Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4271 and GFF4272 are separated by 96 nucleotides GFF4272 and GFF4273 are separated by 8 nucleotides
GFF4271 - Transcriptional regulator, LysR family, at 191,279 to 192,205
GFF4271
GFF4272 - BUG/TctC family periplasmic protein, at 192,302 to 193,282
GFF4272
GFF4273 - BUG/TctC family periplasmic protein, at 193,291 to 194,259
GFF4273
Position (kb) 192
193
194 Strain fitness (log2 ratio) -1
0
1 at 191.789 kb on + strand, within GFF4271 at 192.123 kb on + strand at 192.123 kb on + strand at 192.123 kb on + strand at 192.123 kb on + strand at 192.123 kb on + strand at 192.124 kb on - strand at 192.124 kb on - strand at 192.124 kb on - strand at 192.124 kb on - strand at 192.182 kb on - strand at 192.182 kb on - strand at 192.232 kb on - strand at 192.232 kb on - strand at 192.410 kb on + strand, within GFF4272 at 192.533 kb on + strand, within GFF4272 at 192.533 kb on + strand, within GFF4272 at 192.533 kb on + strand, within GFF4272 at 192.533 kb on + strand, within GFF4272 at 192.534 kb on - strand, within GFF4272 at 192.534 kb on - strand, within GFF4272 at 192.534 kb on - strand, within GFF4272 at 192.534 kb on - strand, within GFF4272 at 192.612 kb on - strand, within GFF4272 at 192.612 kb on - strand, within GFF4272 at 192.765 kb on - strand, within GFF4272 at 192.765 kb on - strand, within GFF4272 at 192.765 kb on - strand, within GFF4272 at 192.765 kb on - strand, within GFF4272 at 192.765 kb on - strand, within GFF4272 at 192.765 kb on - strand, within GFF4272 at 193.386 kb on - strand at 193.386 kb on - strand at 193.782 kb on - strand, within GFF4273 at 193.782 kb on - strand, within GFF4273 at 193.782 kb on - strand, within GFF4273 at 193.805 kb on - strand, within GFF4273 at 193.997 kb on + strand, within GFF4273 at 193.998 kb on - strand, within GFF4273 at 194.276 kb on + strand at 194.276 kb on + strand at 194.276 kb on + strand at 194.277 kb on - strand at 194.277 kb on - strand at 194.277 kb on - strand at 194.277 kb on - strand at 194.278 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 191,789 + GFF4271 0.55 +0.7 192,123 + +0.1 192,123 + -0.3 192,123 + -0.7 192,123 + -0.3 192,123 + +0.9 192,124 - -0.3 192,124 - -1.1 192,124 - -0.3 192,124 - +1.7 192,182 - -0.6 192,182 - -0.5 192,232 - -1.6 192,232 - -1.2 192,410 + GFF4272 0.11 +0.4 192,533 + GFF4272 0.24 +0.1 192,533 + GFF4272 0.24 +0.4 192,533 + GFF4272 0.24 -0.7 192,533 + GFF4272 0.24 -1.0 192,534 - GFF4272 0.24 -0.3 192,534 - GFF4272 0.24 -0.4 192,534 - GFF4272 0.24 -0.7 192,534 - GFF4272 0.24 -0.7 192,612 - GFF4272 0.32 -0.5 192,612 - GFF4272 0.32 -1.7 192,765 - GFF4272 0.47 +0.6 192,765 - GFF4272 0.47 -0.6 192,765 - GFF4272 0.47 -0.7 192,765 - GFF4272 0.47 -0.6 192,765 - GFF4272 0.47 -0.2 192,765 - GFF4272 0.47 -0.1 193,386 - +0.8 193,386 - -0.1 193,782 - GFF4273 0.51 -1.3 193,782 - GFF4273 0.51 -0.8 193,782 - GFF4273 0.51 -0.6 193,805 - GFF4273 0.53 -1.3 193,997 + GFF4273 0.73 +0.4 193,998 - GFF4273 0.73 +0.1 194,276 + -0.6 194,276 + -0.8 194,276 + +0.2 194,277 - -0.5 194,277 - +0.0 194,277 - -0.1 194,277 - +1.3 194,278 + -0.6
Or see this region's nucleotide sequence