Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4302 and GFF4303 are separated by 145 nucleotides GFF4303 and GFF4304 are separated by 149 nucleotides GFF4304 and GFF4305 are separated by 232 nucleotides
GFF4302 - hypothetical protein AF1210, at 221,788 to 222,720
GFF4302
GFF4303 - Transcriptional regulator, MarR family, at 222,866 to 223,330
GFF4303
GFF4304 - Cyclohexanecarboxylate--CoA ligase, at 223,480 to 225,141
GFF4304
GFF4305 - ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 225,374 to 226,198
GFF4305
Position (kb) 223
224
225
226 Strain fitness (log2 ratio) -1
0
1 at 222.810 kb on - strand at 222.817 kb on - strand at 222.817 kb on - strand at 222.817 kb on - strand at 223.307 kb on + strand at 223.537 kb on + strand at 224.264 kb on - strand, within GFF4304 at 224.345 kb on - strand, within GFF4304 at 224.698 kb on + strand, within GFF4304 at 224.723 kb on - strand, within GFF4304 at 224.761 kb on + strand, within GFF4304 at 224.779 kb on + strand, within GFF4304 at 224.990 kb on - strand at 224.990 kb on - strand at 224.990 kb on - strand at 225.019 kb on + strand at 225.250 kb on - strand at 225.768 kb on - strand, within GFF4305
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 222,810 - -0.6 222,817 - -1.0 222,817 - -0.5 222,817 - -1.4 223,307 + -0.3 223,537 + +0.1 224,264 - GFF4304 0.47 +0.1 224,345 - GFF4304 0.52 +0.3 224,698 + GFF4304 0.73 -0.5 224,723 - GFF4304 0.75 +0.8 224,761 + GFF4304 0.77 +0.1 224,779 + GFF4304 0.78 +0.2 224,990 - -0.8 224,990 - +0.1 224,990 - -1.3 225,019 + -0.3 225,250 - +0.1 225,768 - GFF4305 0.48 -0.5
Or see this region's nucleotide sequence