Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3852 and GFF3853 overlap by 4 nucleotides GFF3853 and GFF3854 are separated by 82 nucleotides GFF3854 and GFF3855 are separated by 146 nucleotides GFF3855 and GFF3856 are separated by 61 nucleotides
GFF3852 - Tetrapyrrole methylase family protein, at 52,277 to 53,038
GFF3852
GFF3853 - Septum formation protein Maf, at 53,035 to 53,616
GFF3853
GFF3854 - FIG01269488: protein, clustered with ribosomal protein L32p, at 53,699 to 54,268
GFF3854
GFF3855 - LSU ribosomal protein L32p @ LSU ribosomal protein L32p, zinc-independent, at 54,415 to 54,597
GFF3855
GFF3856 - Phosphate:acyl-ACP acyltransferase PlsX (EC 2.3.1.n2), at 54,659 to 55,756
GFF3856
Position (kb) 53
54
55 Strain fitness (log2 ratio) -2
-1
0
1 at 52.817 kb on + strand, within GFF3852 at 52.817 kb on + strand, within GFF3852 at 52.818 kb on - strand, within GFF3852 at 52.818 kb on - strand, within GFF3852 at 52.818 kb on - strand, within GFF3852 at 52.884 kb on + strand, within GFF3852 at 52.884 kb on + strand, within GFF3852 at 52.884 kb on + strand, within GFF3852 at 52.884 kb on + strand, within GFF3852 at 52.884 kb on + strand, within GFF3852 at 52.885 kb on - strand, within GFF3852 at 52.885 kb on - strand, within GFF3852 at 53.019 kb on + strand at 53.019 kb on + strand at 53.019 kb on + strand at 53.019 kb on + strand at 53.019 kb on + strand at 53.019 kb on + strand at 53.020 kb on - strand at 53.020 kb on - strand at 53.020 kb on - strand at 53.020 kb on - strand at 53.020 kb on - strand at 53.020 kb on - strand at 53.686 kb on + strand at 53.686 kb on + strand at 53.686 kb on + strand at 53.789 kb on + strand, within GFF3854 at 53.789 kb on + strand, within GFF3854 at 53.789 kb on + strand, within GFF3854 at 53.789 kb on + strand, within GFF3854 at 53.790 kb on - strand, within GFF3854 at 54.266 kb on + strand at 54.266 kb on + strand at 54.267 kb on - strand at 54.289 kb on + strand at 54.289 kb on + strand at 54.290 kb on - strand at 54.627 kb on + strand at 54.627 kb on + strand at 54.627 kb on + strand at 54.627 kb on + strand at 54.627 kb on + strand at 54.627 kb on + strand at 54.627 kb on + strand at 54.627 kb on + strand at 54.628 kb on - strand at 54.628 kb on - strand at 54.628 kb on - strand at 54.628 kb on - strand at 54.628 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 52,817 + GFF3852 0.71 -0.9 52,817 + GFF3852 0.71 -0.2 52,818 - GFF3852 0.71 -0.2 52,818 - GFF3852 0.71 -1.7 52,818 - GFF3852 0.71 -0.4 52,884 + GFF3852 0.80 -0.8 52,884 + GFF3852 0.80 -0.3 52,884 + GFF3852 0.80 +0.2 52,884 + GFF3852 0.80 -0.3 52,884 + GFF3852 0.80 +0.4 52,885 - GFF3852 0.80 -0.6 52,885 - GFF3852 0.80 +0.4 53,019 + -0.3 53,019 + -0.2 53,019 + -1.2 53,019 + -1.0 53,019 + +0.1 53,019 + -1.1 53,020 - -0.6 53,020 - -0.4 53,020 - -1.0 53,020 - -1.1 53,020 - -0.8 53,020 - -0.4 53,686 + +0.2 53,686 + -0.8 53,686 + -0.5 53,789 + GFF3854 0.16 -0.5 53,789 + GFF3854 0.16 +0.2 53,789 + GFF3854 0.16 -1.1 53,789 + GFF3854 0.16 +1.0 53,790 - GFF3854 0.16 -2.1 54,266 + -2.2 54,266 + -0.5 54,267 - +0.5 54,289 + -0.3 54,289 + +0.2 54,290 - -1.0 54,627 + -2.3 54,627 + -0.3 54,627 + +0.5 54,627 + -0.8 54,627 + -0.8 54,627 + -0.1 54,627 + -0.2 54,627 + -0.3 54,628 - -1.6 54,628 - -0.7 54,628 - -0.4 54,628 - -0.2 54,628 - -0.5
Or see this region's nucleotide sequence