Strain Fitness in Variovorax sp. SCN45 around GFF4240

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4239 and GFF4240 are separated by 188 nucleotidesGFF4240 and GFF4241 overlap by 1 nucleotides GFF4239 - Mll5186 protein, at 149,991 to 150,965 GFF4239 GFF4240 - Integral membrane protein, at 151,154 to 152,875 GFF4240 GFF4241 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 152,875 to 155,901 GFF4241 Position (kb) 151 152 153Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 150.163 kb on + strand, within GFF4239at 150.163 kb on + strand, within GFF4239at 150.163 kb on + strand, within GFF4239at 150.163 kb on + strand, within GFF4239at 150.163 kb on + strand, within GFF4239at 150.164 kb on - strand, within GFF4239at 150.164 kb on - strand, within GFF4239at 150.164 kb on - strand, within GFF4239at 150.164 kb on - strand, within GFF4239at 150.164 kb on - strand, within GFF4239at 150.430 kb on + strand, within GFF4239at 150.430 kb on + strand, within GFF4239at 150.430 kb on + strand, within GFF4239at 150.430 kb on + strand, within GFF4239at 150.431 kb on - strand, within GFF4239at 150.431 kb on - strand, within GFF4239at 150.431 kb on - strand, within GFF4239at 150.650 kb on - strand, within GFF4239at 150.650 kb on - strand, within GFF4239at 150.944 kb on + strandat 150.944 kb on + strandat 150.945 kb on - strandat 150.955 kb on + strandat 150.955 kb on + strandat 150.955 kb on + strandat 150.956 kb on - strandat 150.980 kb on + strandat 150.980 kb on + strandat 150.980 kb on + strandat 150.981 kb on - strandat 150.981 kb on - strandat 150.981 kb on - strandat 151.372 kb on - strand, within GFF4240at 151.486 kb on - strand, within GFF4240at 151.530 kb on + strand, within GFF4240at 151.531 kb on - strand, within GFF4240at 151.675 kb on - strand, within GFF4240at 151.932 kb on + strand, within GFF4240at 151.932 kb on + strand, within GFF4240at 151.932 kb on + strand, within GFF4240at 151.932 kb on + strand, within GFF4240at 151.933 kb on - strand, within GFF4240at 151.933 kb on - strand, within GFF4240at 152.442 kb on + strand, within GFF4240at 152.443 kb on - strand, within GFF4240at 152.478 kb on + strand, within GFF4240at 152.479 kb on - strand, within GFF4240at 152.523 kb on + strand, within GFF4240at 152.524 kb on - strand, within GFF4240at 152.524 kb on - strand, within GFF4240at 152.524 kb on - strand, within GFF4240at 152.524 kb on - strand, within GFF4240at 152.602 kb on + strand, within GFF4240at 152.634 kb on + strand, within GFF4240at 152.634 kb on + strand, within GFF4240at 152.634 kb on + strand, within GFF4240at 152.635 kb on - strand, within GFF4240at 152.635 kb on - strand, within GFF4240at 152.635 kb on - strand, within GFF4240at 152.742 kb on + strandat 152.743 kb on - strandat 152.743 kb on - strandat 152.808 kb on + strandat 152.808 kb on + strandat 152.909 kb on + strandat 152.909 kb on + strandat 152.909 kb on + strandat 152.909 kb on + strandat 152.910 kb on - strandat 152.910 kb on - strandat 152.910 kb on - strandat 152.910 kb on - strandat 152.910 kb on - strandat 152.910 kb on - strandat 152.910 kb on - strandat 152.910 kb on - strandat 152.943 kb on - strandat 153.146 kb on + strandat 153.146 kb on + strandat 153.146 kb on + strandat 153.146 kb on + strandat 153.147 kb on - strandat 153.147 kb on - strandat 153.716 kb on + strand, within GFF4241at 153.717 kb on - strand, within GFF4241at 153.717 kb on - strand, within GFF4241at 153.719 kb on + strand, within GFF4241at 153.719 kb on + strand, within GFF4241at 153.719 kb on + strand, within GFF4241at 153.719 kb on + strand, within GFF4241at 153.719 kb on + strand, within GFF4241at 153.719 kb on + strand, within GFF4241at 153.719 kb on + strand, within GFF4241at 153.719 kb on + strand, within GFF4241at 153.719 kb on + strand, within GFF4241at 153.719 kb on + strand, within GFF4241at 153.720 kb on - strand, within GFF4241at 153.720 kb on - strand, within GFF4241at 153.720 kb on - strand, within GFF4241at 153.720 kb on - strand, within GFF4241at 153.720 kb on - strand, within GFF4241at 153.720 kb on - strand, within GFF4241at 153.831 kb on - strand, within GFF4241

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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150,163 + GFF4239 0.18 -1.0
150,163 + GFF4239 0.18 +0.2
150,163 + GFF4239 0.18 -1.0
150,163 + GFF4239 0.18 +0.5
150,163 + GFF4239 0.18 +1.6
150,164 - GFF4239 0.18 -0.1
150,164 - GFF4239 0.18 -1.6
150,164 - GFF4239 0.18 -0.2
150,164 - GFF4239 0.18 -1.6
150,164 - GFF4239 0.18 -2.1
150,430 + GFF4239 0.45 -1.0
150,430 + GFF4239 0.45 -1.0
150,430 + GFF4239 0.45 +4.1
150,430 + GFF4239 0.45 -0.1
150,431 - GFF4239 0.45 -0.4
150,431 - GFF4239 0.45 +0.2
150,431 - GFF4239 0.45 +0.2
150,650 - GFF4239 0.68 -0.3
150,650 - GFF4239 0.68 -0.2
150,944 + -0.6
150,944 + -0.1
150,945 - -0.6
150,955 + +1.4
150,955 + +0.2
150,955 + +0.7
150,956 - -0.7
150,980 + +0.2
150,980 + +0.0
150,980 + +0.3
150,981 - -1.1
150,981 - -1.1
150,981 - +1.1
151,372 - GFF4240 0.13 +0.5
151,486 - GFF4240 0.19 +0.1
151,530 + GFF4240 0.22 +0.4
151,531 - GFF4240 0.22 -0.1
151,675 - GFF4240 0.30 -1.3
151,932 + GFF4240 0.45 +0.1
151,932 + GFF4240 0.45 -0.3
151,932 + GFF4240 0.45 +0.1
151,932 + GFF4240 0.45 +0.2
151,933 - GFF4240 0.45 -0.4
151,933 - GFF4240 0.45 +0.3
152,442 + GFF4240 0.75 -0.8
152,443 - GFF4240 0.75 -1.0
152,478 + GFF4240 0.77 -0.9
152,479 - GFF4240 0.77 +0.9
152,523 + GFF4240 0.80 +0.5
152,524 - GFF4240 0.80 -0.9
152,524 - GFF4240 0.80 +0.1
152,524 - GFF4240 0.80 -0.4
152,524 - GFF4240 0.80 -0.8
152,602 + GFF4240 0.84 +0.9
152,634 + GFF4240 0.86 +0.6
152,634 + GFF4240 0.86 +0.2
152,634 + GFF4240 0.86 -0.8
152,635 - GFF4240 0.86 +0.5
152,635 - GFF4240 0.86 -1.2
152,635 - GFF4240 0.86 -0.0
152,742 + +0.7
152,743 - +0.2
152,743 - +0.8
152,808 + -0.7
152,808 + -1.3
152,909 + -0.1
152,909 + -0.9
152,909 + +0.8
152,909 + -0.3
152,910 - -0.5
152,910 - +0.0
152,910 - -0.9
152,910 - -0.2
152,910 - -0.5
152,910 - +1.7
152,910 - -1.3
152,910 - +1.7
152,943 - +0.4
153,146 + -1.5
153,146 + +0.3
153,146 + +0.1
153,146 + +1.2
153,147 - +0.0
153,147 - -1.0
153,716 + GFF4241 0.28 -0.0
153,717 - GFF4241 0.28 -0.6
153,717 - GFF4241 0.28 -0.7
153,719 + GFF4241 0.28 -0.0
153,719 + GFF4241 0.28 +0.1
153,719 + GFF4241 0.28 -0.3
153,719 + GFF4241 0.28 -0.4
153,719 + GFF4241 0.28 +0.8
153,719 + GFF4241 0.28 -0.5
153,719 + GFF4241 0.28 -0.3
153,719 + GFF4241 0.28 +0.5
153,719 + GFF4241 0.28 -0.1
153,719 + GFF4241 0.28 -0.3
153,720 - GFF4241 0.28 -0.1
153,720 - GFF4241 0.28 +0.1
153,720 - GFF4241 0.28 -0.3
153,720 - GFF4241 0.28 +1.2
153,720 - GFF4241 0.28 -0.3
153,720 - GFF4241 0.28 -0.5
153,831 - GFF4241 0.32 +0.1

Or see this region's nucleotide sequence