Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4351 and GFF4352 are separated by 22 nucleotides GFF4352 and GFF4353 are separated by 34 nucleotides
GFF4351 - Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1), at 273,497 to 274,678
GFF4351
GFF4352 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 274,701 to 276,257
GFF4352
GFF4353 - Alpha-methylacyl-CoA racemase (EC 5.1.99.4), at 276,292 to 277,440
GFF4353
Position (kb) 274
275
276
277 Strain fitness (log2 ratio) -2
-1
0
1
2 at 273.805 kb on + strand, within GFF4351 at 274.118 kb on + strand, within GFF4351 at 274.119 kb on - strand, within GFF4351 at 274.119 kb on - strand, within GFF4351 at 274.163 kb on + strand, within GFF4351 at 274.163 kb on + strand, within GFF4351 at 274.163 kb on + strand, within GFF4351 at 274.164 kb on - strand, within GFF4351 at 274.164 kb on - strand, within GFF4351 at 274.166 kb on + strand, within GFF4351 at 274.229 kb on + strand, within GFF4351 at 274.320 kb on - strand, within GFF4351 at 274.397 kb on + strand, within GFF4351 at 274.415 kb on + strand, within GFF4351 at 274.416 kb on - strand, within GFF4351 at 274.416 kb on - strand, within GFF4351 at 274.416 kb on - strand, within GFF4351 at 274.677 kb on - strand at 274.819 kb on - strand at 275.205 kb on + strand, within GFF4352 at 275.206 kb on - strand, within GFF4352 at 275.503 kb on - strand, within GFF4352 at 276.200 kb on - strand at 276.619 kb on + strand, within GFF4353 at 276.685 kb on + strand, within GFF4353 at 276.686 kb on - strand, within GFF4353 at 276.784 kb on + strand, within GFF4353 at 276.784 kb on + strand, within GFF4353 at 276.785 kb on - strand, within GFF4353 at 276.785 kb on - strand, within GFF4353 at 276.889 kb on + strand, within GFF4353 at 276.889 kb on + strand, within GFF4353 at 276.890 kb on - strand, within GFF4353 at 276.890 kb on - strand, within GFF4353 at 276.890 kb on - strand, within GFF4353 at 276.890 kb on - strand, within GFF4353 at 276.895 kb on + strand, within GFF4353 at 276.895 kb on + strand, within GFF4353 at 276.895 kb on + strand, within GFF4353 at 276.895 kb on + strand, within GFF4353 at 276.895 kb on + strand, within GFF4353 at 276.896 kb on - strand, within GFF4353 at 276.896 kb on - strand, within GFF4353 at 276.896 kb on - strand, within GFF4353 at 276.896 kb on - strand, within GFF4353 at 277.000 kb on + strand, within GFF4353 at 277.000 kb on + strand, within GFF4353 at 277.001 kb on - strand, within GFF4353 at 277.001 kb on - strand, within GFF4353 at 277.001 kb on - strand, within GFF4353 at 277.034 kb on - strand, within GFF4353 at 277.034 kb on - strand, within GFF4353
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 273,805 + GFF4351 0.26 +0.8 274,118 + GFF4351 0.53 -0.8 274,119 - GFF4351 0.53 -0.4 274,119 - GFF4351 0.53 +0.7 274,163 + GFF4351 0.56 +0.5 274,163 + GFF4351 0.56 +0.1 274,163 + GFF4351 0.56 -0.2 274,164 - GFF4351 0.56 -0.6 274,164 - GFF4351 0.56 +2.7 274,166 + GFF4351 0.57 -1.3 274,229 + GFF4351 0.62 +0.6 274,320 - GFF4351 0.70 -0.2 274,397 + GFF4351 0.76 -1.9 274,415 + GFF4351 0.78 -0.0 274,416 - GFF4351 0.78 -0.8 274,416 - GFF4351 0.78 +0.2 274,416 - GFF4351 0.78 +0.2 274,677 - -0.8 274,819 - +0.3 275,205 + GFF4352 0.32 +0.3 275,206 - GFF4352 0.32 -2.0 275,503 - GFF4352 0.52 -0.3 276,200 - +0.8 276,619 + GFF4353 0.28 +2.0 276,685 + GFF4353 0.34 -0.6 276,686 - GFF4353 0.34 +0.3 276,784 + GFF4353 0.43 +0.1 276,784 + GFF4353 0.43 -0.7 276,785 - GFF4353 0.43 +1.5 276,785 - GFF4353 0.43 -0.3 276,889 + GFF4353 0.52 +1.1 276,889 + GFF4353 0.52 +1.2 276,890 - GFF4353 0.52 +0.3 276,890 - GFF4353 0.52 -0.1 276,890 - GFF4353 0.52 -0.4 276,890 - GFF4353 0.52 -0.2 276,895 + GFF4353 0.52 -0.1 276,895 + GFF4353 0.52 -0.3 276,895 + GFF4353 0.52 -0.3 276,895 + GFF4353 0.52 -0.3 276,895 + GFF4353 0.52 -1.3 276,896 - GFF4353 0.53 +0.2 276,896 - GFF4353 0.53 -0.1 276,896 - GFF4353 0.53 -0.2 276,896 - GFF4353 0.53 -0.4 277,000 + GFF4353 0.62 +0.2 277,000 + GFF4353 0.62 +0.3 277,001 - GFF4353 0.62 +0.1 277,001 - GFF4353 0.62 -0.1 277,001 - GFF4353 0.62 -0.1 277,034 - GFF4353 0.65 -1.0 277,034 - GFF4353 0.65 -0.5
Or see this region's nucleotide sequence