Strain Fitness in Variovorax sp. SCN45 around GFF4021

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4019 and GFF4020 overlap by 11 nucleotidesGFF4020 and GFF4021 are separated by 16 nucleotidesGFF4021 and GFF4022 are separated by 138 nucleotidesGFF4022 and GFF4023 are separated by 264 nucleotides GFF4019 - Arsenical-resistance protein ACR3, at 227,349 to 228,407 GFF4019 GFF4020 - Arsenic resistance protein ArsH, at 228,397 to 229,110 GFF4020 GFF4021 - Uncharacterized MFS-type transporter, at 229,127 to 230,326 GFF4021 GFF4022 - UPF0060 membrane protein YnfA, at 230,465 to 230,800 GFF4022 GFF4023 - no description, at 231,065 to 231,217 GFF4023 Position (kb) 229 230 231Strain fitness (log2 ratio) -2 -1 0 1 2 3at 228.396 kb on + strandat 228.397 kb on - strandat 228.397 kb on - strandat 228.505 kb on + strand, within GFF4020at 228.505 kb on + strand, within GFF4020at 228.529 kb on + strand, within GFF4020at 228.962 kb on - strand, within GFF4020at 228.964 kb on + strand, within GFF4020at 228.965 kb on - strand, within GFF4020at 228.965 kb on - strand, within GFF4020at 229.049 kb on - strandat 229.049 kb on - strandat 229.049 kb on - strandat 229.193 kb on + strandat 229.193 kb on + strandat 229.193 kb on + strandat 229.194 kb on - strandat 229.194 kb on - strandat 229.194 kb on - strandat 229.194 kb on - strandat 229.196 kb on + strandat 229.196 kb on + strandat 229.196 kb on + strandat 229.196 kb on + strandat 229.197 kb on - strandat 229.352 kb on - strand, within GFF4021at 229.408 kb on + strand, within GFF4021at 229.408 kb on + strand, within GFF4021at 229.408 kb on + strand, within GFF4021at 229.408 kb on + strand, within GFF4021at 229.466 kb on + strand, within GFF4021at 229.466 kb on + strand, within GFF4021at 229.466 kb on + strand, within GFF4021at 229.466 kb on + strand, within GFF4021at 229.466 kb on + strand, within GFF4021at 229.467 kb on - strand, within GFF4021at 229.467 kb on - strand, within GFF4021at 229.491 kb on + strand, within GFF4021at 229.491 kb on + strand, within GFF4021at 229.491 kb on + strand, within GFF4021at 229.492 kb on - strand, within GFF4021at 229.785 kb on - strand, within GFF4021at 229.785 kb on - strand, within GFF4021at 229.785 kb on - strand, within GFF4021at 229.785 kb on - strand, within GFF4021at 229.928 kb on + strand, within GFF4021at 230.197 kb on + strand, within GFF4021at 230.528 kb on + strand, within GFF4022at 230.595 kb on + strand, within GFF4022at 230.596 kb on - strand, within GFF4022at 230.596 kb on - strand, within GFF4022at 230.596 kb on - strand, within GFF4022at 230.596 kb on - strand, within GFF4022at 230.608 kb on - strand, within GFF4022at 230.616 kb on + strand, within GFF4022at 230.616 kb on + strand, within GFF4022at 230.616 kb on + strand, within GFF4022at 230.617 kb on - strand, within GFF4022at 230.617 kb on - strand, within GFF4022at 230.642 kb on + strand, within GFF4022at 230.727 kb on + strand, within GFF4022at 230.727 kb on + strand, within GFF4022at 230.728 kb on - strand, within GFF4022at 230.728 kb on - strand, within GFF4022at 230.732 kb on + strand, within GFF4022at 230.732 kb on + strand, within GFF4022at 230.732 kb on + strand, within GFF4022at 230.732 kb on + strand, within GFF4022at 230.732 kb on + strand, within GFF4022at 230.732 kb on + strand, within GFF4022at 230.732 kb on + strand, within GFF4022at 230.732 kb on + strand, within GFF4022at 230.733 kb on - strand, within GFF4022at 230.737 kb on - strand, within GFF4022at 230.737 kb on - strand, within GFF4022at 230.737 kb on - strand, within GFF4022at 230.737 kb on - strand, within GFF4022at 230.885 kb on + strandat 230.897 kb on + strandat 230.897 kb on + strandat 230.898 kb on - strandat 230.898 kb on - strandat 230.898 kb on - strandat 230.898 kb on - strandat 230.898 kb on - strandat 230.898 kb on - strandat 230.942 kb on + strandat 230.942 kb on + strandat 230.943 kb on - strandat 230.943 kb on - strandat 230.943 kb on - strandat 230.943 kb on - strandat 230.943 kb on - strandat 230.943 kb on - strandat 230.968 kb on + strandat 230.968 kb on + strandat 231.066 kb on + strandat 231.066 kb on + strandat 231.067 kb on - strandat 231.088 kb on + strand, within GFF4023at 231.089 kb on - strand, within GFF4023at 231.089 kb on - strand, within GFF4023at 231.303 kb on - strandat 231.303 kb on - strandat 231.303 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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228,396 + -0.0
228,397 - +0.5
228,397 - -1.1
228,505 + GFF4020 0.15 -1.5
228,505 + GFF4020 0.15 -0.3
228,529 + GFF4020 0.18 +0.2
228,962 - GFF4020 0.79 -0.1
228,964 + GFF4020 0.79 -0.8
228,965 - GFF4020 0.80 -0.1
228,965 - GFF4020 0.80 -0.7
229,049 - -0.2
229,049 - -0.3
229,049 - +0.2
229,193 + -1.3
229,193 + +1.8
229,193 + +0.6
229,194 - -0.3
229,194 - -0.3
229,194 - +0.2
229,194 - +0.2
229,196 + +1.6
229,196 + -0.2
229,196 + +0.4
229,196 + +1.0
229,197 - +3.4
229,352 - GFF4021 0.19 -0.1
229,408 + GFF4021 0.23 +1.8
229,408 + GFF4021 0.23 +0.6
229,408 + GFF4021 0.23 -0.3
229,408 + GFF4021 0.23 -0.9
229,466 + GFF4021 0.28 +1.2
229,466 + GFF4021 0.28 +0.3
229,466 + GFF4021 0.28 -1.0
229,466 + GFF4021 0.28 +0.3
229,466 + GFF4021 0.28 -0.2
229,467 - GFF4021 0.28 +0.2
229,467 - GFF4021 0.28 -0.2
229,491 + GFF4021 0.30 +0.4
229,491 + GFF4021 0.30 -0.1
229,491 + GFF4021 0.30 +0.8
229,492 - GFF4021 0.30 +0.7
229,785 - GFF4021 0.55 -1.3
229,785 - GFF4021 0.55 -0.4
229,785 - GFF4021 0.55 +0.8
229,785 - GFF4021 0.55 +0.8
229,928 + GFF4021 0.67 +0.5
230,197 + GFF4021 0.89 -0.3
230,528 + GFF4022 0.19 +0.7
230,595 + GFF4022 0.39 -0.2
230,596 - GFF4022 0.39 -0.3
230,596 - GFF4022 0.39 -0.5
230,596 - GFF4022 0.39 +0.2
230,596 - GFF4022 0.39 +0.1
230,608 - GFF4022 0.43 -1.2
230,616 + GFF4022 0.45 +0.2
230,616 + GFF4022 0.45 +0.2
230,616 + GFF4022 0.45 +1.2
230,617 - GFF4022 0.45 -1.7
230,617 - GFF4022 0.45 -0.7
230,642 + GFF4022 0.53 -0.1
230,727 + GFF4022 0.78 -1.2
230,727 + GFF4022 0.78 +0.1
230,728 - GFF4022 0.78 -0.3
230,728 - GFF4022 0.78 +1.0
230,732 + GFF4022 0.79 +0.0
230,732 + GFF4022 0.79 -0.1
230,732 + GFF4022 0.79 +0.3
230,732 + GFF4022 0.79 -0.0
230,732 + GFF4022 0.79 -0.3
230,732 + GFF4022 0.79 +0.8
230,732 + GFF4022 0.79 +0.8
230,732 + GFF4022 0.79 +0.2
230,733 - GFF4022 0.80 +0.5
230,737 - GFF4022 0.81 +0.4
230,737 - GFF4022 0.81 -0.3
230,737 - GFF4022 0.81 -0.4
230,737 - GFF4022 0.81 +0.7
230,885 + -1.9
230,897 + -1.3
230,897 + -0.1
230,898 - +0.1
230,898 - -0.6
230,898 - +0.7
230,898 - +0.3
230,898 - -0.1
230,898 - +0.4
230,942 + -0.1
230,942 + -0.0
230,943 - +0.7
230,943 - -0.3
230,943 - +0.3
230,943 - +0.7
230,943 - -0.1
230,943 - -0.2
230,968 + +1.3
230,968 + -0.6
231,066 + +0.3
231,066 + +0.5
231,067 - +0.3
231,088 + GFF4023 0.15 -0.1
231,089 - GFF4023 0.16 -0.6
231,089 - GFF4023 0.16 -0.4
231,303 - -0.2
231,303 - +0.2
231,303 - +0.0

Or see this region's nucleotide sequence