Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3923 and GFF3924 are separated by 77 nucleotides GFF3924 and GFF3925 overlap by 4 nucleotides GFF3925 and GFF3926 are separated by 28 nucleotides GFF3926 and GFF3927 overlap by 4 nucleotides
GFF3923 - Kynurenine formamidase, bacterial (EC 3.5.1.9), at 129,375 to 130,025
GFF3923
GFF3924 - Ferredoxin, at 130,103 to 130,417
GFF3924
GFF3925 - hypothetical protein, at 130,414 to 130,971
GFF3925
GFF3926 - Ornithine carbamoyltransferase (EC 2.1.3.3), at 131,000 to 131,962
GFF3926
GFF3927 - N-acetylornithine aminotransferase (EC 2.6.1.11), at 131,959 to 133,167
GFF3927
Position (kb) 130
131 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 129.457 kb on + strand, within GFF3923 at 129.457 kb on + strand, within GFF3923 at 129.676 kb on + strand, within GFF3923 at 129.676 kb on + strand, within GFF3923 at 129.676 kb on + strand, within GFF3923 at 129.676 kb on + strand, within GFF3923 at 129.676 kb on + strand, within GFF3923 at 129.676 kb on + strand, within GFF3923 at 129.676 kb on + strand, within GFF3923 at 129.676 kb on + strand, within GFF3923 at 129.676 kb on + strand, within GFF3923 at 129.676 kb on + strand, within GFF3923 at 129.676 kb on + strand, within GFF3923 at 129.677 kb on - strand, within GFF3923 at 129.677 kb on - strand, within GFF3923 at 129.677 kb on - strand, within GFF3923 at 129.677 kb on - strand, within GFF3923 at 129.677 kb on - strand, within GFF3923 at 129.677 kb on - strand, within GFF3923 at 129.677 kb on - strand, within GFF3923 at 129.677 kb on - strand, within GFF3923 at 129.680 kb on + strand, within GFF3923 at 129.680 kb on + strand, within GFF3923 at 129.680 kb on + strand, within GFF3923 at 129.680 kb on + strand, within GFF3923 at 129.680 kb on + strand, within GFF3923 at 129.680 kb on + strand, within GFF3923 at 129.680 kb on + strand, within GFF3923 at 129.681 kb on - strand, within GFF3923 at 129.681 kb on - strand, within GFF3923 at 129.681 kb on - strand, within GFF3923 at 129.835 kb on + strand, within GFF3923 at 129.836 kb on - strand, within GFF3923 at 129.836 kb on - strand, within GFF3923 at 129.836 kb on - strand, within GFF3923 at 129.836 kb on - strand, within GFF3923 at 129.836 kb on - strand, within GFF3923 at 129.940 kb on + strand, within GFF3923 at 129.941 kb on - strand, within GFF3923 at 129.941 kb on - strand, within GFF3923 at 130.206 kb on + strand, within GFF3924 at 130.206 kb on + strand, within GFF3924 at 130.206 kb on + strand, within GFF3924 at 130.206 kb on + strand, within GFF3924 at 130.206 kb on + strand, within GFF3924 at 130.206 kb on + strand, within GFF3924 at 130.206 kb on + strand, within GFF3924 at 130.206 kb on + strand, within GFF3924 at 130.207 kb on - strand, within GFF3924 at 130.207 kb on - strand, within GFF3924 at 130.207 kb on - strand, within GFF3924 at 130.207 kb on - strand, within GFF3924 at 130.207 kb on - strand, within GFF3924 at 130.207 kb on - strand, within GFF3924 at 130.207 kb on - strand, within GFF3924 at 130.207 kb on - strand, within GFF3924 at 130.207 kb on - strand, within GFF3924 at 130.207 kb on - strand, within GFF3924 at 130.207 kb on - strand, within GFF3924 at 130.207 kb on - strand, within GFF3924 at 130.378 kb on - strand, within GFF3924 at 130.378 kb on - strand, within GFF3924 at 130.500 kb on - strand, within GFF3925 at 130.500 kb on - strand, within GFF3925 at 130.500 kb on - strand, within GFF3925 at 130.671 kb on - strand, within GFF3925
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 129,457 + GFF3923 0.13 +0.1 129,457 + GFF3923 0.13 +0.1 129,676 + GFF3923 0.46 +0.1 129,676 + GFF3923 0.46 +0.4 129,676 + GFF3923 0.46 -1.1 129,676 + GFF3923 0.46 -0.2 129,676 + GFF3923 0.46 -1.3 129,676 + GFF3923 0.46 -0.2 129,676 + GFF3923 0.46 -0.5 129,676 + GFF3923 0.46 -0.5 129,676 + GFF3923 0.46 -1.1 129,676 + GFF3923 0.46 +2.6 129,676 + GFF3923 0.46 -1.4 129,677 - GFF3923 0.46 -0.7 129,677 - GFF3923 0.46 +1.8 129,677 - GFF3923 0.46 +0.4 129,677 - GFF3923 0.46 -0.3 129,677 - GFF3923 0.46 -0.8 129,677 - GFF3923 0.46 -0.2 129,677 - GFF3923 0.46 -0.3 129,677 - GFF3923 0.46 -0.6 129,680 + GFF3923 0.47 -0.6 129,680 + GFF3923 0.47 -0.9 129,680 + GFF3923 0.47 -0.4 129,680 + GFF3923 0.47 +3.9 129,680 + GFF3923 0.47 -0.1 129,680 + GFF3923 0.47 +1.5 129,680 + GFF3923 0.47 -0.6 129,681 - GFF3923 0.47 +0.4 129,681 - GFF3923 0.47 -0.9 129,681 - GFF3923 0.47 +1.5 129,835 + GFF3923 0.71 -0.6 129,836 - GFF3923 0.71 -0.5 129,836 - GFF3923 0.71 -0.1 129,836 - GFF3923 0.71 +0.1 129,836 - GFF3923 0.71 -0.3 129,836 - GFF3923 0.71 +0.8 129,940 + GFF3923 0.87 -0.8 129,941 - GFF3923 0.87 +3.9 129,941 - GFF3923 0.87 +0.6 130,206 + GFF3924 0.33 -0.8 130,206 + GFF3924 0.33 -0.2 130,206 + GFF3924 0.33 +0.8 130,206 + GFF3924 0.33 -0.2 130,206 + GFF3924 0.33 -0.7 130,206 + GFF3924 0.33 -0.6 130,206 + GFF3924 0.33 +0.8 130,206 + GFF3924 0.33 -0.2 130,207 - GFF3924 0.33 +0.2 130,207 - GFF3924 0.33 +0.4 130,207 - GFF3924 0.33 +0.3 130,207 - GFF3924 0.33 -0.7 130,207 - GFF3924 0.33 +0.2 130,207 - GFF3924 0.33 -1.6 130,207 - GFF3924 0.33 +0.2 130,207 - GFF3924 0.33 -0.8 130,207 - GFF3924 0.33 -0.2 130,207 - GFF3924 0.33 -0.3 130,207 - GFF3924 0.33 +0.2 130,207 - GFF3924 0.33 -1.8 130,378 - GFF3924 0.87 +0.8 130,378 - GFF3924 0.87 +0.2 130,500 - GFF3925 0.15 -0.9 130,500 - GFF3925 0.15 -0.2 130,500 - GFF3925 0.15 -0.4 130,671 - GFF3925 0.46 -0.8
Or see this region's nucleotide sequence