Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3779 and GFF3780 are separated by 54 nucleotides GFF3780 and GFF3781 are separated by 25 nucleotides GFF3781 and GFF3782 are separated by 86 nucleotides GFF3782 and GFF3783 are separated by 15 nucleotides
GFF3779 - hypothetical protein, at 272,149 to 272,706
GFF3779
GFF3780 - hypothetical protein, at 272,761 to 273,234
GFF3780
GFF3781 - Transcriptional regulator, AcrR family, at 273,260 to 273,895
GFF3781
GFF3782 - hypothetical protein, at 273,982 to 274,767
GFF3782
GFF3783 - bifunctional P-450:NADPH-P450 reductase 1, at 274,783 to 278,007
GFF3783
Position (kb) 273
274 Strain fitness (log2 ratio) -1
0
1
2 at 272.496 kb on + strand, within GFF3779 at 272.497 kb on - strand, within GFF3779 at 273.392 kb on + strand, within GFF3781 at 273.392 kb on + strand, within GFF3781 at 273.392 kb on + strand, within GFF3781 at 273.393 kb on - strand, within GFF3781 at 273.393 kb on - strand, within GFF3781 at 273.393 kb on - strand, within GFF3781 at 273.542 kb on + strand, within GFF3781 at 273.542 kb on + strand, within GFF3781 at 273.554 kb on + strand, within GFF3781 at 273.555 kb on - strand, within GFF3781 at 273.555 kb on - strand, within GFF3781 at 273.555 kb on - strand, within GFF3781 at 273.812 kb on + strand, within GFF3781 at 273.812 kb on + strand, within GFF3781 at 273.813 kb on - strand, within GFF3781 at 273.813 kb on - strand, within GFF3781 at 273.836 kb on + strand at 273.837 kb on - strand at 273.837 kb on - strand at 273.837 kb on - strand at 273.860 kb on + strand at 273.860 kb on + strand at 273.860 kb on + strand at 273.860 kb on + strand at 273.860 kb on + strand at 273.861 kb on - strand at 273.861 kb on - strand at 273.861 kb on - strand at 273.870 kb on - strand at 273.884 kb on + strand at 273.884 kb on + strand at 273.884 kb on + strand at 273.885 kb on - strand at 273.885 kb on - strand at 273.885 kb on - strand at 273.885 kb on - strand at 273.893 kb on + strand at 273.894 kb on - strand at 274.192 kb on + strand, within GFF3782 at 274.210 kb on + strand, within GFF3782 at 274.351 kb on + strand, within GFF3782 at 274.352 kb on - strand, within GFF3782 at 274.376 kb on - strand, within GFF3782 at 274.376 kb on - strand, within GFF3782 at 274.376 kb on - strand, within GFF3782 at 274.456 kb on + strand, within GFF3782 at 274.456 kb on + strand, within GFF3782 at 274.457 kb on - strand, within GFF3782 at 274.585 kb on + strand, within GFF3782 at 274.663 kb on + strand, within GFF3782 at 274.664 kb on - strand, within GFF3782 at 274.741 kb on + strand at 274.811 kb on + strand at 274.811 kb on + strand at 274.812 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 272,496 + GFF3779 0.62 -0.0 272,497 - GFF3779 0.62 -0.9 273,392 + GFF3781 0.21 -0.1 273,392 + GFF3781 0.21 +1.0 273,392 + GFF3781 0.21 +0.4 273,393 - GFF3781 0.21 -0.2 273,393 - GFF3781 0.21 -0.4 273,393 - GFF3781 0.21 -0.8 273,542 + GFF3781 0.44 +2.4 273,542 + GFF3781 0.44 -0.8 273,554 + GFF3781 0.46 -0.3 273,555 - GFF3781 0.46 -0.1 273,555 - GFF3781 0.46 -0.3 273,555 - GFF3781 0.46 +0.2 273,812 + GFF3781 0.87 -0.1 273,812 + GFF3781 0.87 -0.1 273,813 - GFF3781 0.87 -1.5 273,813 - GFF3781 0.87 +0.5 273,836 + -0.3 273,837 - -0.2 273,837 - -0.3 273,837 - -1.3 273,860 + +0.1 273,860 + -0.9 273,860 + -1.2 273,860 + -0.7 273,860 + +1.6 273,861 - +1.0 273,861 - -0.6 273,861 - +0.9 273,870 - -0.3 273,884 + -0.8 273,884 + +0.9 273,884 + +1.1 273,885 - -0.4 273,885 - +1.0 273,885 - -0.5 273,885 - +2.0 273,893 + -1.5 273,894 - +0.1 274,192 + GFF3782 0.27 +0.1 274,210 + GFF3782 0.29 +0.1 274,351 + GFF3782 0.47 -0.0 274,352 - GFF3782 0.47 -0.8 274,376 - GFF3782 0.50 -1.0 274,376 - GFF3782 0.50 +0.1 274,376 - GFF3782 0.50 -1.1 274,456 + GFF3782 0.60 +0.7 274,456 + GFF3782 0.60 +0.3 274,457 - GFF3782 0.60 -0.8 274,585 + GFF3782 0.77 -0.0 274,663 + GFF3782 0.87 -0.8 274,664 - GFF3782 0.87 -0.0 274,741 + -0.4 274,811 + -1.1 274,811 + -0.5 274,812 - +0.1
Or see this region's nucleotide sequence