Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4100 and GFF4101 are separated by 37 nucleotides
GFF4100 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 234 to 1,835
GFF4100
GFF4101 - N-methylhydantoinase B (EC 3.5.2.14), at 1,873 to 3,609
GFF4101
Position (kb) 0
1
2 Strain fitness (log2 ratio) -1
0
1
2 at 0.080 kb on + strand at 0.081 kb on - strand at 0.152 kb on - strand at 0.152 kb on - strand at 0.152 kb on - strand at 0.472 kb on + strand, within GFF4100 at 0.473 kb on - strand, within GFF4100 at 0.523 kb on + strand, within GFF4100 at 0.602 kb on - strand, within GFF4100 at 0.602 kb on - strand, within GFF4100 at 0.889 kb on + strand, within GFF4100 at 0.890 kb on - strand, within GFF4100 at 0.890 kb on - strand, within GFF4100 at 1.009 kb on + strand, within GFF4100 at 1.195 kb on + strand, within GFF4100 at 1.196 kb on - strand, within GFF4100 at 1.213 kb on + strand, within GFF4100 at 1.312 kb on + strand, within GFF4100 at 1.313 kb on - strand, within GFF4100 at 1.402 kb on + strand, within GFF4100 at 1.402 kb on + strand, within GFF4100 at 1.403 kb on - strand, within GFF4100 at 1.403 kb on - strand, within GFF4100 at 1.556 kb on - strand, within GFF4100 at 1.618 kb on + strand, within GFF4100 at 1.619 kb on - strand, within GFF4100 at 2.714 kb on + strand, within GFF4101 at 2.715 kb on - strand, within GFF4101 at 2.715 kb on - strand, within GFF4101
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 80 + -1.7 81 - +1.1 152 - -1.0 152 - +2.7 152 - -0.2 472 + GFF4100 0.15 -1.4 473 - GFF4100 0.15 +1.7 523 + GFF4100 0.18 +0.3 602 - GFF4100 0.23 -0.5 602 - GFF4100 0.23 +2.2 889 + GFF4100 0.41 -0.3 890 - GFF4100 0.41 -0.6 890 - GFF4100 0.41 -0.2 1,009 + GFF4100 0.48 -0.5 1,195 + GFF4100 0.60 -0.3 1,196 - GFF4100 0.60 -0.6 1,213 + GFF4100 0.61 -1.2 1,312 + GFF4100 0.67 -0.2 1,313 - GFF4100 0.67 +0.2 1,402 + GFF4100 0.73 +0.1 1,402 + GFF4100 0.73 +0.3 1,403 - GFF4100 0.73 +0.1 1,403 - GFF4100 0.73 +0.1 1,556 - GFF4100 0.83 +1.1 1,618 + GFF4100 0.86 +1.5 1,619 - GFF4100 0.86 +0.5 2,714 + GFF4101 0.48 -0.5 2,715 - GFF4101 0.48 -0.3 2,715 - GFF4101 0.48 -0.2
Or see this region's nucleotide sequence