Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3956 and GFF3957 are separated by 6 nucleotides GFF3957 and GFF3958 are separated by 12 nucleotides GFF3958 and GFF3959 are separated by 30 nucleotides
GFF3956 - no description, at 156,887 to 157,930
GFF3956
GFF3957 - Ribosome small subunit biogenesis RbfA-release protein RsgA, at 157,937 to 158,896
GFF3957
GFF3958 - Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96), at 158,909 to 159,268
GFF3958
GFF3959 - Uncharacterized integral membrane endopeptidase Bmul_2226, at 159,299 to 160,558
GFF3959
Position (kb) 157
158
159 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 157.274 kb on + strand, within GFF3956 at 157.275 kb on - strand, within GFF3956 at 157.474 kb on - strand, within GFF3956 at 157.977 kb on + strand at 158.077 kb on - strand, within GFF3957 at 158.214 kb on + strand, within GFF3957 at 158.214 kb on + strand, within GFF3957 at 158.385 kb on + strand, within GFF3957 at 158.891 kb on - strand at 158.904 kb on + strand at 158.905 kb on - strand at 158.905 kb on - strand at 159.027 kb on + strand, within GFF3958 at 159.027 kb on + strand, within GFF3958 at 159.027 kb on + strand, within GFF3958 at 159.027 kb on + strand, within GFF3958 at 159.027 kb on + strand, within GFF3958 at 159.027 kb on + strand, within GFF3958 at 159.028 kb on - strand, within GFF3958 at 159.028 kb on - strand, within GFF3958 at 159.108 kb on + strand, within GFF3958 at 159.108 kb on + strand, within GFF3958 at 159.109 kb on - strand, within GFF3958 at 159.349 kb on - strand at 159.351 kb on + strand at 159.351 kb on + strand at 159.351 kb on + strand at 159.351 kb on + strand at 159.352 kb on - strand at 159.352 kb on - strand at 159.352 kb on - strand at 159.352 kb on - strand at 159.352 kb on - strand at 159.352 kb on - strand at 159.403 kb on - strand at 159.606 kb on + strand, within GFF3959 at 159.606 kb on + strand, within GFF3959 at 159.607 kb on - strand, within GFF3959 at 159.774 kb on + strand, within GFF3959 at 159.775 kb on - strand, within GFF3959 at 159.775 kb on - strand, within GFF3959 at 159.775 kb on - strand, within GFF3959 at 159.775 kb on - strand, within GFF3959 at 159.775 kb on - strand, within GFF3959 at 159.813 kb on + strand, within GFF3959 at 159.814 kb on - strand, within GFF3959 at 159.814 kb on - strand, within GFF3959 at 159.814 kb on - strand, within GFF3959 at 159.814 kb on - strand, within GFF3959 at 159.814 kb on - strand, within GFF3959
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 157,274 + GFF3956 0.37 -1.3 157,275 - GFF3956 0.37 -1.4 157,474 - GFF3956 0.56 -0.2 157,977 + +0.2 158,077 - GFF3957 0.15 -2.0 158,214 + GFF3957 0.29 -1.2 158,214 + GFF3957 0.29 -1.0 158,385 + GFF3957 0.47 -0.6 158,891 - -1.9 158,904 + +3.9 158,905 - +0.3 158,905 - -0.4 159,027 + GFF3958 0.33 +0.8 159,027 + GFF3958 0.33 -0.7 159,027 + GFF3958 0.33 +0.3 159,027 + GFF3958 0.33 -1.2 159,027 + GFF3958 0.33 -0.3 159,027 + GFF3958 0.33 -1.0 159,028 - GFF3958 0.33 -0.4 159,028 - GFF3958 0.33 +0.2 159,108 + GFF3958 0.55 -0.2 159,108 + GFF3958 0.55 -0.2 159,109 - GFF3958 0.56 -0.1 159,349 - +0.3 159,351 + -0.7 159,351 + +0.1 159,351 + -0.4 159,351 + +0.5 159,352 - +0.4 159,352 - +1.0 159,352 - -1.0 159,352 - -0.1 159,352 - +0.8 159,352 - -0.7 159,403 - -0.2 159,606 + GFF3959 0.24 +0.0 159,606 + GFF3959 0.24 -0.9 159,607 - GFF3959 0.24 +0.8 159,774 + GFF3959 0.38 -0.1 159,775 - GFF3959 0.38 +1.3 159,775 - GFF3959 0.38 +0.6 159,775 - GFF3959 0.38 +0.4 159,775 - GFF3959 0.38 -0.6 159,775 - GFF3959 0.38 +0.0 159,813 + GFF3959 0.41 +0.4 159,814 - GFF3959 0.41 -0.0 159,814 - GFF3959 0.41 -0.5 159,814 - GFF3959 0.41 -0.1 159,814 - GFF3959 0.41 -1.3 159,814 - GFF3959 0.41 -0.6
Or see this region's nucleotide sequence