Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3977 and GFF3978 are separated by 1 nucleotides GFF3978 and GFF3979 are separated by 28 nucleotides
GFF3977 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 180,180 to 181,346
GFF3977
GFF3978 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 181,348 to 182,493
GFF3978
GFF3979 - 3-phenylpropionate dioxygenase alpha subunit (EC 1.14.1.-), at 182,522 to 183,847
GFF3979
Position (kb) 181
182
183 Strain fitness (log2 ratio) -2
-1
0
1
2 at 180.354 kb on + strand, within GFF3977 at 180.355 kb on - strand, within GFF3977 at 180.708 kb on + strand, within GFF3977 at 180.898 kb on - strand, within GFF3977 at 180.913 kb on - strand, within GFF3977 at 180.913 kb on - strand, within GFF3977 at 181.111 kb on - strand, within GFF3977 at 181.111 kb on - strand, within GFF3977 at 181.134 kb on + strand, within GFF3977 at 181.255 kb on - strand at 181.859 kb on + strand, within GFF3978 at 181.859 kb on + strand, within GFF3978 at 181.860 kb on - strand, within GFF3978 at 181.860 kb on - strand, within GFF3978 at 181.864 kb on + strand, within GFF3978 at 182.029 kb on + strand, within GFF3978 at 182.030 kb on - strand, within GFF3978 at 182.030 kb on - strand, within GFF3978 at 182.053 kb on + strand, within GFF3978 at 182.054 kb on - strand, within GFF3978 at 182.069 kb on - strand, within GFF3978 at 182.272 kb on + strand, within GFF3978 at 182.272 kb on + strand, within GFF3978 at 182.273 kb on - strand, within GFF3978 at 182.281 kb on + strand, within GFF3978 at 182.401 kb on + strand at 182.484 kb on - strand at 182.531 kb on + strand at 182.531 kb on + strand at 182.531 kb on + strand at 182.858 kb on + strand, within GFF3979 at 183.026 kb on + strand, within GFF3979 at 183.140 kb on + strand, within GFF3979 at 183.140 kb on + strand, within GFF3979 at 183.141 kb on - strand, within GFF3979 at 183.264 kb on + strand, within GFF3979 at 183.265 kb on - strand, within GFF3979 at 183.369 kb on - strand, within GFF3979 at 183.386 kb on + strand, within GFF3979 at 183.435 kb on + strand, within GFF3979 at 183.435 kb on + strand, within GFF3979
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 180,354 + GFF3977 0.15 +0.0 180,355 - GFF3977 0.15 -0.4 180,708 + GFF3977 0.45 -0.5 180,898 - GFF3977 0.62 -0.6 180,913 - GFF3977 0.63 -0.5 180,913 - GFF3977 0.63 -0.9 181,111 - GFF3977 0.80 +0.4 181,111 - GFF3977 0.80 +0.7 181,134 + GFF3977 0.82 -0.2 181,255 - -0.5 181,859 + GFF3978 0.45 +0.2 181,859 + GFF3978 0.45 +0.5 181,860 - GFF3978 0.45 -1.2 181,860 - GFF3978 0.45 -0.1 181,864 + GFF3978 0.45 +0.5 182,029 + GFF3978 0.59 -0.3 182,030 - GFF3978 0.60 -0.2 182,030 - GFF3978 0.60 +0.2 182,053 + GFF3978 0.62 +1.4 182,054 - GFF3978 0.62 +0.6 182,069 - GFF3978 0.63 -0.8 182,272 + GFF3978 0.81 +0.6 182,272 + GFF3978 0.81 -0.4 182,273 - GFF3978 0.81 +2.4 182,281 + GFF3978 0.81 +0.2 182,401 + -0.0 182,484 - -0.2 182,531 + +0.7 182,531 + -1.5 182,531 + -0.1 182,858 + GFF3979 0.25 -1.1 183,026 + GFF3979 0.38 -1.8 183,140 + GFF3979 0.47 -0.4 183,140 + GFF3979 0.47 -0.6 183,141 - GFF3979 0.47 -0.6 183,264 + GFF3979 0.56 +0.2 183,265 - GFF3979 0.56 +0.0 183,369 - GFF3979 0.64 +0.3 183,386 + GFF3979 0.65 +0.1 183,435 + GFF3979 0.69 +0.1 183,435 + GFF3979 0.69 +0.3
Or see this region's nucleotide sequence