Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3799 and GFF3800 are separated by 79 nucleotides GFF3800 and GFF3801 are separated by 18 nucleotides GFF3801 and GFF3802 are separated by 89 nucleotides
GFF3799 - Putative PROLIN-rich signal peptide protein, at 298,979 to 300,211
GFF3799
GFF3800 - Fumarylacetoacetate hydrolase family protein, at 300,291 to 301,388
GFF3800
GFF3801 - Response regulator receiver protein, at 301,407 to 302,186
GFF3801
GFF3802 - 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases, at 302,276 to 304,045
GFF3802
Position (kb) 300
301
302 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 299.291 kb on + strand, within GFF3799 at 299.291 kb on + strand, within GFF3799 at 299.292 kb on - strand, within GFF3799 at 299.424 kb on + strand, within GFF3799 at 299.425 kb on - strand, within GFF3799 at 299.521 kb on - strand, within GFF3799 at 299.521 kb on - strand, within GFF3799 at 299.521 kb on - strand, within GFF3799 at 299.626 kb on + strand, within GFF3799 at 299.626 kb on + strand, within GFF3799 at 299.627 kb on - strand, within GFF3799 at 299.627 kb on - strand, within GFF3799 at 300.226 kb on + strand at 300.226 kb on + strand at 300.226 kb on + strand at 300.226 kb on + strand at 300.226 kb on + strand at 300.227 kb on - strand at 300.227 kb on - strand at 300.251 kb on + strand at 300.251 kb on + strand at 300.251 kb on + strand at 300.251 kb on + strand at 300.252 kb on - strand at 300.252 kb on - strand at 300.252 kb on - strand at 300.252 kb on - strand at 300.252 kb on - strand at 300.252 kb on - strand at 300.252 kb on - strand at 300.252 kb on - strand at 300.252 kb on - strand at 300.252 kb on - strand at 300.282 kb on + strand at 300.282 kb on + strand at 300.282 kb on + strand at 300.283 kb on - strand at 300.283 kb on - strand at 300.369 kb on + strand at 300.369 kb on + strand at 300.369 kb on + strand at 300.370 kb on - strand at 300.370 kb on - strand at 300.370 kb on - strand at 300.370 kb on - strand at 300.370 kb on - strand at 300.447 kb on + strand, within GFF3800 at 300.447 kb on + strand, within GFF3800 at 300.448 kb on - strand, within GFF3800 at 300.448 kb on - strand, within GFF3800 at 300.448 kb on - strand, within GFF3800 at 300.528 kb on + strand, within GFF3800 at 300.528 kb on + strand, within GFF3800 at 300.529 kb on - strand, within GFF3800 at 300.552 kb on + strand, within GFF3800 at 300.552 kb on + strand, within GFF3800 at 300.553 kb on - strand, within GFF3800 at 300.612 kb on + strand, within GFF3800 at 300.612 kb on + strand, within GFF3800 at 300.612 kb on + strand, within GFF3800 at 300.613 kb on - strand, within GFF3800 at 300.613 kb on - strand, within GFF3800 at 300.613 kb on - strand, within GFF3800 at 300.613 kb on - strand, within GFF3800 at 300.630 kb on + strand, within GFF3800 at 300.630 kb on + strand, within GFF3800 at 300.630 kb on + strand, within GFF3800 at 300.630 kb on + strand, within GFF3800 at 300.630 kb on + strand, within GFF3800 at 300.630 kb on + strand, within GFF3800 at 300.630 kb on + strand, within GFF3800 at 300.630 kb on + strand, within GFF3800 at 300.630 kb on + strand, within GFF3800 at 300.630 kb on + strand, within GFF3800 at 300.631 kb on - strand, within GFF3800 at 300.631 kb on - strand, within GFF3800 at 300.631 kb on - strand, within GFF3800 at 300.631 kb on - strand, within GFF3800 at 300.631 kb on - strand, within GFF3800 at 300.631 kb on - strand, within GFF3800 at 300.631 kb on - strand, within GFF3800 at 301.138 kb on - strand, within GFF3800 at 301.138 kb on - strand, within GFF3800 at 301.138 kb on - strand, within GFF3800 at 301.191 kb on + strand, within GFF3800 at 301.191 kb on + strand, within GFF3800 at 301.191 kb on + strand, within GFF3800 at 301.192 kb on - strand, within GFF3800 at 301.192 kb on - strand, within GFF3800 at 301.192 kb on - strand, within GFF3800 at 301.192 kb on - strand, within GFF3800 at 301.449 kb on + strand at 301.450 kb on - strand at 301.450 kb on - strand at 301.475 kb on - strand at 301.738 kb on + strand, within GFF3801 at 301.739 kb on - strand, within GFF3801 at 301.739 kb on - strand, within GFF3801 at 301.816 kb on + strand, within GFF3801 at 301.816 kb on + strand, within GFF3801 at 301.816 kb on + strand, within GFF3801 at 301.832 kb on - strand, within GFF3801 at 301.954 kb on + strand, within GFF3801 at 301.954 kb on + strand, within GFF3801 at 301.954 kb on + strand, within GFF3801 at 301.954 kb on + strand, within GFF3801 at 301.954 kb on + strand, within GFF3801 at 301.955 kb on - strand, within GFF3801 at 301.988 kb on - strand, within GFF3801 at 302.086 kb on + strand, within GFF3801 at 302.086 kb on + strand, within GFF3801 at 302.086 kb on + strand, within GFF3801 at 302.086 kb on + strand, within GFF3801 at 302.087 kb on - strand, within GFF3801 at 302.087 kb on - strand, within GFF3801 at 302.087 kb on - strand, within GFF3801 at 302.087 kb on - strand, within GFF3801 at 302.215 kb on + strand at 302.219 kb on + strand at 302.219 kb on + strand at 302.219 kb on + strand at 302.219 kb on + strand at 302.219 kb on + strand at 302.219 kb on + strand at 302.219 kb on + strand at 302.219 kb on + strand at 302.220 kb on - strand at 302.220 kb on - strand at 302.220 kb on - strand at 302.220 kb on - strand at 302.220 kb on - strand at 302.220 kb on - strand at 302.220 kb on - strand at 302.227 kb on - strand at 302.227 kb on - strand at 302.227 kb on - strand at 302.234 kb on + strand at 302.234 kb on + strand at 302.234 kb on + strand at 302.235 kb on - strand at 302.235 kb on - strand at 302.378 kb on + strand at 302.378 kb on + strand at 302.378 kb on + strand at 302.379 kb on - strand at 302.379 kb on - strand at 302.379 kb on - strand at 302.379 kb on - strand at 302.379 kb on - strand at 302.379 kb on - strand at 302.387 kb on + strand at 302.387 kb on + strand at 302.387 kb on + strand at 302.387 kb on + strand at 302.388 kb on - strand at 302.388 kb on - strand at 302.388 kb on - strand at 302.388 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 299,291 + GFF3799 0.25 +0.8 299,291 + GFF3799 0.25 +0.2 299,292 - GFF3799 0.25 -0.7 299,424 + GFF3799 0.36 -0.1 299,425 - GFF3799 0.36 +0.7 299,521 - GFF3799 0.44 -0.0 299,521 - GFF3799 0.44 +0.8 299,521 - GFF3799 0.44 +0.2 299,626 + GFF3799 0.52 -0.2 299,626 + GFF3799 0.52 -1.3 299,627 - GFF3799 0.53 -1.0 299,627 - GFF3799 0.53 +0.3 300,226 + -0.3 300,226 + +0.2 300,226 + -0.2 300,226 + -0.1 300,226 + +0.4 300,227 - -0.3 300,227 - -0.0 300,251 + +0.1 300,251 + -0.1 300,251 + -0.2 300,251 + +1.0 300,252 - -1.1 300,252 - +1.7 300,252 - -0.7 300,252 - -1.0 300,252 - -0.5 300,252 - +0.2 300,252 - -0.8 300,252 - +1.4 300,252 - -0.4 300,252 - -0.1 300,282 + +1.2 300,282 + -0.1 300,282 + -0.7 300,283 - -1.3 300,283 - -0.9 300,369 + -0.2 300,369 + -0.2 300,369 + +0.1 300,370 - +0.2 300,370 - +0.3 300,370 - -1.3 300,370 - +0.1 300,370 - -0.0 300,447 + GFF3800 0.14 +0.5 300,447 + GFF3800 0.14 +0.4 300,448 - GFF3800 0.14 +1.1 300,448 - GFF3800 0.14 +0.4 300,448 - GFF3800 0.14 -0.2 300,528 + GFF3800 0.22 +1.9 300,528 + GFF3800 0.22 -0.0 300,529 - GFF3800 0.22 +2.0 300,552 + GFF3800 0.24 +0.3 300,552 + GFF3800 0.24 -0.5 300,553 - GFF3800 0.24 +1.3 300,612 + GFF3800 0.29 -0.9 300,612 + GFF3800 0.29 +0.3 300,612 + GFF3800 0.29 -0.5 300,613 - GFF3800 0.29 +0.3 300,613 - GFF3800 0.29 -0.6 300,613 - GFF3800 0.29 +0.3 300,613 - GFF3800 0.29 +0.2 300,630 + GFF3800 0.31 -0.3 300,630 + GFF3800 0.31 +1.0 300,630 + GFF3800 0.31 +0.4 300,630 + GFF3800 0.31 -0.1 300,630 + GFF3800 0.31 +2.0 300,630 + GFF3800 0.31 -0.2 300,630 + GFF3800 0.31 +2.0 300,630 + GFF3800 0.31 -0.5 300,630 + GFF3800 0.31 -0.3 300,630 + GFF3800 0.31 -0.2 300,631 - GFF3800 0.31 -0.2 300,631 - GFF3800 0.31 +0.7 300,631 - GFF3800 0.31 -0.4 300,631 - GFF3800 0.31 -1.0 300,631 - GFF3800 0.31 +1.1 300,631 - GFF3800 0.31 +0.2 300,631 - GFF3800 0.31 +0.2 301,138 - GFF3800 0.77 +0.3 301,138 - GFF3800 0.77 +0.8 301,138 - GFF3800 0.77 -0.5 301,191 + GFF3800 0.82 -0.3 301,191 + GFF3800 0.82 +0.2 301,191 + GFF3800 0.82 +1.2 301,192 - GFF3800 0.82 +0.8 301,192 - GFF3800 0.82 +0.4 301,192 - GFF3800 0.82 -0.8 301,192 - GFF3800 0.82 +0.1 301,449 + -1.4 301,450 - -0.4 301,450 - -0.9 301,475 - -0.0 301,738 + GFF3801 0.42 +1.4 301,739 - GFF3801 0.43 +0.5 301,739 - GFF3801 0.43 -0.6 301,816 + GFF3801 0.52 -0.6 301,816 + GFF3801 0.52 +0.5 301,816 + GFF3801 0.52 -1.0 301,832 - GFF3801 0.54 -0.9 301,954 + GFF3801 0.70 -1.8 301,954 + GFF3801 0.70 -0.7 301,954 + GFF3801 0.70 +1.2 301,954 + GFF3801 0.70 -0.1 301,954 + GFF3801 0.70 -0.9 301,955 - GFF3801 0.70 -0.4 301,988 - GFF3801 0.74 -0.1 302,086 + GFF3801 0.87 +0.2 302,086 + GFF3801 0.87 +0.1 302,086 + GFF3801 0.87 +0.9 302,086 + GFF3801 0.87 -0.2 302,087 - GFF3801 0.87 -1.0 302,087 - GFF3801 0.87 -1.2 302,087 - GFF3801 0.87 +0.2 302,087 - GFF3801 0.87 +2.0 302,215 + -1.5 302,219 + -0.8 302,219 + -0.2 302,219 + -0.3 302,219 + +0.8 302,219 + +1.0 302,219 + +0.7 302,219 + +3.0 302,219 + +0.2 302,220 - -0.6 302,220 - +1.7 302,220 - -0.7 302,220 - -0.3 302,220 - -0.4 302,220 - +0.2 302,220 - -0.4 302,227 - -0.9 302,227 - -0.5 302,227 - -0.6 302,234 + +0.5 302,234 + -0.0 302,234 + -1.6 302,235 - -0.6 302,235 - -0.8 302,378 + +3.4 302,378 + +0.8 302,378 + +0.1 302,379 - -0.3 302,379 - -0.8 302,379 - +0.3 302,379 - -0.4 302,379 - +0.2 302,379 - -1.3 302,387 + -0.8 302,387 + -0.8 302,387 + +1.3 302,387 + -0.1 302,388 - -0.1 302,388 - -0.1 302,388 - +1.2 302,388 - -0.8
Or see this region's nucleotide sequence