Strain Fitness in Variovorax sp. SCN45

Strain Fitness in Variovorax sp. SCN45 around GFF3848

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	phage_bap4
				remove
48,135	+	GFF3847	0.18	+0.5
48,136	-	GFF3847	0.18	-0.6
48,136	-	GFF3847	0.18	+0.8
48,136	-	GFF3847	0.18	-0.2
48,537	+	GFF3847	0.54	-1.0
48,537	+	GFF3847	0.54	-0.8
48,537	+	GFF3847	0.54	+0.0
48,537	+	GFF3847	0.54	+0.2
48,537	+	GFF3847	0.54	-0.6
48,538	-	GFF3847	0.54	+0.9
48,538	-	GFF3847	0.54	+0.0
48,538	-	GFF3847	0.54	-1.3
48,538	-	GFF3847	0.54	-1.4
48,538	-	GFF3847	0.54	+0.0
48,538	-	GFF3847	0.54	-1.0
48,538	-	GFF3847	0.54	-0.4
48,538	-	GFF3847	0.54	+1.5
48,538	-	GFF3847	0.54	+0.5
48,538	-	GFF3847	0.54	-1.1
48,538	-	GFF3847	0.54	+0.2
48,538	-	GFF3847	0.54	-0.8
48,538	-	GFF3847	0.54	+0.1
48,603	+	GFF3847	0.60	-0.0
48,603	+	GFF3847	0.60	+0.5
48,603	+	GFF3847	0.60	-0.4
48,603	+	GFF3847	0.60	-0.3
48,603	+	GFF3847	0.60	-0.3
48,603	+	GFF3847	0.60	-0.6
48,603	+	GFF3847	0.60	+0.2
48,603	+	GFF3847	0.60	-0.5
48,603	+	GFF3847	0.60	-0.5
48,603	+	GFF3847	0.60	+0.2
48,604	-	GFF3847	0.60	-1.9
48,604	-	GFF3847	0.60	+0.1
48,604	-	GFF3847	0.60	-0.8
48,604	-	GFF3847	0.60	-0.6
48,604	-	GFF3847	0.60	-0.8
48,840	+	GFF3847	0.81	+0.5
48,840	+	GFF3847	0.81	+0.4
48,840	+	GFF3847	0.81	-1.9
48,840	+	GFF3847	0.81	+0.4
48,840	+	GFF3847	0.81	-0.6
48,840	+	GFF3847	0.81	-0.3
48,840	+	GFF3847	0.81	-0.3
48,840	+	GFF3847	0.81	-0.0
48,841	-	GFF3847	0.81	-0.2
48,841	-	GFF3847	0.81	-0.7
48,841	-	GFF3847	0.81	+0.7
48,980	+			-0.9
48,980	+			+1.8
48,980	+			-0.4
48,980	+			+0.2
48,981	-			+0.0
48,981	-			+0.6
48,981	-			+0.5
48,981	-			-0.7
48,981	-			-1.0
49,061	+			+1.1
49,061	+			-0.0
49,061	+			-0.3
49,061	+			+1.8
49,061	+			-1.2
49,061	+			-0.8
49,061	+			-0.4
49,062	-			-1.1
49,062	-			+0.7
49,062	-			-0.8
49,062	-			-0.6
49,102	+			+0.4
49,103	-			-0.4
49,103	-			+0.1
49,255	+	GFF3848	0.32	-0.5
49,255	+	GFF3848	0.32	-0.8
49,256	-	GFF3848	0.32	-0.1
49,256	-	GFF3848	0.32	-0.2
49,276	+	GFF3848	0.35	-0.6
49,282	+	GFF3848	0.36	-0.2
49,283	-	GFF3848	0.36	+0.3
49,283	-	GFF3848	0.36	+0.2
49,283	-	GFF3848	0.36	+0.2
49,283	-	GFF3848	0.36	-0.2
49,288	+	GFF3848	0.37	+0.5
49,288	+	GFF3848	0.37	+1.8
49,288	+	GFF3848	0.37	-1.0
49,288	+	GFF3848	0.37	-0.5
49,288	+	GFF3848	0.37	-1.0
49,288	+	GFF3848	0.37	-0.1
49,288	+	GFF3848	0.37	-1.8
49,288	+	GFF3848	0.37	+1.1
49,288	+	GFF3848	0.37	-0.3
49,288	+	GFF3848	0.37	-0.3
49,288	+	GFF3848	0.37	-0.6
49,289	-	GFF3848	0.37	+0.5
49,289	-	GFF3848	0.37	-1.5
49,289	-	GFF3848	0.37	+0.8
49,289	-	GFF3848	0.37	-1.2
49,289	-	GFF3848	0.37	+0.2
49,289	-	GFF3848	0.37	-1.9
49,289	-	GFF3848	0.37	+0.1
49,289	-	GFF3848	0.37	-0.7
49,289	-	GFF3848	0.37	+1.1
49,289	-	GFF3848	0.37	-0.5
49,289	-	GFF3848	0.37	-0.2
49,289	-	GFF3848	0.37	-0.6
49,455	+	GFF3848	0.62	-0.2
49,456	-	GFF3848	0.62	+0.1
49,456	-	GFF3848	0.62	-0.7
49,456	-	GFF3848	0.62	-0.5
49,612	+	GFF3848	0.85	+0.2
49,612	+	GFF3848	0.85	-1.0
49,612	+	GFF3848	0.85	-0.2
49,612	+	GFF3848	0.85	-0.1
49,612	+	GFF3848	0.85	-0.9
49,612	+	GFF3848	0.85	+0.0
49,612	+	GFF3848	0.85	-0.2
49,612	+	GFF3848	0.85	-1.0
49,612	+	GFF3848	0.85	+1.5
49,613	-	GFF3848	0.85	-0.1
49,613	-	GFF3848	0.85	-1.1
49,613	-	GFF3848	0.85	-0.6
49,613	-	GFF3848	0.85	-0.2
49,613	-	GFF3848	0.85	-0.0
49,613	-	GFF3848	0.85	+0.5
49,613	-	GFF3848	0.85	-0.1
49,613	-	GFF3848	0.85	-1.7
49,613	-	GFF3848	0.85	-0.9
49,613	-	GFF3848	0.85	-1.7
49,613	-	GFF3848	0.85	-0.6
49,695	+			-0.4
49,695	+			-0.8
49,696	-			-0.3
49,696	-			-0.9
49,972	+	GFF3849	0.65	-0.2
49,972	+	GFF3849	0.65	-1.4
49,972	+	GFF3849	0.65	-0.7
49,972	+	GFF3849	0.65	-0.3
50,067	+			-0.3
50,067	+			-0.7
50,067	+			-0.3
50,067	+			+1.1
50,067	+			-0.3
50,068	-			+1.6
50,068	-			-0.9
50,068	-			-0.5
50,068	-			-0.4
50,068	-			-0.3
50,068	-			-0.5
50,558	+	GFF3850	0.45	-1.0
50,558	+	GFF3850	0.45	-1.3
50,558	+	GFF3850	0.45	-0.9
50,558	+	GFF3850	0.45	-0.6
50,558	+	GFF3850	0.45	-1.1
50,558	+	GFF3850	0.45	+0.2
50,558	+	GFF3850	0.45	-1.0
50,558	+	GFF3850	0.45	-1.3
50,558	+	GFF3850	0.45	+0.1
50,558	+	GFF3850	0.45	+0.1
50,558	+	GFF3850	0.45	-1.0
50,559	-	GFF3850	0.45	-0.7
50,559	-	GFF3850	0.45	-0.0
50,559	-	GFF3850	0.45	-1.2
50,559	-	GFF3850	0.45	-0.4
50,559	-	GFF3850	0.45	+0.0
50,559	-	GFF3850	0.45	-1.5
50,559	-	GFF3850	0.45	-0.7
50,573	+	GFF3850	0.46	-0.3
50,573	+	GFF3850	0.46	+0.1
50,573	+	GFF3850	0.46	-2.2
50,573	+	GFF3850	0.46	-0.5
50,573	+	GFF3850	0.46	+0.0
50,573	+	GFF3850	0.46	+1.1
50,574	-	GFF3850	0.46	-1.4
50,574	-	GFF3850	0.46	-0.8
50,574	-	GFF3850	0.46	-0.2
50,574	-	GFF3850	0.46	-0.6
50,574	-	GFF3850	0.46	-1.3
50,574	-	GFF3850	0.46	-0.4
50,574	-	GFF3850	0.46	-1.0
50,609	+	GFF3850	0.50	+0.5
50,609	+	GFF3850	0.50	-1.0
50,609	+	GFF3850	0.50	-0.5
50,609	+	GFF3850	0.50	-0.2
50,610	-	GFF3850	0.50	-0.6
50,610	-	GFF3850	0.50	+0.9
50,610	-	GFF3850	0.50	-0.8
50,610	-	GFF3850	0.50	-0.3
50,612	+	GFF3850	0.50	-1.0
50,612	+	GFF3850	0.50	-0.5
50,612	+	GFF3850	0.50	-0.1
50,612	+	GFF3850	0.50	-0.4
50,612	+	GFF3850	0.50	-0.9
50,612	+	GFF3850	0.50	-0.6
50,612	+	GFF3850	0.50	-0.8
50,612	+	GFF3850	0.50	-0.8
50,612	+	GFF3850	0.50	-0.5
50,612	+	GFF3850	0.50	+0.6
50,612	+	GFF3850	0.50	+0.3
50,612	+	GFF3850	0.50	-1.0
50,612	+	GFF3850	0.50	+1.7
50,612	+	GFF3850	0.50	-0.1
50,612	+	GFF3850	0.50	+0.5
50,612	+	GFF3850	0.50	-0.3
50,612	+	GFF3850	0.50	-0.1
50,612	+	GFF3850	0.50	+0.1
50,612	+	GFF3850	0.50	+0.4
50,613	-	GFF3850	0.50	-0.6
50,613	-	GFF3850	0.50	-0.7
50,613	-	GFF3850	0.50	+0.1
50,613	-	GFF3850	0.50	+1.1
50,613	-	GFF3850	0.50	-0.3
50,613	-	GFF3850	0.50	-0.2
50,613	-	GFF3850	0.50	-0.8
50,613	-	GFF3850	0.50	+0.4
50,613	-	GFF3850	0.50	+0.1
50,613	-	GFF3850	0.50	+0.8
50,613	-	GFF3850	0.50	-0.6
50,613	-	GFF3850	0.50	-0.2
50,613	-	GFF3850	0.50	+0.2
50,613	-	GFF3850	0.50	+0.2
50,613	-	GFF3850	0.50	+1.6
50,613	-	GFF3850	0.50	+0.0
50,613	-	GFF3850	0.50	-0.5
50,613	-	GFF3850	0.50	-0.5
50,639	+	GFF3850	0.53	-1.0
50,639	+	GFF3850	0.53	-0.5
50,639	+	GFF3850	0.53	+0.8
50,639	+	GFF3850	0.53	-0.4
50,639	+	GFF3850	0.53	-0.0
50,639	+	GFF3850	0.53	-1.3
50,639	+	GFF3850	0.53	+0.8
50,639	+	GFF3850	0.53	+0.1
50,639	+	GFF3850	0.53	+1.1
50,639	+	GFF3850	0.53	+0.0
50,640	-	GFF3850	0.53	+0.2
50,640	-	GFF3850	0.53	+0.4
50,640	-	GFF3850	0.53	-0.5
50,640	-	GFF3850	0.53	-0.1
50,640	-	GFF3850	0.53	-1.2

Or see this region's nucleotide sequence