Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF435 and GFF436 are separated by 46 nucleotides GFF436 and GFF437 are separated by 193 nucleotides GFF437 and GFF438 overlap by 40 nucleotides GFF438 and GFF439 overlap by 4 nucleotides
GFF435 - hypothetical protein, at 473,265 to 473,816
GFF435
GFF436 - LrgA-associated membrane protein LrgB, at 473,863 to 474,594
GFF436
GFF437 - Antiholin-like protein LrgA, at 474,788 to 475,210
GFF437
GFF438 - L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81), at 475,171 to 476,187
GFF438
GFF439 - Adenosylcobinamide-phosphate synthase (EC 6.3.1.10), at 476,184 to 477,161
GFF439
Position (kb) 474
475
476 Strain fitness (log2 ratio) -2
-1
0
1 at 473.788 kb on + strand at 473.789 kb on - strand at 473.789 kb on - strand at 473.789 kb on - strand at 473.789 kb on - strand at 473.789 kb on - strand at 474.317 kb on + strand, within GFF436 at 474.386 kb on + strand, within GFF436 at 474.386 kb on + strand, within GFF436 at 474.386 kb on + strand, within GFF436 at 474.387 kb on - strand, within GFF436 at 474.387 kb on - strand, within GFF436 at 474.506 kb on + strand, within GFF436 at 474.507 kb on - strand, within GFF436 at 474.507 kb on - strand, within GFF436 at 475.134 kb on + strand, within GFF437 at 475.134 kb on + strand, within GFF437 at 475.134 kb on + strand, within GFF437 at 475.135 kb on - strand, within GFF437 at 475.135 kb on - strand, within GFF437 at 475.135 kb on - strand, within GFF437 at 475.337 kb on + strand, within GFF438 at 475.337 kb on + strand, within GFF438 at 475.338 kb on - strand, within GFF438 at 475.595 kb on + strand, within GFF438 at 475.595 kb on + strand, within GFF438 at 475.709 kb on + strand, within GFF438 at 475.709 kb on + strand, within GFF438 at 475.710 kb on - strand, within GFF438 at 475.710 kb on - strand, within GFF438 at 475.710 kb on - strand, within GFF438 at 475.889 kb on + strand, within GFF438 at 475.890 kb on - strand, within GFF438 at 475.890 kb on - strand, within GFF438 at 475.890 kb on - strand, within GFF438 at 475.890 kb on - strand, within GFF438 at 475.890 kb on - strand, within GFF438 at 476.039 kb on + strand, within GFF438 at 476.039 kb on + strand, within GFF438 at 476.039 kb on + strand, within GFF438 at 476.054 kb on + strand, within GFF438 at 476.055 kb on - strand, within GFF438
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 473,788 + -0.5 473,789 - +0.4 473,789 - +0.1 473,789 - +1.4 473,789 - +1.0 473,789 - -0.8 474,317 + GFF436 0.62 +0.0 474,386 + GFF436 0.71 -0.1 474,386 + GFF436 0.71 -0.7 474,386 + GFF436 0.71 -0.2 474,387 - GFF436 0.72 -0.2 474,387 - GFF436 0.72 +0.4 474,506 + GFF436 0.88 +0.8 474,507 - GFF436 0.88 -0.5 474,507 - GFF436 0.88 -0.3 475,134 + GFF437 0.82 -1.6 475,134 + GFF437 0.82 +0.4 475,134 + GFF437 0.82 -0.5 475,135 - GFF437 0.82 -1.1 475,135 - GFF437 0.82 -0.9 475,135 - GFF437 0.82 -2.0 475,337 + GFF438 0.16 -0.7 475,337 + GFF438 0.16 +0.5 475,338 - GFF438 0.16 -0.1 475,595 + GFF438 0.42 -1.1 475,595 + GFF438 0.42 -0.3 475,709 + GFF438 0.53 +0.0 475,709 + GFF438 0.53 -0.5 475,710 - GFF438 0.53 -0.2 475,710 - GFF438 0.53 -0.2 475,710 - GFF438 0.53 -0.3 475,889 + GFF438 0.71 +0.2 475,890 - GFF438 0.71 -0.9 475,890 - GFF438 0.71 +0.4 475,890 - GFF438 0.71 +0.4 475,890 - GFF438 0.71 +0.4 475,890 - GFF438 0.71 -0.8 476,039 + GFF438 0.85 +1.0 476,039 + GFF438 0.85 -0.4 476,039 + GFF438 0.85 -2.2 476,054 + GFF438 0.87 +0.4 476,055 - GFF438 0.87 -1.0
Or see this region's nucleotide sequence