Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF38 and GFF39 are separated by 44 nucleotides GFF39 and GFF40 are separated by 76 nucleotides GFF40 and GFF41 are separated by 180 nucleotides GFF41 and GFF42 are separated by 69 nucleotides
GFF38 - no description, at 41,208 to 41,465
GFF38
GFF39 - Transcriptional regulator, LysR family, at 41,510 to 42,370
GFF39
GFF40 - no description, at 42,447 to 43,592
GFF40
GFF41 - no description, at 43,773 to 44,096
GFF41
GFF42 - hypothetical protein, at 44,166 to 44,612
GFF42
Position (kb) 42
43
44 Strain fitness (log2 ratio) -2
-1
0
1
2 at 41.526 kb on + strand at 41.526 kb on + strand at 41.526 kb on + strand at 41.526 kb on + strand at 41.527 kb on - strand at 41.527 kb on - strand at 41.527 kb on - strand at 41.623 kb on - strand, within GFF39 at 41.739 kb on + strand, within GFF39 at 41.740 kb on - strand, within GFF39 at 41.740 kb on - strand, within GFF39 at 41.961 kb on + strand, within GFF39 at 41.961 kb on + strand, within GFF39 at 41.961 kb on + strand, within GFF39 at 41.962 kb on - strand, within GFF39 at 42.096 kb on + strand, within GFF39 at 42.096 kb on + strand, within GFF39 at 42.096 kb on + strand, within GFF39 at 42.096 kb on + strand, within GFF39 at 42.097 kb on - strand, within GFF39 at 42.097 kb on - strand, within GFF39 at 42.097 kb on - strand, within GFF39 at 42.097 kb on - strand, within GFF39 at 42.102 kb on + strand, within GFF39 at 42.297 kb on + strand at 42.297 kb on + strand at 42.297 kb on + strand at 42.298 kb on - strand at 42.298 kb on - strand at 42.408 kb on + strand at 42.408 kb on + strand at 42.408 kb on + strand at 42.408 kb on + strand at 42.408 kb on + strand at 42.409 kb on - strand at 42.409 kb on - strand at 42.409 kb on - strand at 42.409 kb on - strand at 42.409 kb on - strand at 42.640 kb on + strand, within GFF40 at 42.641 kb on - strand, within GFF40 at 42.715 kb on + strand, within GFF40 at 42.715 kb on + strand, within GFF40 at 42.715 kb on + strand, within GFF40 at 42.715 kb on + strand, within GFF40 at 42.715 kb on + strand, within GFF40 at 42.715 kb on + strand, within GFF40 at 42.716 kb on - strand, within GFF40 at 42.716 kb on - strand, within GFF40 at 42.716 kb on - strand, within GFF40 at 42.716 kb on - strand, within GFF40 at 42.716 kb on - strand, within GFF40 at 42.716 kb on - strand, within GFF40 at 42.716 kb on - strand, within GFF40 at 42.716 kb on - strand, within GFF40 at 42.721 kb on + strand, within GFF40 at 42.751 kb on - strand, within GFF40 at 42.784 kb on + strand, within GFF40 at 42.784 kb on + strand, within GFF40 at 42.970 kb on + strand, within GFF40 at 43.039 kb on + strand, within GFF40 at 43.039 kb on + strand, within GFF40 at 43.039 kb on + strand, within GFF40 at 43.039 kb on + strand, within GFF40 at 43.039 kb on + strand, within GFF40 at 43.039 kb on + strand, within GFF40 at 43.039 kb on + strand, within GFF40 at 43.039 kb on + strand, within GFF40 at 43.040 kb on - strand, within GFF40 at 43.040 kb on - strand, within GFF40 at 43.165 kb on + strand, within GFF40 at 43.166 kb on - strand, within GFF40 at 43.343 kb on - strand, within GFF40 at 43.343 kb on - strand, within GFF40 at 43.534 kb on + strand at 43.534 kb on + strand at 43.534 kb on + strand at 43.534 kb on + strand at 43.534 kb on + strand at 43.534 kb on + strand at 43.534 kb on + strand at 43.535 kb on - strand at 43.535 kb on - strand at 43.535 kb on - strand at 43.537 kb on + strand at 43.583 kb on + strand at 43.584 kb on - strand at 43.615 kb on + strand at 43.616 kb on - strand at 43.628 kb on + strand at 43.628 kb on + strand at 43.628 kb on + strand at 43.628 kb on + strand at 43.628 kb on + strand at 43.628 kb on + strand at 43.628 kb on + strand at 43.628 kb on + strand at 43.628 kb on + strand at 43.628 kb on + strand at 43.628 kb on + strand at 43.628 kb on + strand at 43.628 kb on + strand at 43.629 kb on - strand at 43.629 kb on - strand at 43.629 kb on - strand at 43.629 kb on - strand at 43.629 kb on - strand at 43.629 kb on - strand at 43.629 kb on - strand at 43.857 kb on + strand, within GFF41 at 43.857 kb on + strand, within GFF41 at 43.857 kb on + strand, within GFF41 at 43.857 kb on + strand, within GFF41 at 43.858 kb on - strand, within GFF41 at 43.885 kb on + strand, within GFF41 at 43.897 kb on + strand, within GFF41 at 44.085 kb on + strand at 44.085 kb on + strand at 44.085 kb on + strand at 44.086 kb on - strand at 44.141 kb on + strand at 44.142 kb on - strand at 44.142 kb on - strand at 44.197 kb on + strand at 44.197 kb on + strand at 44.197 kb on + strand at 44.197 kb on + strand at 44.197 kb on + strand at 44.197 kb on + strand at 44.198 kb on - strand at 44.198 kb on - strand at 44.198 kb on - strand at 44.198 kb on - strand at 44.198 kb on - strand at 44.198 kb on - strand at 44.198 kb on - strand at 44.269 kb on - strand, within GFF42 at 44.508 kb on - strand, within GFF42 at 44.554 kb on + strand, within GFF42 at 44.554 kb on + strand, within GFF42 at 44.554 kb on + strand, within GFF42 at 44.554 kb on + strand, within GFF42 at 44.554 kb on + strand, within GFF42 at 44.555 kb on - strand, within GFF42 at 44.555 kb on - strand, within GFF42 at 44.555 kb on - strand, within GFF42 at 44.555 kb on - strand, within GFF42 at 44.555 kb on - strand, within GFF42 at 44.555 kb on - strand, within GFF42
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 41,526 + +0.1 41,526 + -0.7 41,526 + -0.3 41,526 + -0.4 41,527 - +0.1 41,527 - +1.4 41,527 - +0.6 41,623 - GFF39 0.13 -0.8 41,739 + GFF39 0.27 -0.4 41,740 - GFF39 0.27 -1.2 41,740 - GFF39 0.27 -0.7 41,961 + GFF39 0.52 -0.2 41,961 + GFF39 0.52 +0.2 41,961 + GFF39 0.52 -0.3 41,962 - GFF39 0.52 -0.9 42,096 + GFF39 0.68 +0.3 42,096 + GFF39 0.68 -1.0 42,096 + GFF39 0.68 -0.3 42,096 + GFF39 0.68 +0.2 42,097 - GFF39 0.68 +0.4 42,097 - GFF39 0.68 +0.2 42,097 - GFF39 0.68 -1.2 42,097 - GFF39 0.68 -0.9 42,102 + GFF39 0.69 -0.3 42,297 + +0.8 42,297 + +1.0 42,297 + +0.6 42,298 - -1.3 42,298 - +0.2 42,408 + -0.1 42,408 + -1.7 42,408 + -0.5 42,408 + -0.5 42,408 + -1.0 42,409 - -0.8 42,409 - -0.7 42,409 - -0.1 42,409 - -0.3 42,409 - -0.6 42,640 + GFF40 0.17 +0.3 42,641 - GFF40 0.17 +1.6 42,715 + GFF40 0.23 +0.2 42,715 + GFF40 0.23 -0.7 42,715 + GFF40 0.23 +0.3 42,715 + GFF40 0.23 +0.4 42,715 + GFF40 0.23 -0.7 42,715 + GFF40 0.23 -0.2 42,716 - GFF40 0.23 -0.4 42,716 - GFF40 0.23 +0.4 42,716 - GFF40 0.23 -0.2 42,716 - GFF40 0.23 -0.8 42,716 - GFF40 0.23 -0.7 42,716 - GFF40 0.23 -1.0 42,716 - GFF40 0.23 -0.4 42,716 - GFF40 0.23 -1.3 42,721 + GFF40 0.24 +0.7 42,751 - GFF40 0.27 -0.2 42,784 + GFF40 0.29 +0.2 42,784 + GFF40 0.29 -0.1 42,970 + GFF40 0.46 +0.5 43,039 + GFF40 0.52 -1.4 43,039 + GFF40 0.52 -1.3 43,039 + GFF40 0.52 +0.3 43,039 + GFF40 0.52 -0.2 43,039 + GFF40 0.52 +2.4 43,039 + GFF40 0.52 +0.9 43,039 + GFF40 0.52 -0.1 43,039 + GFF40 0.52 +0.1 43,040 - GFF40 0.52 -0.1 43,040 - GFF40 0.52 -0.6 43,165 + GFF40 0.63 -0.0 43,166 - GFF40 0.63 +0.2 43,343 - GFF40 0.78 +0.2 43,343 - GFF40 0.78 +0.1 43,534 + -0.4 43,534 + +1.1 43,534 + +0.5 43,534 + -0.6 43,534 + -0.1 43,534 + -0.5 43,534 + -0.7 43,535 - -0.6 43,535 - +1.0 43,535 - -0.7 43,537 + +0.8 43,583 + -0.4 43,584 - -0.5 43,615 + -0.1 43,616 - -0.2 43,628 + -1.8 43,628 + -0.4 43,628 + -0.5 43,628 + -0.3 43,628 + +0.3 43,628 + -1.7 43,628 + -0.7 43,628 + -0.2 43,628 + -0.3 43,628 + -0.1 43,628 + +0.2 43,628 + -0.5 43,628 + -0.2 43,629 - +0.5 43,629 - -0.2 43,629 - -1.2 43,629 - +0.1 43,629 - -1.3 43,629 - -0.3 43,629 - -0.7 43,857 + GFF41 0.26 -0.1 43,857 + GFF41 0.26 -0.6 43,857 + GFF41 0.26 -0.1 43,857 + GFF41 0.26 -0.4 43,858 - GFF41 0.26 +0.9 43,885 + GFF41 0.35 -0.6 43,897 + GFF41 0.38 -0.2 44,085 + -0.3 44,085 + +0.2 44,085 + +0.2 44,086 - -0.4 44,141 + -0.2 44,142 - +0.1 44,142 - +0.6 44,197 + -0.7 44,197 + -0.5 44,197 + +0.1 44,197 + -0.2 44,197 + -0.4 44,197 + -0.5 44,198 - -0.2 44,198 - -0.2 44,198 - -0.2 44,198 - -0.5 44,198 - +0.2 44,198 - -0.1 44,198 - -0.7 44,269 - GFF42 0.23 -0.7 44,508 - GFF42 0.77 -0.5 44,554 + GFF42 0.87 -1.0 44,554 + GFF42 0.87 +0.5 44,554 + GFF42 0.87 -0.2 44,554 + GFF42 0.87 -0.5 44,554 + GFF42 0.87 -1.2 44,555 - GFF42 0.87 -1.1 44,555 - GFF42 0.87 -0.2 44,555 - GFF42 0.87 -0.2 44,555 - GFF42 0.87 -0.5 44,555 - GFF42 0.87 -0.2 44,555 - GFF42 0.87 -0.3
Or see this region's nucleotide sequence