Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3973 and GFF3974 overlap by 4 nucleotides GFF3974 and GFF3975 are separated by 16 nucleotides GFF3975 and GFF3976 overlap by 4 nucleotides
GFF3973 - FIG01198345: hypothetical protein, at 176,145 to 177,320
GFF3973
GFF3974 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 177,317 to 178,570
GFF3974
GFF3975 - Metal-dependent hydrolase, at 178,587 to 179,399
GFF3975
GFF3976 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 179,396 to 180,130
GFF3976
Position (kb) 177
178
179 Strain fitness (log2 ratio) -2
-1
0
1
2 at 176.565 kb on + strand, within GFF3973 at 176.566 kb on - strand, within GFF3973 at 176.613 kb on + strand, within GFF3973 at 176.613 kb on + strand, within GFF3973 at 176.614 kb on - strand, within GFF3973 at 176.614 kb on - strand, within GFF3973 at 176.614 kb on - strand, within GFF3973 at 176.626 kb on - strand, within GFF3973 at 176.730 kb on + strand, within GFF3973 at 176.731 kb on - strand, within GFF3973 at 176.731 kb on - strand, within GFF3973 at 176.947 kb on - strand, within GFF3973 at 176.994 kb on + strand, within GFF3973 at 176.994 kb on + strand, within GFF3973 at 176.994 kb on + strand, within GFF3973 at 176.995 kb on - strand, within GFF3973 at 177.270 kb on + strand at 177.270 kb on + strand at 177.271 kb on - strand at 177.333 kb on + strand at 177.333 kb on + strand at 177.334 kb on - strand at 178.145 kb on + strand, within GFF3974 at 178.145 kb on + strand, within GFF3974 at 178.146 kb on - strand, within GFF3974 at 178.146 kb on - strand, within GFF3974 at 178.485 kb on - strand at 178.968 kb on + strand, within GFF3975 at 178.968 kb on + strand, within GFF3975 at 179.212 kb on - strand, within GFF3975 at 179.212 kb on - strand, within GFF3975 at 179.230 kb on - strand, within GFF3975 at 179.241 kb on + strand, within GFF3975 at 179.241 kb on + strand, within GFF3975 at 179.242 kb on - strand, within GFF3975 at 179.242 kb on - strand, within GFF3975 at 179.242 kb on - strand, within GFF3975 at 179.244 kb on + strand, within GFF3975 at 179.244 kb on + strand, within GFF3975 at 179.245 kb on - strand, within GFF3975 at 179.245 kb on - strand, within GFF3975 at 179.245 kb on - strand, within GFF3975 at 179.245 kb on - strand, within GFF3975
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 176,565 + GFF3973 0.36 +1.1 176,566 - GFF3973 0.36 +0.3 176,613 + GFF3973 0.40 +0.5 176,613 + GFF3973 0.40 +2.2 176,614 - GFF3973 0.40 +1.7 176,614 - GFF3973 0.40 -0.0 176,614 - GFF3973 0.40 -1.6 176,626 - GFF3973 0.41 -0.2 176,730 + GFF3973 0.50 +0.0 176,731 - GFF3973 0.50 -0.1 176,731 - GFF3973 0.50 +0.1 176,947 - GFF3973 0.68 +0.3 176,994 + GFF3973 0.72 +0.5 176,994 + GFF3973 0.72 +0.0 176,994 + GFF3973 0.72 +0.4 176,995 - GFF3973 0.72 +0.2 177,270 + +0.3 177,270 + +2.5 177,271 - +1.2 177,333 + -0.4 177,333 + -0.0 177,334 - +0.1 178,145 + GFF3974 0.66 +0.4 178,145 + GFF3974 0.66 +0.2 178,146 - GFF3974 0.66 +1.3 178,146 - GFF3974 0.66 -0.1 178,485 - -1.0 178,968 + GFF3975 0.47 +0.7 178,968 + GFF3975 0.47 +0.2 179,212 - GFF3975 0.77 -0.0 179,212 - GFF3975 0.77 +0.6 179,230 - GFF3975 0.79 -0.4 179,241 + GFF3975 0.80 -1.8 179,241 + GFF3975 0.80 +0.5 179,242 - GFF3975 0.81 -0.1 179,242 - GFF3975 0.81 +0.6 179,242 - GFF3975 0.81 +0.2 179,244 + GFF3975 0.81 +1.8 179,244 + GFF3975 0.81 +0.2 179,245 - GFF3975 0.81 +0.5 179,245 - GFF3975 0.81 +2.2 179,245 - GFF3975 0.81 +0.8 179,245 - GFF3975 0.81 +0.8
Or see this region's nucleotide sequence