Strain Fitness in Variovorax sp. SCN45 around GFF452

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF450 and GFF451 overlap by 4 nucleotidesGFF451 and GFF452 are separated by 243 nucleotidesGFF452 and GFF453 are separated by 97 nucleotidesGFF453 and GFF454 overlap by 4 nucleotidesGFF454 and GFF455 are separated by 303 nucleotides GFF450 - Outer membrane vitamin B12 receptor BtuB, at 488,011 to 489,927 GFF450 GFF451 - no description, at 489,924 to 490,085 GFF451 GFF452 - Chloride channel protein, at 490,329 to 492,044 GFF452 GFF453 - hypothetical protein, at 492,142 to 492,366 GFF453 GFF454 - Z-ring-associated protein ZapA, at 492,363 to 492,707 GFF454 GFF455 - Uncharacterized UPF0721 integral membrane protein, at 493,011 to 493,838 GFF455 Position (kb) 490 491 492 493Strain fitness (log2 ratio) -1 0 1 2 3 4at 489.374 kb on + strand, within GFF450at 489.374 kb on + strand, within GFF450at 489.375 kb on - strand, within GFF450at 489.375 kb on - strand, within GFF450at 489.375 kb on - strand, within GFF450at 489.467 kb on + strand, within GFF450at 489.467 kb on + strand, within GFF450at 489.467 kb on + strand, within GFF450at 489.467 kb on + strand, within GFF450at 489.468 kb on - strand, within GFF450at 489.468 kb on - strand, within GFF450at 489.468 kb on - strand, within GFF450at 489.581 kb on + strand, within GFF450at 489.582 kb on - strand, within GFF450at 489.617 kb on + strand, within GFF450at 489.617 kb on + strand, within GFF450at 489.617 kb on + strand, within GFF450at 489.617 kb on + strand, within GFF450at 489.617 kb on + strand, within GFF450at 489.618 kb on - strand, within GFF450at 489.618 kb on - strand, within GFF450at 489.618 kb on - strand, within GFF450at 489.618 kb on - strand, within GFF450at 489.618 kb on - strand, within GFF450at 489.630 kb on + strand, within GFF450at 489.630 kb on + strand, within GFF450at 489.630 kb on + strand, within GFF450at 489.631 kb on - strand, within GFF450at 489.631 kb on - strand, within GFF450at 489.631 kb on - strand, within GFF450at 489.631 kb on - strand, within GFF450at 490.272 kb on + strandat 490.293 kb on + strandat 490.294 kb on - strandat 490.355 kb on + strandat 490.355 kb on + strandat 490.473 kb on + strandat 490.473 kb on + strandat 490.474 kb on - strandat 490.638 kb on + strand, within GFF452at 490.638 kb on + strand, within GFF452at 490.638 kb on + strand, within GFF452at 490.639 kb on - strand, within GFF452at 490.639 kb on - strand, within GFF452at 490.639 kb on - strand, within GFF452at 490.869 kb on + strand, within GFF452at 490.869 kb on + strand, within GFF452at 490.998 kb on + strand, within GFF452at 490.998 kb on + strand, within GFF452at 491.010 kb on + strand, within GFF452at 491.010 kb on + strand, within GFF452at 491.010 kb on + strand, within GFF452at 491.010 kb on + strand, within GFF452at 491.011 kb on - strand, within GFF452at 491.232 kb on + strand, within GFF452at 491.232 kb on + strand, within GFF452at 491.233 kb on - strand, within GFF452at 491.233 kb on - strand, within GFF452at 491.448 kb on + strand, within GFF452at 491.449 kb on - strand, within GFF452at 491.538 kb on + strand, within GFF452at 491.538 kb on + strand, within GFF452at 491.539 kb on - strand, within GFF452at 491.539 kb on - strand, within GFF452at 491.539 kb on - strand, within GFF452at 491.580 kb on + strand, within GFF452at 491.581 kb on - strand, within GFF452at 491.616 kb on + strand, within GFF452at 491.616 kb on + strand, within GFF452at 491.616 kb on + strand, within GFF452at 491.616 kb on + strand, within GFF452at 491.616 kb on + strand, within GFF452at 491.616 kb on + strand, within GFF452at 491.616 kb on + strand, within GFF452at 491.617 kb on - strand, within GFF452at 491.617 kb on - strand, within GFF452at 491.617 kb on - strand, within GFF452at 491.617 kb on - strand, within GFF452at 491.617 kb on - strand, within GFF452at 491.772 kb on + strand, within GFF452at 491.772 kb on + strand, within GFF452at 491.772 kb on + strand, within GFF452at 491.772 kb on + strand, within GFF452at 491.772 kb on + strand, within GFF452at 491.773 kb on - strand, within GFF452at 491.773 kb on - strand, within GFF452at 491.773 kb on - strand, within GFF452at 491.773 kb on - strand, within GFF452at 491.773 kb on - strand, within GFF452at 491.773 kb on - strand, within GFF452at 491.773 kb on - strand, within GFF452at 491.773 kb on - strand, within GFF452at 491.773 kb on - strand, within GFF452at 491.773 kb on - strand, within GFF452at 491.778 kb on + strand, within GFF452at 491.778 kb on + strand, within GFF452at 491.778 kb on + strand, within GFF452at 491.778 kb on + strand, within GFF452at 491.778 kb on + strand, within GFF452at 491.778 kb on + strand, within GFF452at 491.778 kb on + strand, within GFF452at 491.778 kb on + strand, within GFF452at 491.778 kb on + strand, within GFF452at 491.778 kb on + strand, within GFF452at 491.779 kb on - strand, within GFF452at 491.779 kb on - strand, within GFF452at 491.779 kb on - strand, within GFF452at 492.024 kb on + strandat 492.024 kb on + strandat 492.024 kb on + strandat 492.024 kb on + strandat 492.024 kb on + strandat 492.024 kb on + strandat 492.024 kb on + strandat 492.024 kb on + strandat 492.024 kb on + strandat 492.025 kb on - strandat 492.025 kb on - strandat 492.025 kb on - strandat 492.025 kb on - strandat 492.025 kb on - strandat 492.025 kb on - strandat 492.025 kb on - strandat 492.025 kb on - strandat 492.025 kb on - strandat 492.043 kb on - strandat 492.043 kb on - strandat 492.043 kb on - strandat 492.043 kb on - strandat 492.088 kb on - strandat 492.128 kb on + strandat 492.128 kb on + strandat 492.128 kb on + strandat 492.128 kb on + strandat 492.129 kb on - strandat 492.129 kb on - strandat 492.129 kb on - strandat 492.379 kb on + strandat 492.379 kb on + strandat 492.379 kb on + strandat 492.380 kb on - strandat 492.380 kb on - strandat 492.399 kb on + strand, within GFF454at 492.399 kb on + strand, within GFF454at 492.399 kb on + strand, within GFF454at 492.399 kb on + strand, within GFF454at 492.400 kb on - strand, within GFF454at 492.400 kb on - strand, within GFF454at 492.400 kb on - strand, within GFF454at 492.400 kb on - strand, within GFF454at 492.592 kb on + strand, within GFF454at 492.592 kb on + strand, within GFF454at 492.592 kb on + strand, within GFF454at 492.592 kb on + strand, within GFF454at 492.592 kb on + strand, within GFF454at 492.593 kb on - strand, within GFF454at 492.626 kb on + strand, within GFF454at 492.626 kb on + strand, within GFF454at 492.626 kb on + strand, within GFF454at 492.627 kb on - strand, within GFF454at 492.738 kb on + strandat 492.774 kb on + strandat 492.774 kb on + strandat 492.775 kb on - strandat 492.775 kb on - strandat 492.775 kb on - strandat 492.812 kb on + strandat 492.812 kb on + strandat 492.812 kb on + strandat 492.812 kb on + strandat 492.813 kb on - strandat 492.813 kb on - strandat 492.813 kb on - strandat 492.813 kb on - strandat 492.813 kb on - strandat 492.813 kb on - strandat 492.813 kb on - strandat 492.820 kb on + strandat 492.821 kb on - strandat 492.911 kb on + strandat 493.002 kb on + strandat 493.003 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
489,374 + GFF450 0.71 +0.1
489,374 + GFF450 0.71 +0.1
489,375 - GFF450 0.71 -0.4
489,375 - GFF450 0.71 -0.9
489,375 - GFF450 0.71 -0.7
489,467 + GFF450 0.76 -0.2
489,467 + GFF450 0.76 -0.5
489,467 + GFF450 0.76 +0.0
489,467 + GFF450 0.76 +0.0
489,468 - GFF450 0.76 -0.3
489,468 - GFF450 0.76 +0.0
489,468 - GFF450 0.76 -1.0
489,581 + GFF450 0.82 -0.3
489,582 - GFF450 0.82 +1.3
489,617 + GFF450 0.84 +4.3
489,617 + GFF450 0.84 +0.6
489,617 + GFF450 0.84 +0.4
489,617 + GFF450 0.84 +0.5
489,617 + GFF450 0.84 -0.2
489,618 - GFF450 0.84 +0.4
489,618 - GFF450 0.84 -1.0
489,618 - GFF450 0.84 +2.2
489,618 - GFF450 0.84 +0.8
489,618 - GFF450 0.84 -1.5
489,630 + GFF450 0.84 -0.6
489,630 + GFF450 0.84 -0.3
489,630 + GFF450 0.84 +1.0
489,631 - GFF450 0.85 -0.1
489,631 - GFF450 0.85 -0.5
489,631 - GFF450 0.85 -1.0
489,631 - GFF450 0.85 +0.4
490,272 + -0.1
490,293 + +0.4
490,294 - +0.2
490,355 + -0.3
490,355 + +0.5
490,473 + -0.4
490,473 + -0.6
490,474 - +0.2
490,638 + GFF452 0.18 +0.9
490,638 + GFF452 0.18 -0.3
490,638 + GFF452 0.18 -0.6
490,639 - GFF452 0.18 +0.7
490,639 - GFF452 0.18 +0.7
490,639 - GFF452 0.18 +0.5
490,869 + GFF452 0.31 -0.4
490,869 + GFF452 0.31 +2.0
490,998 + GFF452 0.39 +4.6
490,998 + GFF452 0.39 +0.2
491,010 + GFF452 0.40 +0.3
491,010 + GFF452 0.40 +0.5
491,010 + GFF452 0.40 +0.2
491,010 + GFF452 0.40 -0.3
491,011 - GFF452 0.40 -0.3
491,232 + GFF452 0.53 -0.2
491,232 + GFF452 0.53 -0.2
491,233 - GFF452 0.53 +0.2
491,233 - GFF452 0.53 +0.5
491,448 + GFF452 0.65 -0.5
491,449 - GFF452 0.65 +0.3
491,538 + GFF452 0.70 +0.3
491,538 + GFF452 0.70 -0.6
491,539 - GFF452 0.71 +0.6
491,539 - GFF452 0.71 +1.3
491,539 - GFF452 0.71 -1.5
491,580 + GFF452 0.73 -1.1
491,581 - GFF452 0.73 +0.8
491,616 + GFF452 0.75 -0.2
491,616 + GFF452 0.75 +0.1
491,616 + GFF452 0.75 -0.4
491,616 + GFF452 0.75 +0.7
491,616 + GFF452 0.75 -1.6
491,616 + GFF452 0.75 +0.3
491,616 + GFF452 0.75 +0.4
491,617 - GFF452 0.75 +0.7
491,617 - GFF452 0.75 -0.3
491,617 - GFF452 0.75 +0.2
491,617 - GFF452 0.75 +0.1
491,617 - GFF452 0.75 -0.1
491,772 + GFF452 0.84 -1.0
491,772 + GFF452 0.84 -0.0
491,772 + GFF452 0.84 +1.0
491,772 + GFF452 0.84 +2.4
491,772 + GFF452 0.84 -0.2
491,773 - GFF452 0.84 -0.2
491,773 - GFF452 0.84 +1.5
491,773 - GFF452 0.84 -0.3
491,773 - GFF452 0.84 -0.1
491,773 - GFF452 0.84 -1.6
491,773 - GFF452 0.84 +1.4
491,773 - GFF452 0.84 -1.3
491,773 - GFF452 0.84 +0.8
491,773 - GFF452 0.84 -0.7
491,773 - GFF452 0.84 +0.1
491,778 + GFF452 0.84 -0.7
491,778 + GFF452 0.84 -0.1
491,778 + GFF452 0.84 +0.3
491,778 + GFF452 0.84 +1.0
491,778 + GFF452 0.84 -0.8
491,778 + GFF452 0.84 -0.3
491,778 + GFF452 0.84 +0.6
491,778 + GFF452 0.84 -1.5
491,778 + GFF452 0.84 +1.5
491,778 + GFF452 0.84 +0.4
491,779 - GFF452 0.84 -0.5
491,779 - GFF452 0.84 -0.2
491,779 - GFF452 0.84 +0.5
492,024 + -0.7
492,024 + -0.6
492,024 + +0.2
492,024 + +1.6
492,024 + +0.0
492,024 + +0.2
492,024 + +1.2
492,024 + +0.3
492,024 + -0.1
492,025 - -0.3
492,025 - -0.6
492,025 - -0.6
492,025 - +1.4
492,025 - -0.8
492,025 - +0.2
492,025 - +0.4
492,025 - +1.5
492,025 - -0.3
492,043 - +1.3
492,043 - +1.4
492,043 - +1.3
492,043 - +0.9
492,088 - +0.3
492,128 + -0.2
492,128 + +0.1
492,128 + -0.1
492,128 + +0.1
492,129 - -0.7
492,129 - -0.8
492,129 - -0.2
492,379 + -0.5
492,379 + +0.7
492,379 + -0.5
492,380 - +0.4
492,380 - -0.8
492,399 + GFF454 0.10 -0.8
492,399 + GFF454 0.10 -0.7
492,399 + GFF454 0.10 -0.4
492,399 + GFF454 0.10 +1.5
492,400 - GFF454 0.11 -1.0
492,400 - GFF454 0.11 -0.4
492,400 - GFF454 0.11 -1.3
492,400 - GFF454 0.11 -0.6
492,592 + GFF454 0.66 -0.2
492,592 + GFF454 0.66 -0.3
492,592 + GFF454 0.66 +0.4
492,592 + GFF454 0.66 +0.8
492,592 + GFF454 0.66 -0.5
492,593 - GFF454 0.67 -0.3
492,626 + GFF454 0.76 -0.1
492,626 + GFF454 0.76 -0.6
492,626 + GFF454 0.76 -1.2
492,627 - GFF454 0.77 -0.7
492,738 + -0.2
492,774 + -1.6
492,774 + -0.4
492,775 - -0.0
492,775 - -0.6
492,775 - +0.7
492,812 + -0.5
492,812 + -0.2
492,812 + -0.1
492,812 + +0.3
492,813 - -0.8
492,813 - +2.0
492,813 - -0.1
492,813 - +1.1
492,813 - +0.4
492,813 - +0.4
492,813 - +1.4
492,820 + +0.5
492,821 - +0.7
492,911 + +0.6
493,002 + -0.6
493,003 - -0.5

Or see this region's nucleotide sequence