Strain Fitness in Variovorax sp. SCN45 around GFF3810

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3809 and GFF3810 are separated by 32 nucleotidesGFF3810 and GFF3811 are separated by 7 nucleotides GFF3809 - Outer membrane receptor proteins, mostly Fe transport, at 308,741 to 311,047 GFF3809 GFF3810 - Conserved membrane protein in copper uptake, YcnI / Copper metallochaperone PCu(A)C, inserts Cu(I) into cytochrome oxidase subunit II, at 311,080 to 311,991 GFF3810 GFF3811 - Cardiolipin synthase (EC 2.7.8.-) phosphatidylethanolamine-utilizing, bacterial type ClsC, at 311,999 to 313,723 GFF3811 Position (kb) 311 312Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 310.151 kb on + strand, within GFF3809at 310.151 kb on + strand, within GFF3809at 310.151 kb on + strand, within GFF3809at 310.151 kb on + strand, within GFF3809at 310.152 kb on - strand, within GFF3809at 310.152 kb on - strand, within GFF3809at 310.152 kb on - strand, within GFF3809at 310.152 kb on - strand, within GFF3809at 310.226 kb on + strand, within GFF3809at 310.226 kb on + strand, within GFF3809at 310.227 kb on - strand, within GFF3809at 310.286 kb on + strand, within GFF3809at 310.286 kb on + strand, within GFF3809at 310.286 kb on + strand, within GFF3809at 310.286 kb on + strand, within GFF3809at 310.286 kb on + strand, within GFF3809at 310.286 kb on + strand, within GFF3809at 310.286 kb on + strand, within GFF3809at 310.287 kb on - strand, within GFF3809at 310.287 kb on - strand, within GFF3809at 310.287 kb on - strand, within GFF3809at 310.287 kb on - strand, within GFF3809at 310.287 kb on - strand, within GFF3809at 310.287 kb on - strand, within GFF3809at 310.287 kb on - strand, within GFF3809at 310.362 kb on + strand, within GFF3809at 310.388 kb on + strand, within GFF3809at 310.388 kb on + strand, within GFF3809at 310.388 kb on + strand, within GFF3809at 310.388 kb on + strand, within GFF3809at 310.388 kb on + strand, within GFF3809at 310.389 kb on - strand, within GFF3809at 310.389 kb on - strand, within GFF3809at 310.389 kb on - strand, within GFF3809at 310.389 kb on - strand, within GFF3809at 310.389 kb on - strand, within GFF3809at 310.389 kb on - strand, within GFF3809at 310.389 kb on - strand, within GFF3809at 310.389 kb on - strand, within GFF3809at 310.553 kb on + strand, within GFF3809at 310.553 kb on + strand, within GFF3809at 310.553 kb on + strand, within GFF3809at 310.553 kb on + strand, within GFF3809at 310.553 kb on + strand, within GFF3809at 310.553 kb on + strand, within GFF3809at 310.553 kb on + strand, within GFF3809at 310.553 kb on + strand, within GFF3809at 310.553 kb on + strand, within GFF3809at 310.553 kb on + strand, within GFF3809at 310.553 kb on + strand, within GFF3809at 310.553 kb on + strand, within GFF3809at 310.554 kb on - strand, within GFF3809at 310.554 kb on - strand, within GFF3809at 310.554 kb on - strand, within GFF3809at 310.554 kb on - strand, within GFF3809at 310.554 kb on - strand, within GFF3809at 310.554 kb on - strand, within GFF3809at 310.554 kb on - strand, within GFF3809at 310.554 kb on - strand, within GFF3809at 310.554 kb on - strand, within GFF3809at 310.554 kb on - strand, within GFF3809at 310.554 kb on - strand, within GFF3809at 310.554 kb on - strand, within GFF3809at 310.554 kb on - strand, within GFF3809at 310.554 kb on - strand, within GFF3809at 310.555 kb on + strand, within GFF3809at 310.556 kb on - strand, within GFF3809at 310.556 kb on - strand, within GFF3809at 310.556 kb on - strand, within GFF3809at 310.784 kb on + strand, within GFF3809at 310.784 kb on + strand, within GFF3809at 310.808 kb on + strand, within GFF3809at 310.808 kb on + strand, within GFF3809at 310.808 kb on + strand, within GFF3809at 310.808 kb on + strand, within GFF3809at 310.808 kb on + strand, within GFF3809at 310.808 kb on + strand, within GFF3809at 310.808 kb on + strand, within GFF3809at 310.808 kb on + strand, within GFF3809at 310.808 kb on + strand, within GFF3809at 310.808 kb on + strand, within GFF3809at 310.809 kb on - strand, within GFF3809at 310.809 kb on - strand, within GFF3809at 310.809 kb on - strand, within GFF3809at 310.809 kb on - strand, within GFF3809at 310.809 kb on - strand, within GFF3809at 310.809 kb on - strand, within GFF3809at 310.809 kb on - strand, within GFF3809at 310.826 kb on + strandat 310.826 kb on + strandat 310.827 kb on - strandat 310.827 kb on - strandat 310.827 kb on - strandat 310.827 kb on - strandat 310.841 kb on + strandat 310.841 kb on + strandat 310.841 kb on + strandat 310.842 kb on - strandat 310.880 kb on + strandat 310.880 kb on + strandat 310.880 kb on + strandat 310.880 kb on + strandat 310.880 kb on + strandat 310.880 kb on + strandat 310.880 kb on + strandat 310.880 kb on + strandat 310.880 kb on + strandat 310.880 kb on + strandat 310.880 kb on + strandat 310.880 kb on + strandat 310.880 kb on + strandat 310.880 kb on + strandat 310.880 kb on + strandat 310.880 kb on + strandat 310.881 kb on - strandat 310.881 kb on - strandat 310.881 kb on - strandat 310.881 kb on - strandat 310.881 kb on - strandat 310.881 kb on - strandat 310.881 kb on - strandat 310.920 kb on + strandat 310.920 kb on + strandat 310.920 kb on + strandat 310.920 kb on + strandat 310.920 kb on + strandat 310.920 kb on + strandat 310.920 kb on + strandat 310.920 kb on + strandat 310.921 kb on - strandat 310.921 kb on - strandat 310.921 kb on - strandat 310.921 kb on - strandat 310.985 kb on + strandat 310.985 kb on + strandat 310.985 kb on + strandat 310.985 kb on + strandat 310.985 kb on + strandat 310.985 kb on + strandat 310.985 kb on + strandat 310.985 kb on + strandat 310.985 kb on + strandat 310.986 kb on - strandat 310.986 kb on - strandat 310.986 kb on - strandat 310.986 kb on - strandat 310.986 kb on - strandat 310.986 kb on - strandat 311.018 kb on + strandat 311.018 kb on + strandat 311.018 kb on + strandat 311.018 kb on + strandat 311.018 kb on + strandat 311.018 kb on + strandat 311.018 kb on + strandat 311.018 kb on + strandat 311.018 kb on + strandat 311.018 kb on + strandat 311.018 kb on + strandat 311.018 kb on + strandat 311.018 kb on + strandat 311.018 kb on + strandat 311.018 kb on + strandat 311.018 kb on + strandat 311.018 kb on + strandat 311.018 kb on + strandat 311.019 kb on - strandat 311.019 kb on - strandat 311.019 kb on - strandat 311.019 kb on - strandat 311.019 kb on - strandat 311.019 kb on - strandat 311.019 kb on - strandat 311.019 kb on - strandat 311.019 kb on - strandat 311.019 kb on - strandat 311.019 kb on - strandat 311.019 kb on - strandat 311.019 kb on - strandat 311.019 kb on - strandat 311.019 kb on - strandat 311.019 kb on - strandat 311.019 kb on - strandat 311.203 kb on + strand, within GFF3810at 311.203 kb on + strand, within GFF3810at 311.203 kb on + strand, within GFF3810at 311.203 kb on + strand, within GFF3810at 311.204 kb on - strand, within GFF3810at 311.204 kb on - strand, within GFF3810at 311.204 kb on - strand, within GFF3810at 311.288 kb on + strand, within GFF3810at 311.288 kb on + strand, within GFF3810at 311.288 kb on + strand, within GFF3810at 311.288 kb on + strand, within GFF3810at 311.288 kb on + strand, within GFF3810at 311.289 kb on - strand, within GFF3810at 311.289 kb on - strand, within GFF3810at 311.289 kb on - strand, within GFF3810at 311.289 kb on - strand, within GFF3810at 311.749 kb on + strand, within GFF3810at 311.818 kb on + strand, within GFF3810at 311.818 kb on + strand, within GFF3810at 311.818 kb on + strand, within GFF3810at 311.819 kb on - strand, within GFF3810at 311.819 kb on - strand, within GFF3810at 311.937 kb on - strandat 312.000 kb on + strandat 312.405 kb on + strand, within GFF3811at 312.405 kb on + strand, within GFF3811at 312.405 kb on + strand, within GFF3811at 312.406 kb on - strand, within GFF3811at 312.406 kb on - strand, within GFF3811at 312.406 kb on - strand, within GFF3811at 312.406 kb on - strand, within GFF3811at 312.450 kb on + strand, within GFF3811at 312.450 kb on + strand, within GFF3811at 312.451 kb on - strand, within GFF3811at 312.570 kb on + strand, within GFF3811at 312.570 kb on + strand, within GFF3811at 312.570 kb on + strand, within GFF3811at 312.570 kb on + strand, within GFF3811at 312.570 kb on + strand, within GFF3811at 312.571 kb on - strand, within GFF3811at 312.571 kb on - strand, within GFF3811

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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310,151 + GFF3809 0.61 +0.9
310,151 + GFF3809 0.61 -0.3
310,151 + GFF3809 0.61 +1.4
310,151 + GFF3809 0.61 -1.0
310,152 - GFF3809 0.61 -0.3
310,152 - GFF3809 0.61 -0.4
310,152 - GFF3809 0.61 +0.1
310,152 - GFF3809 0.61 +0.1
310,226 + GFF3809 0.64 -0.0
310,226 + GFF3809 0.64 +1.7
310,227 - GFF3809 0.64 -0.4
310,286 + GFF3809 0.67 -1.1
310,286 + GFF3809 0.67 +1.1
310,286 + GFF3809 0.67 +1.0
310,286 + GFF3809 0.67 -0.1
310,286 + GFF3809 0.67 -0.2
310,286 + GFF3809 0.67 +0.1
310,286 + GFF3809 0.67 -1.0
310,287 - GFF3809 0.67 -1.5
310,287 - GFF3809 0.67 -0.4
310,287 - GFF3809 0.67 -0.2
310,287 - GFF3809 0.67 -1.4
310,287 - GFF3809 0.67 -0.3
310,287 - GFF3809 0.67 -0.3
310,287 - GFF3809 0.67 -0.5
310,362 + GFF3809 0.70 +0.6
310,388 + GFF3809 0.71 +0.2
310,388 + GFF3809 0.71 -0.6
310,388 + GFF3809 0.71 +1.0
310,388 + GFF3809 0.71 +0.6
310,388 + GFF3809 0.71 +1.7
310,389 - GFF3809 0.71 -1.2
310,389 - GFF3809 0.71 -0.3
310,389 - GFF3809 0.71 -0.7
310,389 - GFF3809 0.71 -0.2
310,389 - GFF3809 0.71 -0.3
310,389 - GFF3809 0.71 +1.1
310,389 - GFF3809 0.71 -0.3
310,389 - GFF3809 0.71 +0.4
310,553 + GFF3809 0.79 +0.4
310,553 + GFF3809 0.79 -0.3
310,553 + GFF3809 0.79 -0.2
310,553 + GFF3809 0.79 +0.1
310,553 + GFF3809 0.79 +0.3
310,553 + GFF3809 0.79 -1.0
310,553 + GFF3809 0.79 +0.0
310,553 + GFF3809 0.79 +1.6
310,553 + GFF3809 0.79 -0.2
310,553 + GFF3809 0.79 +0.3
310,553 + GFF3809 0.79 -0.6
310,553 + GFF3809 0.79 +0.7
310,554 - GFF3809 0.79 -0.9
310,554 - GFF3809 0.79 +0.2
310,554 - GFF3809 0.79 -0.5
310,554 - GFF3809 0.79 -0.9
310,554 - GFF3809 0.79 +0.7
310,554 - GFF3809 0.79 +0.3
310,554 - GFF3809 0.79 -0.8
310,554 - GFF3809 0.79 +0.1
310,554 - GFF3809 0.79 +0.1
310,554 - GFF3809 0.79 +0.9
310,554 - GFF3809 0.79 -0.4
310,554 - GFF3809 0.79 -0.3
310,554 - GFF3809 0.79 +0.4
310,554 - GFF3809 0.79 +0.2
310,555 + GFF3809 0.79 +0.3
310,556 - GFF3809 0.79 +0.4
310,556 - GFF3809 0.79 +0.5
310,556 - GFF3809 0.79 -1.5
310,784 + GFF3809 0.89 +0.3
310,784 + GFF3809 0.89 -0.2
310,808 + GFF3809 0.90 -0.9
310,808 + GFF3809 0.90 +2.4
310,808 + GFF3809 0.90 -0.2
310,808 + GFF3809 0.90 +2.3
310,808 + GFF3809 0.90 -0.2
310,808 + GFF3809 0.90 -1.5
310,808 + GFF3809 0.90 +0.6
310,808 + GFF3809 0.90 -0.1
310,808 + GFF3809 0.90 -0.8
310,808 + GFF3809 0.90 -0.8
310,809 - GFF3809 0.90 -1.8
310,809 - GFF3809 0.90 -0.6
310,809 - GFF3809 0.90 -0.8
310,809 - GFF3809 0.90 +0.8
310,809 - GFF3809 0.90 -0.6
310,809 - GFF3809 0.90 +0.0
310,809 - GFF3809 0.90 -0.2
310,826 + -1.0
310,826 + -0.3
310,827 - +0.3
310,827 - -0.1
310,827 - -1.7
310,827 - -0.5
310,841 + +0.5
310,841 + -0.7
310,841 + +2.0
310,842 - +0.7
310,880 + +0.3
310,880 + -0.2
310,880 + -1.3
310,880 + +0.1
310,880 + -1.5
310,880 + -0.6
310,880 + +0.4
310,880 + +0.0
310,880 + -0.7
310,880 + -0.0
310,880 + -0.7
310,880 + +0.2
310,880 + +1.0
310,880 + +0.2
310,880 + -0.3
310,880 + -0.7
310,881 - -0.0
310,881 - -0.0
310,881 - +0.8
310,881 - +0.2
310,881 - +0.5
310,881 - +0.9
310,881 - +0.0
310,920 + -0.1
310,920 + +1.3
310,920 + -0.1
310,920 + -0.5
310,920 + +0.2
310,920 + -1.3
310,920 + +0.6
310,920 + +0.2
310,921 - +0.0
310,921 - -0.8
310,921 - -0.6
310,921 - +0.0
310,985 + +0.1
310,985 + -0.5
310,985 + -0.5
310,985 + +1.1
310,985 + +0.2
310,985 + -0.0
310,985 + +0.3
310,985 + +1.0
310,985 + -1.3
310,986 - -0.3
310,986 - +0.2
310,986 - -1.2
310,986 - +1.2
310,986 - +0.2
310,986 - +0.0
311,018 + +0.0
311,018 + +0.1
311,018 + -0.3
311,018 + +0.3
311,018 + -1.8
311,018 + -0.3
311,018 + +0.3
311,018 + +1.2
311,018 + -0.7
311,018 + +0.7
311,018 + +0.4
311,018 + +0.2
311,018 + -0.0
311,018 + +0.6
311,018 + +0.6
311,018 + -0.2
311,018 + -0.6
311,018 + -1.0
311,019 - -0.8
311,019 - +0.3
311,019 - +0.2
311,019 - -1.0
311,019 - -0.3
311,019 - +0.2
311,019 - -0.4
311,019 - +2.0
311,019 - -0.1
311,019 - -0.1
311,019 - +0.4
311,019 - +0.0
311,019 - -0.5
311,019 - -0.0
311,019 - -0.4
311,019 - -0.8
311,019 - -0.5
311,203 + GFF3810 0.13 -0.6
311,203 + GFF3810 0.13 -0.7
311,203 + GFF3810 0.13 -0.7
311,203 + GFF3810 0.13 -0.0
311,204 - GFF3810 0.14 -0.2
311,204 - GFF3810 0.14 -1.4
311,204 - GFF3810 0.14 +1.4
311,288 + GFF3810 0.23 +0.3
311,288 + GFF3810 0.23 +0.3
311,288 + GFF3810 0.23 -0.5
311,288 + GFF3810 0.23 +1.2
311,288 + GFF3810 0.23 +0.6
311,289 - GFF3810 0.23 -0.0
311,289 - GFF3810 0.23 -0.1
311,289 - GFF3810 0.23 +0.5
311,289 - GFF3810 0.23 -0.4
311,749 + GFF3810 0.73 +1.0
311,818 + GFF3810 0.81 +1.4
311,818 + GFF3810 0.81 -0.8
311,818 + GFF3810 0.81 +4.6
311,819 - GFF3810 0.81 +0.1
311,819 - GFF3810 0.81 +0.1
311,937 - -0.7
312,000 + +1.6
312,405 + GFF3811 0.24 -0.8
312,405 + GFF3811 0.24 +0.9
312,405 + GFF3811 0.24 -0.1
312,406 - GFF3811 0.24 -0.5
312,406 - GFF3811 0.24 -1.0
312,406 - GFF3811 0.24 -1.0
312,406 - GFF3811 0.24 +0.2
312,450 + GFF3811 0.26 -0.4
312,450 + GFF3811 0.26 -0.4
312,451 - GFF3811 0.26 +0.4
312,570 + GFF3811 0.33 +1.0
312,570 + GFF3811 0.33 -0.2
312,570 + GFF3811 0.33 +0.3
312,570 + GFF3811 0.33 -1.2
312,570 + GFF3811 0.33 -0.0
312,571 - GFF3811 0.33 -0.3
312,571 - GFF3811 0.33 +0.8

Or see this region's nucleotide sequence