Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4057 and GFF4058 overlap by 4 nucleotides GFF4058 and GFF4059 are separated by 137 nucleotides GFF4059 and GFF4060 are separated by 263 nucleotides
GFF4057 - Copper/silver efflux RND transporter, membrane fusion protein CusB, at 269,944 to 271,647
GFF4057
GFF4058 - Copper/silver efflux RND transporter, outer membrane protein CusC, at 271,644 to 272,999
GFF4058
GFF4059 - hypothetical protein, at 273,137 to 273,583
GFF4059
GFF4060 - hypothetical protein, at 273,847 to 274,296
GFF4060
Position (kb) 271
272
273 Strain fitness (log2 ratio) -1
0
1 at 271.371 kb on - strand, within GFF4057 at 271.577 kb on + strand at 271.577 kb on + strand at 271.578 kb on - strand at 271.578 kb on - strand at 271.900 kb on + strand, within GFF4058 at 271.900 kb on + strand, within GFF4058 at 272.055 kb on + strand, within GFF4058 at 272.120 kb on - strand, within GFF4058 at 272.120 kb on - strand, within GFF4058 at 272.123 kb on + strand, within GFF4058 at 272.123 kb on + strand, within GFF4058 at 272.123 kb on + strand, within GFF4058 at 272.123 kb on + strand, within GFF4058 at 272.522 kb on - strand, within GFF4058 at 272.577 kb on - strand, within GFF4058 at 272.727 kb on + strand, within GFF4058 at 272.728 kb on - strand, within GFF4058 at 272.728 kb on - strand, within GFF4058 at 273.024 kb on + strand at 273.258 kb on + strand, within GFF4059 at 273.259 kb on - strand, within GFF4059 at 273.259 kb on - strand, within GFF4059 at 273.425 kb on + strand, within GFF4059 at 273.454 kb on + strand, within GFF4059 at 273.455 kb on - strand, within GFF4059 at 273.455 kb on - strand, within GFF4059 at 273.455 kb on - strand, within GFF4059 at 273.505 kb on - strand, within GFF4059 at 273.733 kb on + strand at 273.948 kb on - strand, within GFF4060
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 271,371 - GFF4057 0.84 -0.1 271,577 + +0.6 271,577 + -1.3 271,578 - +0.2 271,578 - +0.1 271,900 + GFF4058 0.19 -0.7 271,900 + GFF4058 0.19 +0.7 272,055 + GFF4058 0.30 -0.2 272,120 - GFF4058 0.35 +0.5 272,120 - GFF4058 0.35 -0.6 272,123 + GFF4058 0.35 +1.2 272,123 + GFF4058 0.35 +0.2 272,123 + GFF4058 0.35 -0.4 272,123 + GFF4058 0.35 -0.2 272,522 - GFF4058 0.65 -0.8 272,577 - GFF4058 0.69 -1.2 272,727 + GFF4058 0.80 +0.8 272,728 - GFF4058 0.80 +0.2 272,728 - GFF4058 0.80 +0.0 273,024 + -0.1 273,258 + GFF4059 0.27 +0.1 273,259 - GFF4059 0.27 +0.2 273,259 - GFF4059 0.27 -0.2 273,425 + GFF4059 0.64 +1.0 273,454 + GFF4059 0.71 -1.0 273,455 - GFF4059 0.71 +0.0 273,455 - GFF4059 0.71 -0.2 273,455 - GFF4059 0.71 -0.0 273,505 - GFF4059 0.82 -0.5 273,733 + -0.1 273,948 - GFF4060 0.22 +0.3
Or see this region's nucleotide sequence