Strain Fitness in Variovorax sp. SCN45 around GFF3777

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3775 and GFF3776 are separated by 167 nucleotidesGFF3776 and GFF3777 are separated by 6 nucleotidesGFF3777 and GFF3778 are separated by 200 nucleotides GFF3775 - Two-component transcriptional response regulator, OmpR family, at 266,794 to 267,468 GFF3775 GFF3776 - no description, at 267,636 to 268,025 GFF3776 GFF3777 - Prolyl endopeptidase (EC 3.4.21.26), at 268,032 to 270,083 GFF3777 GFF3778 - Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase, at 270,284 to 271,984 GFF3778 Position (kb) 268 269 270 271Strain fitness (log2 ratio) -2 -1 0 1 2at 267.121 kb on + strand, within GFF3775at 267.121 kb on + strand, within GFF3775at 267.122 kb on - strand, within GFF3775at 267.122 kb on - strand, within GFF3775at 267.176 kb on + strand, within GFF3775at 267.177 kb on - strand, within GFF3775at 267.252 kb on + strand, within GFF3775at 267.253 kb on - strand, within GFF3775at 267.531 kb on + strandat 267.554 kb on - strandat 267.631 kb on + strandat 267.631 kb on + strandat 267.631 kb on + strandat 267.632 kb on - strandat 267.632 kb on - strandat 267.632 kb on - strandat 267.780 kb on + strand, within GFF3776at 267.786 kb on + strand, within GFF3776at 267.786 kb on + strand, within GFF3776at 267.786 kb on + strand, within GFF3776at 267.787 kb on - strand, within GFF3776at 267.787 kb on - strand, within GFF3776at 267.787 kb on - strand, within GFF3776at 267.912 kb on + strand, within GFF3776at 268.055 kb on - strandat 268.055 kb on - strandat 268.055 kb on - strandat 268.055 kb on - strandat 268.055 kb on - strandat 268.055 kb on - strandat 268.060 kb on + strandat 268.060 kb on + strandat 268.061 kb on - strandat 268.061 kb on - strandat 268.061 kb on - strandat 268.132 kb on + strandat 268.267 kb on + strand, within GFF3777at 268.267 kb on + strand, within GFF3777at 268.268 kb on - strand, within GFF3777at 268.268 kb on - strand, within GFF3777at 268.322 kb on - strand, within GFF3777at 268.406 kb on - strand, within GFF3777at 268.417 kb on + strand, within GFF3777at 268.418 kb on - strand, within GFF3777at 268.621 kb on + strand, within GFF3777at 268.621 kb on + strand, within GFF3777at 268.621 kb on + strand, within GFF3777at 268.622 kb on - strand, within GFF3777at 268.622 kb on - strand, within GFF3777at 268.622 kb on - strand, within GFF3777at 268.622 kb on - strand, within GFF3777at 268.622 kb on - strand, within GFF3777at 268.666 kb on + strand, within GFF3777at 268.666 kb on + strand, within GFF3777at 268.667 kb on - strand, within GFF3777at 268.705 kb on + strand, within GFF3777at 268.763 kb on - strand, within GFF3777at 268.885 kb on + strand, within GFF3777at 268.886 kb on - strand, within GFF3777at 268.927 kb on + strand, within GFF3777at 268.928 kb on - strand, within GFF3777at 268.928 kb on - strand, within GFF3777at 268.928 kb on - strand, within GFF3777at 269.170 kb on + strand, within GFF3777at 269.170 kb on + strand, within GFF3777at 269.170 kb on + strand, within GFF3777at 269.170 kb on + strand, within GFF3777at 269.171 kb on - strand, within GFF3777at 269.171 kb on - strand, within GFF3777at 269.171 kb on - strand, within GFF3777at 269.171 kb on - strand, within GFF3777at 269.171 kb on - strand, within GFF3777at 269.171 kb on - strand, within GFF3777at 269.171 kb on - strand, within GFF3777at 269.209 kb on + strand, within GFF3777at 269.209 kb on + strand, within GFF3777at 269.210 kb on - strand, within GFF3777at 269.210 kb on - strand, within GFF3777at 269.440 kb on + strand, within GFF3777at 269.440 kb on + strand, within GFF3777at 269.545 kb on + strand, within GFF3777at 269.546 kb on - strand, within GFF3777at 269.546 kb on - strand, within GFF3777at 269.695 kb on + strand, within GFF3777at 269.804 kb on - strand, within GFF3777at 269.867 kb on - strand, within GFF3777at 269.867 kb on - strand, within GFF3777at 269.969 kb on - strandat 269.969 kb on - strandat 269.969 kb on - strandat 270.095 kb on - strandat 270.210 kb on - strandat 270.386 kb on + strandat 270.387 kb on - strandat 270.401 kb on + strandat 270.402 kb on - strandat 270.530 kb on + strand, within GFF3778at 270.530 kb on + strand, within GFF3778at 270.530 kb on + strand, within GFF3778at 270.587 kb on + strand, within GFF3778at 270.587 kb on + strand, within GFF3778at 270.587 kb on + strand, within GFF3778at 270.587 kb on + strand, within GFF3778at 270.588 kb on - strand, within GFF3778at 270.588 kb on - strand, within GFF3778at 270.588 kb on - strand, within GFF3778at 270.588 kb on - strand, within GFF3778at 270.588 kb on - strand, within GFF3778at 270.588 kb on - strand, within GFF3778at 270.588 kb on - strand, within GFF3778at 270.683 kb on + strand, within GFF3778at 270.683 kb on + strand, within GFF3778at 270.810 kb on - strand, within GFF3778at 270.867 kb on - strand, within GFF3778at 270.867 kb on - strand, within GFF3778at 271.067 kb on + strand, within GFF3778at 271.067 kb on + strand, within GFF3778at 271.067 kb on + strand, within GFF3778at 271.067 kb on + strand, within GFF3778at 271.067 kb on + strand, within GFF3778at 271.067 kb on + strand, within GFF3778at 271.067 kb on + strand, within GFF3778at 271.068 kb on - strand, within GFF3778at 271.068 kb on - strand, within GFF3778at 271.068 kb on - strand, within GFF3778

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
267,121 + GFF3775 0.48 -0.8
267,121 + GFF3775 0.48 +1.1
267,122 - GFF3775 0.49 +0.2
267,122 - GFF3775 0.49 -0.0
267,176 + GFF3775 0.57 +0.6
267,177 - GFF3775 0.57 -0.2
267,252 + GFF3775 0.68 -0.4
267,253 - GFF3775 0.68 +0.2
267,531 + +0.9
267,554 - -0.0
267,631 + +0.4
267,631 + -0.0
267,631 + -1.5
267,632 - +0.6
267,632 - -0.2
267,632 - -0.9
267,780 + GFF3776 0.37 -0.8
267,786 + GFF3776 0.38 -1.2
267,786 + GFF3776 0.38 -0.0
267,786 + GFF3776 0.38 +0.1
267,787 - GFF3776 0.39 +0.2
267,787 - GFF3776 0.39 -1.0
267,787 - GFF3776 0.39 -0.7
267,912 + GFF3776 0.71 +0.5
268,055 - -0.0
268,055 - -1.5
268,055 - -1.0
268,055 - -0.3
268,055 - -1.0
268,055 - +0.1
268,060 + -1.0
268,060 + -0.4
268,061 - -0.4
268,061 - -0.0
268,061 - -0.0
268,132 + -1.3
268,267 + GFF3777 0.11 -0.0
268,267 + GFF3777 0.11 +0.4
268,268 - GFF3777 0.12 +0.5
268,268 - GFF3777 0.12 +0.4
268,322 - GFF3777 0.14 -0.5
268,406 - GFF3777 0.18 -0.2
268,417 + GFF3777 0.19 -0.3
268,418 - GFF3777 0.19 +1.3
268,621 + GFF3777 0.29 +0.0
268,621 + GFF3777 0.29 +0.4
268,621 + GFF3777 0.29 -0.4
268,622 - GFF3777 0.29 -1.8
268,622 - GFF3777 0.29 -0.1
268,622 - GFF3777 0.29 -0.6
268,622 - GFF3777 0.29 -1.9
268,622 - GFF3777 0.29 -0.2
268,666 + GFF3777 0.31 -0.2
268,666 + GFF3777 0.31 -0.8
268,667 - GFF3777 0.31 +0.8
268,705 + GFF3777 0.33 -1.7
268,763 - GFF3777 0.36 -0.2
268,885 + GFF3777 0.42 -0.3
268,886 - GFF3777 0.42 +1.2
268,927 + GFF3777 0.44 -1.5
268,928 - GFF3777 0.44 +0.2
268,928 - GFF3777 0.44 -0.6
268,928 - GFF3777 0.44 -0.0
269,170 + GFF3777 0.55 -0.8
269,170 + GFF3777 0.55 +0.5
269,170 + GFF3777 0.55 -0.8
269,170 + GFF3777 0.55 -0.0
269,171 - GFF3777 0.56 -0.6
269,171 - GFF3777 0.56 +1.0
269,171 - GFF3777 0.56 -0.0
269,171 - GFF3777 0.56 +0.0
269,171 - GFF3777 0.56 -0.1
269,171 - GFF3777 0.56 +0.4
269,171 - GFF3777 0.56 +0.2
269,209 + GFF3777 0.57 -0.7
269,209 + GFF3777 0.57 +1.2
269,210 - GFF3777 0.57 +0.0
269,210 - GFF3777 0.57 +0.1
269,440 + GFF3777 0.69 -0.1
269,440 + GFF3777 0.69 -0.4
269,545 + GFF3777 0.74 +1.2
269,546 - GFF3777 0.74 +1.0
269,546 - GFF3777 0.74 -0.0
269,695 + GFF3777 0.81 +0.6
269,804 - GFF3777 0.86 -0.2
269,867 - GFF3777 0.89 +0.5
269,867 - GFF3777 0.89 -0.3
269,969 - +1.4
269,969 - +0.3
269,969 - -0.1
270,095 - -0.0
270,210 - +2.0
270,386 + +0.2
270,387 - -0.2
270,401 + -0.1
270,402 - +0.4
270,530 + GFF3778 0.14 -0.7
270,530 + GFF3778 0.14 -0.3
270,530 + GFF3778 0.14 -0.1
270,587 + GFF3778 0.18 +0.7
270,587 + GFF3778 0.18 -0.4
270,587 + GFF3778 0.18 -0.1
270,587 + GFF3778 0.18 -0.8
270,588 - GFF3778 0.18 -0.6
270,588 - GFF3778 0.18 +0.1
270,588 - GFF3778 0.18 -1.0
270,588 - GFF3778 0.18 -0.0
270,588 - GFF3778 0.18 +0.4
270,588 - GFF3778 0.18 -0.6
270,588 - GFF3778 0.18 +0.2
270,683 + GFF3778 0.23 -0.5
270,683 + GFF3778 0.23 -0.6
270,810 - GFF3778 0.31 -1.3
270,867 - GFF3778 0.34 -0.2
270,867 - GFF3778 0.34 +0.2
271,067 + GFF3778 0.46 +0.3
271,067 + GFF3778 0.46 -0.5
271,067 + GFF3778 0.46 -0.2
271,067 + GFF3778 0.46 -0.1
271,067 + GFF3778 0.46 +0.7
271,067 + GFF3778 0.46 +0.2
271,067 + GFF3778 0.46 +0.7
271,068 - GFF3778 0.46 +1.0
271,068 - GFF3778 0.46 -1.1
271,068 - GFF3778 0.46 -0.3

Or see this region's nucleotide sequence