745 + GFF4691 0.84 -0.0
54,745 + GFF4691 0.84 +0.5
54,745 + GFF4691 0.84 -0.2
54,746 - GFF4691 0.84 -0.3
54,746 - GFF4691 0.84 -0.2
54,943 + +0.3
54,943 + -0.6
54,944 - -0.5
54,944 - -1.5
54,944 - +0.3
54,944 - -0.8
54,945 + -1.2
54,945 + +0.7
54,946 - +0.2
54,946 - -0.3
54,946 - -0.2
54,946 - -1.5
54,946 - +1.0

Or see this region's nucleotide sequence