Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3833 and GFF3834 are separated by 168 nucleotides GFF3834 and GFF3835 overlap by 4 nucleotides GFF3835 and GFF3836 are separated by 64 nucleotides
GFF3833 - FIG01056426: hypothetical protein, at 23,586 to 24,842
GFF3833
GFF3834 - hypothetical protein, at 25,011 to 25,556
GFF3834
GFF3835 - ADP-ribosylglycohydrolase family protein, at 25,553 to 25,954
GFF3835
GFF3836 - Cyclic beta-1,2-glucan synthase (EC 2.4.1.-), at 26,019 to 34,184
GFF3836
Position (kb) 25
26 Strain fitness (log2 ratio) -1
0
1
2 at 24.019 kb on + strand, within GFF3833 at 24.020 kb on - strand, within GFF3833 at 24.020 kb on - strand, within GFF3833 at 24.020 kb on - strand, within GFF3833 at 24.020 kb on - strand, within GFF3833 at 24.088 kb on + strand, within GFF3833 at 24.089 kb on - strand, within GFF3833 at 24.089 kb on - strand, within GFF3833 at 24.089 kb on - strand, within GFF3833 at 24.089 kb on - strand, within GFF3833 at 24.094 kb on + strand, within GFF3833 at 24.094 kb on + strand, within GFF3833 at 24.094 kb on + strand, within GFF3833 at 24.094 kb on + strand, within GFF3833 at 24.095 kb on - strand, within GFF3833 at 24.095 kb on - strand, within GFF3833 at 24.095 kb on - strand, within GFF3833 at 24.095 kb on - strand, within GFF3833 at 24.095 kb on - strand, within GFF3833 at 24.095 kb on - strand, within GFF3833 at 24.358 kb on + strand, within GFF3833 at 24.359 kb on - strand, within GFF3833 at 24.359 kb on - strand, within GFF3833 at 24.716 kb on + strand, within GFF3833 at 24.947 kb on + strand at 24.947 kb on + strand at 24.948 kb on - strand at 24.948 kb on - strand at 25.012 kb on + strand at 25.013 kb on - strand at 25.018 kb on + strand at 25.018 kb on + strand at 25.018 kb on + strand at 25.019 kb on - strand at 25.019 kb on - strand at 25.019 kb on - strand at 25.019 kb on - strand at 25.380 kb on - strand, within GFF3834 at 25.468 kb on + strand, within GFF3834 at 25.688 kb on + strand, within GFF3835 at 25.688 kb on + strand, within GFF3835 at 25.689 kb on - strand, within GFF3835 at 25.689 kb on - strand, within GFF3835 at 25.689 kb on - strand, within GFF3835 at 26.001 kb on - strand at 26.281 kb on + strand at 26.281 kb on + strand at 26.308 kb on + strand at 26.308 kb on + strand at 26.308 kb on - strand at 26.309 kb on - strand at 26.309 kb on - strand at 26.309 kb on - strand at 26.323 kb on + strand at 26.323 kb on + strand at 26.323 kb on + strand at 26.324 kb on - strand at 26.324 kb on - strand at 26.345 kb on - strand at 26.485 kb on + strand at 26.486 kb on - strand at 26.486 kb on - strand at 26.530 kb on + strand at 26.531 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 24,019 + GFF3833 0.34 -0.9 24,020 - GFF3833 0.35 -1.0 24,020 - GFF3833 0.35 +0.3 24,020 - GFF3833 0.35 -0.3 24,020 - GFF3833 0.35 -0.6 24,088 + GFF3833 0.40 +0.8 24,089 - GFF3833 0.40 +0.0 24,089 - GFF3833 0.40 -1.3 24,089 - GFF3833 0.40 +0.2 24,089 - GFF3833 0.40 -0.7 24,094 + GFF3833 0.40 -0.4 24,094 + GFF3833 0.40 +0.3 24,094 + GFF3833 0.40 +1.2 24,094 + GFF3833 0.40 -0.8 24,095 - GFF3833 0.40 -0.2 24,095 - GFF3833 0.40 -0.9 24,095 - GFF3833 0.40 +0.8 24,095 - GFF3833 0.40 -0.3 24,095 - GFF3833 0.40 -0.2 24,095 - GFF3833 0.40 +0.0 24,358 + GFF3833 0.61 -0.4 24,359 - GFF3833 0.61 +0.4 24,359 - GFF3833 0.61 -0.2 24,716 + GFF3833 0.90 -1.3 24,947 + -0.1 24,947 + -0.4 24,948 - -0.6 24,948 - +0.0 25,012 + +0.7 25,013 - -0.8 25,018 + +0.2 25,018 + +0.7 25,018 + +0.5 25,019 - +0.1 25,019 - -0.0 25,019 - +0.8 25,019 - +0.3 25,380 - GFF3834 0.68 -0.7 25,468 + GFF3834 0.84 -1.2 25,688 + GFF3835 0.34 +0.4 25,688 + GFF3835 0.34 +0.4 25,689 - GFF3835 0.34 -0.8 25,689 - GFF3835 0.34 -0.5 25,689 - GFF3835 0.34 +0.2 26,001 - +1.8 26,281 + -0.0 26,281 + +0.1 26,308 + -0.9 26,308 + +1.0 26,308 - +0.7 26,309 - -0.0 26,309 - -1.4 26,309 - -0.5 26,323 + -0.3 26,323 + -1.5 26,323 + +0.0 26,324 - -0.1 26,324 - -1.0 26,345 - +0.1 26,485 + +1.2 26,486 - +0.1 26,486 - -0.8 26,530 + -0.3 26,531 - +0.8
Or see this region's nucleotide sequence