Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4009 and GFF4010 are separated by 214 nucleotides GFF4010 and GFF4011 overlap by 4 nucleotides
GFF4009 - D-amino acid dehydrogenase (EC 1.4.99.6), at 216,917 to 218,128
GFF4009
GFF4010 - no description, at 218,343 to 219,683
GFF4010
GFF4011 - no description, at 219,680 to 220,813
GFF4011
Position (kb) 218
219
220 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 217.560 kb on + strand, within GFF4009 at 217.561 kb on - strand, within GFF4009 at 217.710 kb on + strand, within GFF4009 at 217.710 kb on + strand, within GFF4009 at 217.710 kb on + strand, within GFF4009 at 217.710 kb on + strand, within GFF4009 at 217.710 kb on + strand, within GFF4009 at 217.710 kb on + strand, within GFF4009 at 217.710 kb on + strand, within GFF4009 at 217.710 kb on + strand, within GFF4009 at 217.711 kb on - strand, within GFF4009 at 217.711 kb on - strand, within GFF4009 at 217.711 kb on - strand, within GFF4009 at 217.711 kb on - strand, within GFF4009 at 217.711 kb on - strand, within GFF4009 at 217.711 kb on - strand, within GFF4009 at 217.711 kb on - strand, within GFF4009 at 217.711 kb on - strand, within GFF4009 at 217.711 kb on - strand, within GFF4009 at 217.980 kb on + strand, within GFF4009 at 217.980 kb on + strand, within GFF4009 at 217.980 kb on + strand, within GFF4009 at 217.980 kb on + strand, within GFF4009 at 217.980 kb on + strand, within GFF4009 at 217.980 kb on + strand, within GFF4009 at 217.980 kb on + strand, within GFF4009 at 217.980 kb on + strand, within GFF4009 at 217.981 kb on - strand, within GFF4009 at 217.981 kb on - strand, within GFF4009 at 217.981 kb on - strand, within GFF4009 at 217.986 kb on + strand, within GFF4009 at 217.986 kb on + strand, within GFF4009 at 217.986 kb on + strand, within GFF4009 at 217.986 kb on + strand, within GFF4009 at 217.986 kb on + strand, within GFF4009 at 217.986 kb on + strand, within GFF4009 at 217.987 kb on - strand, within GFF4009 at 217.987 kb on - strand, within GFF4009 at 217.987 kb on - strand, within GFF4009 at 217.987 kb on - strand, within GFF4009 at 217.987 kb on - strand, within GFF4009 at 217.987 kb on - strand, within GFF4009 at 217.987 kb on - strand, within GFF4009 at 217.987 kb on - strand, within GFF4009 at 217.987 kb on - strand, within GFF4009 at 217.987 kb on - strand, within GFF4009 at 218.186 kb on + strand at 218.187 kb on - strand at 218.187 kb on - strand at 218.187 kb on - strand at 218.212 kb on + strand at 218.213 kb on - strand at 218.213 kb on - strand at 218.235 kb on + strand at 218.236 kb on - strand at 218.244 kb on + strand at 218.244 kb on + strand at 218.244 kb on + strand at 218.244 kb on + strand at 218.244 kb on + strand at 218.244 kb on + strand at 218.244 kb on + strand at 218.244 kb on + strand at 218.245 kb on - strand at 218.245 kb on - strand at 218.245 kb on - strand at 218.245 kb on - strand at 218.245 kb on - strand at 218.245 kb on - strand at 218.245 kb on - strand at 218.245 kb on - strand at 218.245 kb on - strand at 218.245 kb on - strand at 218.263 kb on + strand at 218.263 kb on + strand at 218.263 kb on + strand at 218.263 kb on + strand at 218.264 kb on - strand at 218.264 kb on - strand at 218.264 kb on - strand at 218.264 kb on - strand at 218.270 kb on + strand at 218.270 kb on + strand at 218.344 kb on + strand at 218.344 kb on + strand at 218.344 kb on + strand at 218.345 kb on - strand at 218.345 kb on - strand at 218.345 kb on - strand at 218.345 kb on - strand at 218.345 kb on - strand at 218.466 kb on - strand at 218.466 kb on - strand at 218.682 kb on + strand, within GFF4010 at 218.682 kb on + strand, within GFF4010 at 218.683 kb on - strand, within GFF4010 at 218.683 kb on - strand, within GFF4010 at 218.735 kb on + strand, within GFF4010 at 218.736 kb on - strand, within GFF4010 at 218.736 kb on - strand, within GFF4010 at 218.958 kb on + strand, within GFF4010 at 218.959 kb on - strand, within GFF4010 at 218.959 kb on - strand, within GFF4010 at 218.959 kb on - strand, within GFF4010 at 219.176 kb on + strand, within GFF4010 at 219.176 kb on + strand, within GFF4010 at 219.176 kb on + strand, within GFF4010 at 219.176 kb on + strand, within GFF4010 at 219.177 kb on - strand, within GFF4010 at 219.177 kb on - strand, within GFF4010 at 219.177 kb on - strand, within GFF4010 at 219.177 kb on - strand, within GFF4010 at 219.213 kb on + strand, within GFF4010 at 219.213 kb on + strand, within GFF4010 at 219.213 kb on + strand, within GFF4010 at 219.214 kb on - strand, within GFF4010 at 219.214 kb on - strand, within GFF4010 at 219.214 kb on - strand, within GFF4010 at 219.214 kb on - strand, within GFF4010 at 219.214 kb on - strand, within GFF4010 at 219.222 kb on + strand, within GFF4010 at 219.222 kb on + strand, within GFF4010 at 219.222 kb on + strand, within GFF4010 at 219.223 kb on - strand, within GFF4010 at 219.223 kb on - strand, within GFF4010 at 219.223 kb on - strand, within GFF4010 at 219.223 kb on - strand, within GFF4010 at 219.223 kb on - strand, within GFF4010 at 219.234 kb on - strand, within GFF4010 at 219.292 kb on + strand, within GFF4010 at 219.293 kb on - strand, within GFF4010 at 219.429 kb on + strand, within GFF4010 at 219.429 kb on + strand, within GFF4010 at 219.438 kb on - strand, within GFF4010 at 219.438 kb on - strand, within GFF4010 at 219.450 kb on - strand, within GFF4010 at 219.456 kb on + strand, within GFF4010 at 219.457 kb on - strand, within GFF4010 at 219.482 kb on + strand, within GFF4010 at 219.482 kb on + strand, within GFF4010 at 219.483 kb on - strand, within GFF4010 at 219.483 kb on - strand, within GFF4010 at 219.483 kb on - strand, within GFF4010 at 219.483 kb on - strand, within GFF4010 at 219.483 kb on - strand, within GFF4010 at 219.484 kb on - strand, within GFF4010 at 219.532 kb on + strand, within GFF4010 at 219.532 kb on + strand, within GFF4010 at 219.532 kb on + strand, within GFF4010 at 219.532 kb on + strand, within GFF4010 at 219.532 kb on + strand, within GFF4010 at 219.532 kb on + strand, within GFF4010 at 219.532 kb on + strand, within GFF4010 at 219.532 kb on + strand, within GFF4010 at 219.532 kb on + strand, within GFF4010 at 219.532 kb on + strand, within GFF4010 at 219.533 kb on - strand, within GFF4010 at 219.533 kb on - strand, within GFF4010 at 219.533 kb on - strand, within GFF4010 at 219.533 kb on - strand, within GFF4010 at 219.579 kb on + strand at 219.579 kb on + strand at 219.579 kb on + strand at 219.579 kb on + strand at 219.579 kb on + strand at 219.579 kb on + strand at 219.579 kb on + strand at 219.579 kb on + strand at 219.579 kb on + strand at 219.579 kb on + strand at 219.579 kb on + strand at 219.579 kb on + strand at 219.579 kb on + strand at 219.579 kb on + strand at 219.579 kb on + strand at 219.579 kb on + strand at 219.579 kb on + strand at 219.579 kb on + strand at 219.579 kb on + strand at 219.579 kb on + strand at 219.579 kb on + strand at 219.579 kb on + strand at 219.579 kb on + strand at 219.579 kb on + strand at 219.579 kb on + strand at 219.579 kb on + strand at 219.579 kb on + strand at 219.579 kb on + strand at 219.579 kb on + strand at 219.579 kb on + strand at 219.580 kb on - strand at 219.580 kb on - strand at 219.580 kb on - strand at 219.580 kb on - strand at 219.580 kb on - strand at 219.580 kb on - strand at 219.580 kb on - strand at 219.580 kb on - strand at 219.580 kb on - strand at 219.580 kb on - strand at 219.580 kb on - strand at 219.580 kb on - strand at 219.580 kb on - strand at 219.580 kb on - strand at 219.580 kb on - strand at 219.580 kb on - strand at 219.580 kb on - strand at 219.580 kb on - strand at 219.580 kb on - strand at 219.580 kb on - strand at 219.580 kb on - strand at 219.580 kb on - strand at 219.664 kb on + strand at 219.665 kb on - strand at 219.665 kb on - strand at 219.671 kb on + strand at 219.671 kb on + strand at 219.671 kb on + strand at 219.671 kb on + strand at 219.671 kb on + strand at 219.672 kb on - strand at 219.729 kb on - strand at 219.729 kb on - strand at 219.729 kb on - strand at 219.821 kb on + strand, within GFF4011 at 219.822 kb on - strand, within GFF4011 at 219.822 kb on - strand, within GFF4011 at 219.822 kb on - strand, within GFF4011 at 219.841 kb on + strand, within GFF4011 at 219.842 kb on - strand, within GFF4011 at 219.975 kb on + strand, within GFF4011 at 219.976 kb on - strand, within GFF4011 at 219.976 kb on - strand, within GFF4011 at 220.018 kb on + strand, within GFF4011 at 220.119 kb on + strand, within GFF4011 at 220.220 kb on + strand, within GFF4011 at 220.231 kb on - strand, within GFF4011 at 220.241 kb on + strand, within GFF4011 at 220.258 kb on + strand, within GFF4011 at 220.259 kb on - strand, within GFF4011 at 220.288 kb on + strand, within GFF4011 at 220.289 kb on - strand, within GFF4011 at 220.289 kb on - strand, within GFF4011 at 220.331 kb on + strand, within GFF4011 at 220.631 kb on + strand, within GFF4011 at 220.631 kb on + strand, within GFF4011 at 220.631 kb on + strand, within GFF4011 at 220.631 kb on + strand, within GFF4011 at 220.631 kb on + strand, within GFF4011 at 220.631 kb on + strand, within GFF4011 at 220.631 kb on + strand, within GFF4011 at 220.631 kb on + strand, within GFF4011 at 220.631 kb on + strand, within GFF4011 at 220.631 kb on + strand, within GFF4011 at 220.632 kb on - strand, within GFF4011 at 220.632 kb on - strand, within GFF4011 at 220.632 kb on - strand, within GFF4011 at 220.632 kb on - strand, within GFF4011 at 220.632 kb on - strand, within GFF4011 at 220.632 kb on - strand, within GFF4011 at 220.632 kb on - strand, within GFF4011 at 220.632 kb on - strand, within GFF4011 at 220.662 kb on + strand, within GFF4011 at 220.662 kb on + strand, within GFF4011 at 220.662 kb on + strand, within GFF4011
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 217,560 + GFF4009 0.53 +1.1 217,561 - GFF4009 0.53 -0.5 217,710 + GFF4009 0.65 -1.2 217,710 + GFF4009 0.65 +0.5 217,710 + GFF4009 0.65 +0.3 217,710 + GFF4009 0.65 +2.1 217,710 + GFF4009 0.65 +0.4 217,710 + GFF4009 0.65 +0.3 217,710 + GFF4009 0.65 +0.3 217,710 + GFF4009 0.65 +0.1 217,711 - GFF4009 0.66 -0.8 217,711 - GFF4009 0.66 +1.4 217,711 - GFF4009 0.66 -0.6 217,711 - GFF4009 0.66 +0.1 217,711 - GFF4009 0.66 +2.1 217,711 - GFF4009 0.66 +1.8 217,711 - GFF4009 0.66 -0.2 217,711 - GFF4009 0.66 +0.2 217,711 - GFF4009 0.66 -0.2 217,980 + GFF4009 0.88 +2.2 217,980 + GFF4009 0.88 +0.1 217,980 + GFF4009 0.88 +0.9 217,980 + GFF4009 0.88 -0.3 217,980 + GFF4009 0.88 -0.2 217,980 + GFF4009 0.88 +0.5 217,980 + GFF4009 0.88 -1.0 217,980 + GFF4009 0.88 -1.2 217,981 - GFF4009 0.88 +0.1 217,981 - GFF4009 0.88 +0.8 217,981 - GFF4009 0.88 -0.1 217,986 + GFF4009 0.88 -0.0 217,986 + GFF4009 0.88 -0.7 217,986 + GFF4009 0.88 +0.0 217,986 + GFF4009 0.88 +0.6 217,986 + GFF4009 0.88 +0.5 217,986 + GFF4009 0.88 -0.7 217,987 - GFF4009 0.88 +0.3 217,987 - GFF4009 0.88 -0.2 217,987 - GFF4009 0.88 +0.4 217,987 - GFF4009 0.88 -0.9 217,987 - GFF4009 0.88 +1.0 217,987 - GFF4009 0.88 -1.8 217,987 - GFF4009 0.88 +0.5 217,987 - GFF4009 0.88 -0.3 217,987 - GFF4009 0.88 +0.2 217,987 - GFF4009 0.88 -0.4 218,186 + -0.2 218,187 - -0.1 218,187 - +0.7 218,187 - +0.7 218,212 + -0.5 218,213 - -0.5 218,213 - -0.2 218,235 + +0.8 218,236 - -0.8 218,244 + +0.0 218,244 + -1.3 218,244 + -0.3 218,244 + -1.2 218,244 + -1.3 218,244 + -1.1 218,244 + +0.2 218,244 + -1.3 218,245 - +0.2 218,245 - +0.2 218,245 - -1.4 218,245 - +0.1 218,245 - +0.2 218,245 - -0.5 218,245 - +0.5 218,245 - -0.0 218,245 - -0.4 218,245 - -0.3 218,263 + +0.2 218,263 + -0.1 218,263 + +0.2 218,263 + +0.5 218,264 - +0.3 218,264 - -1.3 218,264 - -0.5 218,264 - +0.7 218,270 + +0.8 218,270 + -0.4 218,344 + +1.0 218,344 + +1.0 218,344 + -0.3 218,345 - -0.2 218,345 - -0.1 218,345 - -0.3 218,345 - -1.2 218,345 - -0.5 218,466 - -0.3 218,466 - -0.2 218,682 + GFF4010 0.25 +0.3 218,682 + GFF4010 0.25 +0.5 218,683 - GFF4010 0.25 +0.4 218,683 - GFF4010 0.25 +1.1 218,735 + GFF4010 0.29 -1.2 218,736 - GFF4010 0.29 +0.7 218,736 - GFF4010 0.29 +0.5 218,958 + GFF4010 0.46 -0.4 218,959 - GFF4010 0.46 -0.5 218,959 - GFF4010 0.46 -0.8 218,959 - GFF4010 0.46 -1.0 219,176 + GFF4010 0.62 +0.8 219,176 + GFF4010 0.62 -0.2 219,176 + GFF4010 0.62 +0.7 219,176 + GFF4010 0.62 -0.8 219,177 - GFF4010 0.62 +0.3 219,177 - GFF4010 0.62 +1.8 219,177 - GFF4010 0.62 -1.3 219,177 - GFF4010 0.62 +0.6 219,213 + GFF4010 0.65 -0.5 219,213 + GFF4010 0.65 +0.8 219,213 + GFF4010 0.65 +1.8 219,214 - GFF4010 0.65 -0.3 219,214 - GFF4010 0.65 -1.3 219,214 - GFF4010 0.65 -0.6 219,214 - GFF4010 0.65 +0.6 219,214 - GFF4010 0.65 -1.2 219,222 + GFF4010 0.66 +4.7 219,222 + GFF4010 0.66 +0.2 219,222 + GFF4010 0.66 -0.3 219,223 - GFF4010 0.66 +1.0 219,223 - GFF4010 0.66 +1.5 219,223 - GFF4010 0.66 +0.8 219,223 - GFF4010 0.66 -0.6 219,223 - GFF4010 0.66 +0.8 219,234 - GFF4010 0.66 +1.0 219,292 + GFF4010 0.71 +0.6 219,293 - GFF4010 0.71 +0.0 219,429 + GFF4010 0.81 +0.3 219,429 + GFF4010 0.81 -0.2 219,438 - GFF4010 0.82 -0.1 219,438 - GFF4010 0.82 +0.9 219,450 - GFF4010 0.83 -0.2 219,456 + GFF4010 0.83 -1.0 219,457 - GFF4010 0.83 -0.5 219,482 + GFF4010 0.85 +0.2 219,482 + GFF4010 0.85 +0.8 219,483 - GFF4010 0.85 +0.2 219,483 - GFF4010 0.85 -0.8 219,483 - GFF4010 0.85 -1.1 219,483 - GFF4010 0.85 +0.8 219,483 - GFF4010 0.85 -0.2 219,484 - GFF4010 0.85 +0.8 219,532 + GFF4010 0.89 +0.1 219,532 + GFF4010 0.89 +4.0 219,532 + GFF4010 0.89 -0.1 219,532 + GFF4010 0.89 -0.5 219,532 + GFF4010 0.89 -0.3 219,532 + GFF4010 0.89 -1.3 219,532 + GFF4010 0.89 +1.2 219,532 + GFF4010 0.89 +0.8 219,532 + GFF4010 0.89 +0.2 219,532 + GFF4010 0.89 -0.6 219,533 - GFF4010 0.89 +0.2 219,533 - GFF4010 0.89 +0.2 219,533 - GFF4010 0.89 -0.2 219,533 - GFF4010 0.89 -1.2 219,579 + -0.6 219,579 + +1.8 219,579 + -0.5 219,579 + +0.2 219,579 + -1.6 219,579 + -0.2 219,579 + +1.8 219,579 + -1.3 219,579 + -0.0 219,579 + +0.2 219,579 + +0.6 219,579 + -0.3 219,579 + -0.2 219,579 + -0.3 219,579 + +0.2 219,579 + +0.8 219,579 + +0.2 219,579 + +0.6 219,579 + +0.0 219,579 + +0.2 219,579 + +0.7 219,579 + +0.8 219,579 + -0.5 219,579 + -0.8 219,579 + +0.0 219,579 + -0.5 219,579 + -0.1 219,579 + +0.8 219,579 + -0.3 219,579 + +0.8 219,580 - -0.1 219,580 - -0.4 219,580 - +0.2 219,580 - +0.1 219,580 - -0.2 219,580 - +0.1 219,580 - -2.0 219,580 - -0.8 219,580 - +0.6 219,580 - +0.1 219,580 - +1.8 219,580 - -0.0 219,580 - -0.5 219,580 - +0.0 219,580 - +0.6 219,580 - -1.2 219,580 - -0.9 219,580 - -0.1 219,580 - -0.6 219,580 - +0.1 219,580 - +0.2 219,580 - -0.5 219,664 + +0.8 219,665 - +0.3 219,665 - -0.1 219,671 + -0.5 219,671 + +0.1 219,671 + -0.9 219,671 + +2.2 219,671 + +1.1 219,672 - +0.2 219,729 - -1.8 219,729 - +0.0 219,729 - -0.1 219,821 + GFF4011 0.12 +0.8 219,822 - GFF4011 0.13 -0.3 219,822 - GFF4011 0.13 -0.6 219,822 - GFF4011 0.13 +0.2 219,841 + GFF4011 0.14 +1.0 219,842 - GFF4011 0.14 +0.2 219,975 + GFF4011 0.26 -0.0 219,976 - GFF4011 0.26 -0.0 219,976 - GFF4011 0.26 +0.6 220,018 + GFF4011 0.30 +0.1 220,119 + GFF4011 0.39 +2.1 220,220 + GFF4011 0.48 -0.7 220,231 - GFF4011 0.49 +0.0 220,241 + GFF4011 0.49 +0.0 220,258 + GFF4011 0.51 +0.5 220,259 - GFF4011 0.51 +0.5 220,288 + GFF4011 0.54 -0.2 220,289 - GFF4011 0.54 +0.5 220,289 - GFF4011 0.54 +0.6 220,331 + GFF4011 0.57 -0.5 220,631 + GFF4011 0.84 -0.2 220,631 + GFF4011 0.84 +0.4 220,631 + GFF4011 0.84 +0.4 220,631 + GFF4011 0.84 +0.1 220,631 + GFF4011 0.84 +0.2 220,631 + GFF4011 0.84 +0.7 220,631 + GFF4011 0.84 +1.3 220,631 + GFF4011 0.84 +0.2 220,631 + GFF4011 0.84 +0.1 220,631 + GFF4011 0.84 -0.7 220,632 - GFF4011 0.84 -0.9 220,632 - GFF4011 0.84 +0.4 220,632 - GFF4011 0.84 -0.4 220,632 - GFF4011 0.84 +0.4 220,632 - GFF4011 0.84 +0.8 220,632 - GFF4011 0.84 +0.8 220,632 - GFF4011 0.84 +0.8 220,632 - GFF4011 0.84 -0.0 220,662 + GFF4011 0.87 -0.0 220,662 + GFF4011 0.87 +0.8 220,662 + GFF4011 0.87 +0.8
Or see this region's nucleotide sequence