Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3955 and GFF3956 overlap by 4 nucleotides GFF3956 and GFF3957 are separated by 6 nucleotides GFF3957 and GFF3958 are separated by 12 nucleotides
GFF3955 - Histidinol-phosphate aminotransferase (EC 2.6.1.9), at 155,796 to 156,890
GFF3955
GFF3956 - no description, at 156,887 to 157,930
GFF3956
GFF3957 - Ribosome small subunit biogenesis RbfA-release protein RsgA, at 157,937 to 158,896
GFF3957
GFF3958 - Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96), at 158,909 to 159,268
GFF3958
Position (kb) 156
157
158 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 155.976 kb on + strand, within GFF3955 at 155.976 kb on + strand, within GFF3955 at 155.976 kb on + strand, within GFF3955 at 156.138 kb on + strand, within GFF3955 at 156.138 kb on + strand, within GFF3955 at 156.138 kb on + strand, within GFF3955 at 156.138 kb on + strand, within GFF3955 at 156.139 kb on - strand, within GFF3955 at 156.139 kb on - strand, within GFF3955 at 156.139 kb on - strand, within GFF3955 at 156.139 kb on - strand, within GFF3955 at 156.139 kb on - strand, within GFF3955 at 156.147 kb on + strand, within GFF3955 at 156.147 kb on + strand, within GFF3955 at 156.147 kb on + strand, within GFF3955 at 156.147 kb on + strand, within GFF3955 at 156.147 kb on + strand, within GFF3955 at 156.148 kb on - strand, within GFF3955 at 156.148 kb on - strand, within GFF3955 at 156.148 kb on - strand, within GFF3955 at 156.148 kb on - strand, within GFF3955 at 156.148 kb on - strand, within GFF3955 at 156.157 kb on - strand, within GFF3955 at 156.168 kb on + strand, within GFF3955 at 156.168 kb on + strand, within GFF3955 at 156.168 kb on + strand, within GFF3955 at 156.168 kb on + strand, within GFF3955 at 156.169 kb on - strand, within GFF3955 at 156.169 kb on - strand, within GFF3955 at 156.169 kb on - strand, within GFF3955 at 156.369 kb on + strand, within GFF3955 at 156.369 kb on + strand, within GFF3955 at 156.369 kb on + strand, within GFF3955 at 156.370 kb on - strand, within GFF3955 at 156.370 kb on - strand, within GFF3955 at 156.370 kb on - strand, within GFF3955 at 156.370 kb on - strand, within GFF3955 at 156.370 kb on - strand, within GFF3955 at 156.370 kb on - strand, within GFF3955 at 156.414 kb on + strand, within GFF3955 at 156.550 kb on + strand, within GFF3955 at 156.795 kb on - strand at 156.804 kb on + strand at 156.805 kb on - strand at 156.805 kb on - strand at 157.274 kb on + strand, within GFF3956 at 157.275 kb on - strand, within GFF3956 at 157.474 kb on - strand, within GFF3956 at 157.977 kb on + strand at 158.077 kb on - strand, within GFF3957 at 158.214 kb on + strand, within GFF3957 at 158.214 kb on + strand, within GFF3957 at 158.385 kb on + strand, within GFF3957 at 158.891 kb on - strand at 158.904 kb on + strand at 158.905 kb on - strand at 158.905 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 155,976 + GFF3955 0.16 -1.0 155,976 + GFF3955 0.16 -0.1 155,976 + GFF3955 0.16 +0.2 156,138 + GFF3955 0.31 +0.7 156,138 + GFF3955 0.31 -0.3 156,138 + GFF3955 0.31 -0.1 156,138 + GFF3955 0.31 -0.9 156,139 - GFF3955 0.31 -1.1 156,139 - GFF3955 0.31 -0.7 156,139 - GFF3955 0.31 -0.8 156,139 - GFF3955 0.31 +0.0 156,139 - GFF3955 0.31 +0.6 156,147 + GFF3955 0.32 +0.0 156,147 + GFF3955 0.32 -0.6 156,147 + GFF3955 0.32 -0.7 156,147 + GFF3955 0.32 -0.2 156,147 + GFF3955 0.32 -0.2 156,148 - GFF3955 0.32 +0.5 156,148 - GFF3955 0.32 -2.2 156,148 - GFF3955 0.32 +0.1 156,148 - GFF3955 0.32 -0.4 156,148 - GFF3955 0.32 +0.4 156,157 - GFF3955 0.33 -0.1 156,168 + GFF3955 0.34 -1.4 156,168 + GFF3955 0.34 +1.2 156,168 + GFF3955 0.34 -0.6 156,168 + GFF3955 0.34 -0.9 156,169 - GFF3955 0.34 -0.5 156,169 - GFF3955 0.34 +1.8 156,169 - GFF3955 0.34 -0.2 156,369 + GFF3955 0.52 +1.3 156,369 + GFF3955 0.52 -0.3 156,369 + GFF3955 0.52 -1.0 156,370 - GFF3955 0.52 -0.5 156,370 - GFF3955 0.52 +0.2 156,370 - GFF3955 0.52 -1.5 156,370 - GFF3955 0.52 -1.1 156,370 - GFF3955 0.52 -0.7 156,370 - GFF3955 0.52 +0.2 156,414 + GFF3955 0.56 -1.3 156,550 + GFF3955 0.69 -0.7 156,795 - +0.6 156,804 + +1.2 156,805 - -0.4 156,805 - +0.2 157,274 + GFF3956 0.37 -1.3 157,275 - GFF3956 0.37 -1.4 157,474 - GFF3956 0.56 -0.2 157,977 + +0.2 158,077 - GFF3957 0.15 -2.0 158,214 + GFF3957 0.29 -1.2 158,214 + GFF3957 0.29 -1.0 158,385 + GFF3957 0.47 -0.6 158,891 - -1.9 158,904 + +3.9 158,905 - +0.3 158,905 - -0.4
Or see this region's nucleotide sequence