Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF377 and GFF378 are separated by 140 nucleotides GFF378 and GFF379 are separated by 7 nucleotides GFF379 and GFF380 overlap by 11 nucleotides
GFF377 - Carbamoyl-phosphate synthase small chain (EC 6.3.5.5), at 408,978 to 410,177
GFF377
GFF378 - RNA (nucleoside 2'-O)-methyltransferase, at 410,318 to 411,103
GFF378
GFF379 - Ribonuclease HII (EC 3.1.26.4), at 411,111 to 411,821
GFF379
GFF380 - Lipid-A-disaccharide synthase (EC 2.4.1.182), at 411,811 to 412,959
GFF380
Position (kb) 410
411
412 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 410.196 kb on - strand at 410.196 kb on - strand at 410.196 kb on - strand at 410.300 kb on + strand at 410.301 kb on - strand at 410.301 kb on - strand at 410.301 kb on - strand at 410.301 kb on - strand at 410.319 kb on + strand at 410.319 kb on + strand at 410.319 kb on + strand at 410.319 kb on + strand at 410.319 kb on + strand at 410.319 kb on + strand at 410.320 kb on - strand at 410.320 kb on - strand at 410.320 kb on - strand at 410.320 kb on - strand at 410.320 kb on - strand at 410.320 kb on - strand at 410.320 kb on - strand at 410.320 kb on - strand at 410.588 kb on + strand, within GFF378 at 410.588 kb on + strand, within GFF378 at 410.588 kb on + strand, within GFF378 at 410.589 kb on - strand, within GFF378 at 410.589 kb on - strand, within GFF378 at 411.175 kb on - strand at 411.316 kb on + strand, within GFF379 at 411.316 kb on + strand, within GFF379 at 411.316 kb on + strand, within GFF379 at 411.317 kb on - strand, within GFF379 at 411.317 kb on - strand, within GFF379 at 411.546 kb on + strand, within GFF379
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 410,196 - -0.6 410,196 - -0.5 410,196 - -0.8 410,300 + +0.0 410,301 - -0.9 410,301 - -0.9 410,301 - -0.1 410,301 - +0.6 410,319 + -1.4 410,319 + -0.3 410,319 + -1.2 410,319 + -0.1 410,319 + -1.6 410,319 + -0.2 410,320 - -0.5 410,320 - -0.2 410,320 - +0.1 410,320 - -1.9 410,320 - -0.1 410,320 - -0.3 410,320 - +1.4 410,320 - +3.0 410,588 + GFF378 0.34 -0.8 410,588 + GFF378 0.34 -1.0 410,588 + GFF378 0.34 +0.2 410,589 - GFF378 0.34 -0.6 410,589 - GFF378 0.34 -0.3 411,175 - -0.6 411,316 + GFF379 0.29 -0.2 411,316 + GFF379 0.29 -0.4 411,316 + GFF379 0.29 -0.5 411,317 - GFF379 0.29 +0.9 411,317 - GFF379 0.29 +0.0 411,546 + GFF379 0.61 -0.2
Or see this region's nucleotide sequence