Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3946 and GFF3947 are separated by 19 nucleotides GFF3947 and GFF3948 are separated by 7 nucleotides GFF3948 and GFF3949 are separated by 180 nucleotides GFF3949 and GFF3950 are separated by 16 nucleotides
GFF3946 - Probable low-affinity inorganic phosphate transporter, at 149,552 to 150,562
GFF3946
GFF3947 - Putative transmembrane protein, at 150,582 to 151,028
GFF3947
GFF3948 - Acetyltransferase, GNAT family, at 151,036 to 151,560
GFF3948
GFF3949 - SSU ribosomal protein S16p, at 151,741 to 152,004
GFF3949
GFF3950 - 16S rRNA processing protein RimM, at 152,021 to 152,575
GFF3950
Position (kb) 151
152 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 150.110 kb on + strand, within GFF3946 at 150.110 kb on + strand, within GFF3946 at 150.110 kb on + strand, within GFF3946 at 150.110 kb on + strand, within GFF3946 at 150.111 kb on - strand, within GFF3946 at 150.111 kb on - strand, within GFF3946 at 150.111 kb on - strand, within GFF3946 at 150.111 kb on - strand, within GFF3946 at 150.185 kb on + strand, within GFF3946 at 150.185 kb on + strand, within GFF3946 at 150.186 kb on - strand, within GFF3946 at 150.186 kb on - strand, within GFF3946 at 150.186 kb on - strand, within GFF3946 at 150.236 kb on + strand, within GFF3946 at 150.409 kb on + strand, within GFF3946 at 150.536 kb on + strand at 150.536 kb on + strand at 150.536 kb on + strand at 150.537 kb on - strand at 150.625 kb on + strand at 150.874 kb on + strand, within GFF3947 at 150.874 kb on + strand, within GFF3947 at 150.874 kb on + strand, within GFF3947 at 150.874 kb on + strand, within GFF3947 at 150.874 kb on + strand, within GFF3947 at 150.875 kb on - strand, within GFF3947 at 150.875 kb on - strand, within GFF3947 at 150.875 kb on - strand, within GFF3947 at 150.875 kb on - strand, within GFF3947 at 150.875 kb on - strand, within GFF3947 at 150.875 kb on - strand, within GFF3947 at 150.898 kb on + strand, within GFF3947 at 150.898 kb on + strand, within GFF3947 at 150.899 kb on - strand, within GFF3947 at 150.899 kb on - strand, within GFF3947 at 150.899 kb on - strand, within GFF3947 at 150.961 kb on + strand, within GFF3947 at 150.961 kb on + strand, within GFF3947 at 150.962 kb on - strand, within GFF3947 at 150.962 kb on - strand, within GFF3947 at 150.962 kb on - strand, within GFF3947 at 150.962 kb on - strand, within GFF3947 at 150.962 kb on - strand, within GFF3947 at 151.083 kb on - strand at 151.084 kb on + strand at 151.084 kb on + strand at 151.084 kb on + strand at 151.084 kb on + strand at 151.084 kb on + strand at 151.085 kb on - strand at 151.085 kb on - strand at 151.085 kb on - strand at 151.085 kb on - strand at 151.085 kb on - strand at 151.085 kb on - strand at 151.085 kb on - strand at 151.085 kb on - strand at 151.298 kb on + strand, within GFF3948 at 151.298 kb on + strand, within GFF3948 at 151.298 kb on + strand, within GFF3948 at 151.298 kb on + strand, within GFF3948 at 151.298 kb on + strand, within GFF3948 at 151.298 kb on + strand, within GFF3948 at 151.298 kb on + strand, within GFF3948 at 151.298 kb on + strand, within GFF3948 at 151.298 kb on + strand, within GFF3948 at 151.298 kb on + strand, within GFF3948 at 151.298 kb on + strand, within GFF3948 at 151.298 kb on + strand, within GFF3948 at 151.298 kb on + strand, within GFF3948 at 151.298 kb on + strand, within GFF3948 at 151.298 kb on + strand, within GFF3948 at 151.298 kb on + strand, within GFF3948 at 151.298 kb on + strand, within GFF3948 at 151.298 kb on + strand, within GFF3948 at 151.298 kb on + strand, within GFF3948 at 151.299 kb on - strand, within GFF3948 at 151.299 kb on - strand, within GFF3948 at 151.299 kb on - strand, within GFF3948 at 151.299 kb on - strand, within GFF3948 at 151.299 kb on - strand, within GFF3948 at 151.299 kb on - strand, within GFF3948 at 151.299 kb on - strand, within GFF3948 at 151.299 kb on - strand, within GFF3948 at 151.299 kb on - strand, within GFF3948 at 151.299 kb on - strand, within GFF3948 at 151.299 kb on - strand, within GFF3948 at 151.299 kb on - strand, within GFF3948 at 151.299 kb on - strand, within GFF3948 at 151.299 kb on - strand, within GFF3948 at 151.299 kb on - strand, within GFF3948 at 151.299 kb on - strand, within GFF3948 at 151.325 kb on + strand, within GFF3948 at 151.326 kb on - strand, within GFF3948 at 151.397 kb on + strand, within GFF3948 at 151.397 kb on + strand, within GFF3948 at 151.397 kb on + strand, within GFF3948 at 151.398 kb on - strand, within GFF3948 at 151.398 kb on - strand, within GFF3948 at 151.502 kb on + strand, within GFF3948 at 151.502 kb on + strand, within GFF3948 at 151.502 kb on + strand, within GFF3948 at 151.502 kb on + strand, within GFF3948 at 151.502 kb on + strand, within GFF3948 at 151.502 kb on + strand, within GFF3948 at 151.502 kb on + strand, within GFF3948 at 151.502 kb on + strand, within GFF3948 at 151.503 kb on - strand, within GFF3948 at 151.503 kb on - strand, within GFF3948 at 151.503 kb on - strand, within GFF3948 at 151.503 kb on - strand, within GFF3948 at 151.503 kb on - strand, within GFF3948 at 151.503 kb on - strand, within GFF3948 at 151.503 kb on - strand, within GFF3948 at 151.503 kb on - strand, within GFF3948 at 151.503 kb on - strand, within GFF3948 at 151.503 kb on - strand, within GFF3948 at 151.503 kb on - strand, within GFF3948 at 151.503 kb on - strand, within GFF3948 at 151.615 kb on + strand at 151.615 kb on + strand at 151.615 kb on + strand at 151.615 kb on + strand at 151.616 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 150,110 + GFF3946 0.55 -2.2 150,110 + GFF3946 0.55 +0.6 150,110 + GFF3946 0.55 -0.5 150,110 + GFF3946 0.55 -0.5 150,111 - GFF3946 0.55 -0.2 150,111 - GFF3946 0.55 -1.3 150,111 - GFF3946 0.55 -1.0 150,111 - GFF3946 0.55 -1.1 150,185 + GFF3946 0.63 -0.5 150,185 + GFF3946 0.63 +0.2 150,186 - GFF3946 0.63 -1.6 150,186 - GFF3946 0.63 -0.1 150,186 - GFF3946 0.63 -0.4 150,236 + GFF3946 0.68 +0.8 150,409 + GFF3946 0.85 -1.0 150,536 + +1.2 150,536 + +0.2 150,536 + -1.2 150,537 - -0.6 150,625 + +0.0 150,874 + GFF3947 0.65 -0.2 150,874 + GFF3947 0.65 -0.7 150,874 + GFF3947 0.65 -0.2 150,874 + GFF3947 0.65 -0.8 150,874 + GFF3947 0.65 -1.4 150,875 - GFF3947 0.66 +0.8 150,875 - GFF3947 0.66 +0.4 150,875 - GFF3947 0.66 -0.6 150,875 - GFF3947 0.66 -0.1 150,875 - GFF3947 0.66 -0.7 150,875 - GFF3947 0.66 -1.0 150,898 + GFF3947 0.71 -0.2 150,898 + GFF3947 0.71 +0.8 150,899 - GFF3947 0.71 -1.2 150,899 - GFF3947 0.71 -1.1 150,899 - GFF3947 0.71 -0.5 150,961 + GFF3947 0.85 -0.3 150,961 + GFF3947 0.85 -1.6 150,962 - GFF3947 0.85 -0.2 150,962 - GFF3947 0.85 -0.5 150,962 - GFF3947 0.85 -2.5 150,962 - GFF3947 0.85 -0.5 150,962 - GFF3947 0.85 -0.2 151,083 - -1.9 151,084 + +1.5 151,084 + -0.8 151,084 + -0.5 151,084 + +0.1 151,084 + -0.1 151,085 - -1.3 151,085 - -0.4 151,085 - -1.1 151,085 - -0.4 151,085 - +0.9 151,085 - -0.2 151,085 - -0.6 151,085 - +0.8 151,298 + GFF3948 0.50 +2.8 151,298 + GFF3948 0.50 +0.0 151,298 + GFF3948 0.50 +0.4 151,298 + GFF3948 0.50 +1.2 151,298 + GFF3948 0.50 -0.5 151,298 + GFF3948 0.50 -0.3 151,298 + GFF3948 0.50 +0.2 151,298 + GFF3948 0.50 +1.5 151,298 + GFF3948 0.50 +0.0 151,298 + GFF3948 0.50 -0.3 151,298 + GFF3948 0.50 +0.8 151,298 + GFF3948 0.50 -0.4 151,298 + GFF3948 0.50 -0.1 151,298 + GFF3948 0.50 -1.5 151,298 + GFF3948 0.50 -1.4 151,298 + GFF3948 0.50 +0.1 151,298 + GFF3948 0.50 -0.2 151,298 + GFF3948 0.50 +0.8 151,298 + GFF3948 0.50 -1.1 151,299 - GFF3948 0.50 -0.2 151,299 - GFF3948 0.50 -1.4 151,299 - GFF3948 0.50 +2.0 151,299 - GFF3948 0.50 -0.1 151,299 - GFF3948 0.50 -0.7 151,299 - GFF3948 0.50 -1.2 151,299 - GFF3948 0.50 -1.0 151,299 - GFF3948 0.50 +0.4 151,299 - GFF3948 0.50 -0.3 151,299 - GFF3948 0.50 -0.2 151,299 - GFF3948 0.50 -0.6 151,299 - GFF3948 0.50 +0.1 151,299 - GFF3948 0.50 +1.2 151,299 - GFF3948 0.50 +0.2 151,299 - GFF3948 0.50 +0.2 151,299 - GFF3948 0.50 -0.4 151,325 + GFF3948 0.55 -0.2 151,326 - GFF3948 0.55 -1.6 151,397 + GFF3948 0.69 -0.4 151,397 + GFF3948 0.69 -0.5 151,397 + GFF3948 0.69 -0.5 151,398 - GFF3948 0.69 +0.6 151,398 - GFF3948 0.69 -0.6 151,502 + GFF3948 0.89 -0.2 151,502 + GFF3948 0.89 -0.3 151,502 + GFF3948 0.89 -0.1 151,502 + GFF3948 0.89 -0.6 151,502 + GFF3948 0.89 +0.0 151,502 + GFF3948 0.89 +0.1 151,502 + GFF3948 0.89 -0.3 151,502 + GFF3948 0.89 -0.1 151,503 - GFF3948 0.89 -0.8 151,503 - GFF3948 0.89 -0.5 151,503 - GFF3948 0.89 +0.5 151,503 - GFF3948 0.89 +0.1 151,503 - GFF3948 0.89 +1.0 151,503 - GFF3948 0.89 -0.9 151,503 - GFF3948 0.89 -1.2 151,503 - GFF3948 0.89 +0.7 151,503 - GFF3948 0.89 +0.0 151,503 - GFF3948 0.89 -0.5 151,503 - GFF3948 0.89 -0.3 151,503 - GFF3948 0.89 +0.0 151,615 + +1.8 151,615 + -0.3 151,615 + -0.0 151,615 + -1.5 151,616 - -1.0
Or see this region's nucleotide sequence