Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3878 and GFF3879 are separated by 151 nucleotides GFF3879 and GFF3880 are separated by 49 nucleotides GFF3880 and GFF3881 are separated by 69 nucleotides
GFF3878 - Lysyl-tRNA synthetase (class II) (EC 6.1.1.6), at 75,129 to 76,676
GFF3878
GFF3879 - Uncharacterized protein, similar to the N-terminal domain of Lon protease, at 76,828 to 77,472
GFF3879
GFF3880 - Cell division integral membrane protein, YggT and half-length relatives, at 77,522 to 78,082
GFF3880
GFF3881 - Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2), at 78,152 to 79,024
GFF3881
Position (kb) 76
77
78 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 76.724 kb on + strand at 76.724 kb on + strand at 76.724 kb on + strand at 76.830 kb on - strand at 76.982 kb on + strand, within GFF3879 at 77.067 kb on + strand, within GFF3879 at 77.067 kb on + strand, within GFF3879 at 77.068 kb on - strand, within GFF3879 at 77.163 kb on + strand, within GFF3879 at 77.372 kb on + strand, within GFF3879 at 77.492 kb on - strand at 77.492 kb on - strand at 77.492 kb on - strand at 77.492 kb on - strand at 77.492 kb on - strand at 77.528 kb on + strand at 77.528 kb on + strand at 77.528 kb on + strand at 77.529 kb on - strand at 77.529 kb on - strand at 77.529 kb on - strand at 77.597 kb on + strand, within GFF3880 at 77.597 kb on + strand, within GFF3880 at 77.597 kb on + strand, within GFF3880 at 77.597 kb on + strand, within GFF3880 at 77.597 kb on + strand, within GFF3880 at 77.597 kb on + strand, within GFF3880 at 77.597 kb on + strand, within GFF3880 at 77.597 kb on + strand, within GFF3880 at 77.597 kb on + strand, within GFF3880 at 77.598 kb on - strand, within GFF3880 at 77.598 kb on - strand, within GFF3880 at 77.598 kb on - strand, within GFF3880 at 77.598 kb on - strand, within GFF3880 at 77.598 kb on - strand, within GFF3880 at 77.598 kb on - strand, within GFF3880 at 77.598 kb on - strand, within GFF3880 at 77.598 kb on - strand, within GFF3880 at 77.598 kb on - strand, within GFF3880 at 77.598 kb on - strand, within GFF3880 at 77.606 kb on + strand, within GFF3880 at 77.606 kb on + strand, within GFF3880 at 77.607 kb on - strand, within GFF3880 at 77.607 kb on - strand, within GFF3880 at 77.607 kb on - strand, within GFF3880 at 77.607 kb on - strand, within GFF3880 at 77.607 kb on - strand, within GFF3880 at 77.607 kb on - strand, within GFF3880 at 77.873 kb on + strand, within GFF3880 at 77.873 kb on + strand, within GFF3880 at 77.873 kb on + strand, within GFF3880 at 77.873 kb on + strand, within GFF3880 at 77.873 kb on + strand, within GFF3880 at 77.873 kb on + strand, within GFF3880 at 77.873 kb on + strand, within GFF3880 at 77.873 kb on + strand, within GFF3880 at 77.873 kb on + strand, within GFF3880 at 77.874 kb on - strand, within GFF3880 at 77.874 kb on - strand, within GFF3880 at 77.874 kb on - strand, within GFF3880 at 77.874 kb on - strand, within GFF3880 at 77.874 kb on - strand, within GFF3880 at 77.874 kb on - strand, within GFF3880 at 77.874 kb on - strand, within GFF3880 at 77.874 kb on - strand, within GFF3880 at 77.874 kb on - strand, within GFF3880 at 78.060 kb on + strand at 78.061 kb on - strand at 78.065 kb on + strand at 78.065 kb on + strand at 78.065 kb on + strand at 78.065 kb on + strand at 78.065 kb on + strand at 78.066 kb on - strand at 78.066 kb on - strand at 78.066 kb on - strand at 78.066 kb on - strand at 78.066 kb on - strand at 78.066 kb on - strand at 78.066 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 76,724 + -0.6 76,724 + -0.2 76,724 + -3.1 76,830 - -0.8 76,982 + GFF3879 0.24 -1.0 77,067 + GFF3879 0.37 -1.5 77,067 + GFF3879 0.37 -0.6 77,068 - GFF3879 0.37 -1.3 77,163 + GFF3879 0.52 -0.2 77,372 + GFF3879 0.84 -0.8 77,492 - +3.3 77,492 - +2.8 77,492 - +3.0 77,492 - +3.5 77,492 - +1.4 77,528 + +0.2 77,528 + -0.3 77,528 + -0.9 77,529 - +0.8 77,529 - -1.0 77,529 - +0.8 77,597 + GFF3880 0.13 -1.1 77,597 + GFF3880 0.13 -0.7 77,597 + GFF3880 0.13 -0.3 77,597 + GFF3880 0.13 -0.7 77,597 + GFF3880 0.13 -1.8 77,597 + GFF3880 0.13 +0.8 77,597 + GFF3880 0.13 +0.5 77,597 + GFF3880 0.13 -0.3 77,597 + GFF3880 0.13 -0.4 77,598 - GFF3880 0.14 -0.9 77,598 - GFF3880 0.14 -0.0 77,598 - GFF3880 0.14 -0.8 77,598 - GFF3880 0.14 -1.2 77,598 - GFF3880 0.14 +2.8 77,598 - GFF3880 0.14 -0.5 77,598 - GFF3880 0.14 -0.6 77,598 - GFF3880 0.14 -1.4 77,598 - GFF3880 0.14 +0.0 77,598 - GFF3880 0.14 -0.4 77,606 + GFF3880 0.15 -0.2 77,606 + GFF3880 0.15 +0.8 77,607 - GFF3880 0.15 +1.8 77,607 - GFF3880 0.15 +0.8 77,607 - GFF3880 0.15 -0.2 77,607 - GFF3880 0.15 -0.8 77,607 - GFF3880 0.15 -0.7 77,607 - GFF3880 0.15 -0.8 77,873 + GFF3880 0.63 +1.4 77,873 + GFF3880 0.63 -1.2 77,873 + GFF3880 0.63 -0.3 77,873 + GFF3880 0.63 +0.1 77,873 + GFF3880 0.63 -0.5 77,873 + GFF3880 0.63 -0.1 77,873 + GFF3880 0.63 -0.3 77,873 + GFF3880 0.63 -0.5 77,873 + GFF3880 0.63 -0.3 77,874 - GFF3880 0.63 -0.5 77,874 - GFF3880 0.63 -0.5 77,874 - GFF3880 0.63 +0.1 77,874 - GFF3880 0.63 -0.8 77,874 - GFF3880 0.63 +0.2 77,874 - GFF3880 0.63 +0.8 77,874 - GFF3880 0.63 +0.2 77,874 - GFF3880 0.63 -0.8 77,874 - GFF3880 0.63 -1.7 78,060 + -0.9 78,061 - -1.8 78,065 + +0.2 78,065 + -1.5 78,065 + -0.4 78,065 + -0.7 78,065 + -1.1 78,066 - -0.3 78,066 - -0.0 78,066 - +0.8 78,066 - +0.3 78,066 - +0.6 78,066 - -1.1 78,066 - +1.1
Or see this region's nucleotide sequence