Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4016 and GFF4017 overlap by 8 nucleotides GFF4017 and GFF4018 overlap by 4 nucleotides GFF4018 and GFF4019 are separated by 4 nucleotides
GFF4016 - Arsenate reductase (EC 1.20.4.1), at 225,986 to 226,357
GFF4016
GFF4017 - Arsenate reductase (EC 1.20.4.4) thioredoxin-coupled, LMWP family, at 226,350 to 226,859
GFF4017
GFF4018 - Arsenate reductase (EC 1.20.4.4) thioredoxin-coupled, LMWP family, at 226,856 to 227,344
GFF4018
GFF4019 - Arsenical-resistance protein ACR3, at 227,349 to 228,407
GFF4019
Position (kb) 226
227
228 Strain fitness (log2 ratio) -2
-1
0
1
2 at 226.165 kb on - strand, within GFF4016 at 226.423 kb on + strand, within GFF4017 at 226.423 kb on + strand, within GFF4017 at 226.423 kb on + strand, within GFF4017 at 226.424 kb on - strand, within GFF4017 at 226.424 kb on - strand, within GFF4017 at 226.424 kb on - strand, within GFF4017 at 226.458 kb on + strand, within GFF4017 at 226.458 kb on + strand, within GFF4017 at 226.458 kb on + strand, within GFF4017 at 226.458 kb on + strand, within GFF4017 at 226.458 kb on + strand, within GFF4017 at 226.459 kb on - strand, within GFF4017 at 226.459 kb on - strand, within GFF4017 at 226.497 kb on + strand, within GFF4017 at 226.497 kb on + strand, within GFF4017 at 226.498 kb on - strand, within GFF4017 at 226.716 kb on - strand, within GFF4017 at 226.869 kb on + strand at 226.869 kb on + strand at 226.869 kb on + strand at 226.869 kb on + strand at 226.869 kb on + strand at 226.869 kb on + strand at 226.869 kb on + strand at 226.869 kb on + strand at 226.870 kb on - strand at 226.870 kb on - strand at 226.870 kb on - strand at 226.870 kb on - strand at 226.870 kb on - strand at 227.138 kb on + strand, within GFF4018 at 227.138 kb on + strand, within GFF4018 at 227.252 kb on + strand, within GFF4018 at 227.410 kb on - strand at 227.730 kb on + strand, within GFF4019 at 227.730 kb on + strand, within GFF4019 at 227.730 kb on + strand, within GFF4019 at 227.730 kb on + strand, within GFF4019 at 227.730 kb on + strand, within GFF4019 at 227.730 kb on + strand, within GFF4019 at 227.946 kb on + strand, within GFF4019 at 227.947 kb on - strand, within GFF4019 at 227.947 kb on - strand, within GFF4019
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 226,165 - GFF4016 0.48 +2.2 226,423 + GFF4017 0.14 +0.3 226,423 + GFF4017 0.14 -1.1 226,423 + GFF4017 0.14 +0.4 226,424 - GFF4017 0.15 +0.5 226,424 - GFF4017 0.15 +0.1 226,424 - GFF4017 0.15 +0.3 226,458 + GFF4017 0.21 -0.7 226,458 + GFF4017 0.21 -0.0 226,458 + GFF4017 0.21 +0.3 226,458 + GFF4017 0.21 +0.6 226,458 + GFF4017 0.21 +0.0 226,459 - GFF4017 0.21 +0.7 226,459 - GFF4017 0.21 -0.5 226,497 + GFF4017 0.29 -0.3 226,497 + GFF4017 0.29 +0.1 226,498 - GFF4017 0.29 +0.8 226,716 - GFF4017 0.72 -0.3 226,869 + -0.8 226,869 + +0.4 226,869 + -0.1 226,869 + +0.1 226,869 + +1.5 226,869 + +1.8 226,869 + -0.9 226,869 + -0.4 226,870 - -0.0 226,870 - +0.2 226,870 - +1.0 226,870 - +0.6 226,870 - -0.4 227,138 + GFF4018 0.58 +0.4 227,138 + GFF4018 0.58 -0.1 227,252 + GFF4018 0.81 +1.8 227,410 - -1.9 227,730 + GFF4019 0.36 +0.1 227,730 + GFF4019 0.36 +0.8 227,730 + GFF4019 0.36 -0.7 227,730 + GFF4019 0.36 -0.0 227,730 + GFF4019 0.36 -1.3 227,730 + GFF4019 0.36 +0.1 227,946 + GFF4019 0.56 +0.1 227,947 - GFF4019 0.56 +0.4 227,947 - GFF4019 0.56 +0.8
Or see this region's nucleotide sequence