Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3692 and GFF3693 are separated by 1 nucleotides GFF3693 and GFF3694 are separated by 25 nucleotides GFF3694 and GFF3695 are separated by 81 nucleotides
GFF3692 - ABC transporter, substrate-binding protein (cluster 2, ribose/xylose/arabinose/galactose), at 191,731 to 192,693
GFF3692
GFF3693 - Oxidoreductase, at 192,695 to 193,858
GFF3693
GFF3694 - Phosphoesterase, PA-phosphatase related, at 193,884 to 194,597
GFF3694
GFF3695 - hypothetical protein, at 194,679 to 195,197
GFF3695
Position (kb) 192
193
194 Strain fitness (log2 ratio) -2
-1
0
1 at 191.873 kb on - strand, within GFF3692 at 191.873 kb on - strand, within GFF3692 at 192.077 kb on - strand, within GFF3692 at 192.077 kb on - strand, within GFF3692 at 192.127 kb on + strand, within GFF3692 at 192.127 kb on + strand, within GFF3692 at 192.127 kb on + strand, within GFF3692 at 192.128 kb on - strand, within GFF3692 at 192.128 kb on - strand, within GFF3692 at 192.172 kb on + strand, within GFF3692 at 192.173 kb on - strand, within GFF3692 at 192.173 kb on - strand, within GFF3692 at 192.173 kb on - strand, within GFF3692 at 192.173 kb on - strand, within GFF3692 at 192.310 kb on + strand, within GFF3692 at 192.310 kb on + strand, within GFF3692 at 192.311 kb on - strand, within GFF3692 at 192.311 kb on - strand, within GFF3692 at 192.311 kb on - strand, within GFF3692 at 192.356 kb on - strand, within GFF3692 at 192.544 kb on + strand, within GFF3692 at 192.544 kb on + strand, within GFF3692 at 192.545 kb on - strand, within GFF3692 at 192.563 kb on - strand, within GFF3692 at 192.563 kb on - strand, within GFF3692 at 192.670 kb on + strand at 192.671 kb on - strand at 192.671 kb on - strand at 192.671 kb on - strand at 192.671 kb on - strand at 192.671 kb on - strand at 193.115 kb on + strand, within GFF3693 at 193.115 kb on + strand, within GFF3693 at 193.116 kb on - strand, within GFF3693 at 193.116 kb on - strand, within GFF3693 at 193.121 kb on + strand, within GFF3693 at 193.121 kb on + strand, within GFF3693 at 193.121 kb on + strand, within GFF3693 at 193.122 kb on - strand, within GFF3693 at 193.122 kb on - strand, within GFF3693 at 193.205 kb on + strand, within GFF3693 at 193.206 kb on - strand, within GFF3693 at 193.206 kb on - strand, within GFF3693 at 193.359 kb on + strand, within GFF3693 at 193.359 kb on + strand, within GFF3693 at 193.359 kb on + strand, within GFF3693 at 193.359 kb on + strand, within GFF3693 at 193.360 kb on - strand, within GFF3693 at 193.360 kb on - strand, within GFF3693 at 193.697 kb on + strand, within GFF3693 at 193.698 kb on - strand, within GFF3693 at 193.766 kb on + strand at 194.034 kb on + strand, within GFF3694 at 194.034 kb on + strand, within GFF3694 at 194.035 kb on - strand, within GFF3694 at 194.035 kb on - strand, within GFF3694 at 194.035 kb on - strand, within GFF3694 at 194.035 kb on - strand, within GFF3694 at 194.130 kb on + strand, within GFF3694 at 194.130 kb on + strand, within GFF3694 at 194.131 kb on - strand, within GFF3694 at 194.148 kb on + strand, within GFF3694 at 194.149 kb on - strand, within GFF3694 at 194.467 kb on - strand, within GFF3694 at 194.596 kb on - strand at 194.609 kb on + strand at 194.634 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 191,873 - GFF3692 0.15 -0.4 191,873 - GFF3692 0.15 -0.6 192,077 - GFF3692 0.36 -0.5 192,077 - GFF3692 0.36 +0.3 192,127 + GFF3692 0.41 +0.0 192,127 + GFF3692 0.41 -0.3 192,127 + GFF3692 0.41 +0.5 192,128 - GFF3692 0.41 +0.3 192,128 - GFF3692 0.41 -0.8 192,172 + GFF3692 0.46 +1.4 192,173 - GFF3692 0.46 -2.3 192,173 - GFF3692 0.46 -1.1 192,173 - GFF3692 0.46 +0.4 192,173 - GFF3692 0.46 -0.5 192,310 + GFF3692 0.60 -0.1 192,310 + GFF3692 0.60 -0.6 192,311 - GFF3692 0.60 -0.5 192,311 - GFF3692 0.60 -0.8 192,311 - GFF3692 0.60 +0.8 192,356 - GFF3692 0.65 -0.3 192,544 + GFF3692 0.84 -0.2 192,544 + GFF3692 0.84 -0.1 192,545 - GFF3692 0.85 -0.7 192,563 - GFF3692 0.86 -0.3 192,563 - GFF3692 0.86 +0.6 192,670 + +0.4 192,671 - -1.5 192,671 - -0.9 192,671 - -0.6 192,671 - -0.3 192,671 - -0.4 193,115 + GFF3693 0.36 +0.4 193,115 + GFF3693 0.36 +0.5 193,116 - GFF3693 0.36 -0.1 193,116 - GFF3693 0.36 -1.4 193,121 + GFF3693 0.37 -0.7 193,121 + GFF3693 0.37 -1.2 193,121 + GFF3693 0.37 +0.1 193,122 - GFF3693 0.37 -0.3 193,122 - GFF3693 0.37 +0.5 193,205 + GFF3693 0.44 +0.2 193,206 - GFF3693 0.44 -0.7 193,206 - GFF3693 0.44 +1.3 193,359 + GFF3693 0.57 -0.7 193,359 + GFF3693 0.57 -1.4 193,359 + GFF3693 0.57 -0.8 193,359 + GFF3693 0.57 -0.7 193,360 - GFF3693 0.57 +0.2 193,360 - GFF3693 0.57 +0.4 193,697 + GFF3693 0.86 +0.2 193,698 - GFF3693 0.86 -0.6 193,766 + +0.0 194,034 + GFF3694 0.21 +0.8 194,034 + GFF3694 0.21 -0.5 194,035 - GFF3694 0.21 -0.1 194,035 - GFF3694 0.21 -0.0 194,035 - GFF3694 0.21 -0.4 194,035 - GFF3694 0.21 +0.1 194,130 + GFF3694 0.34 -1.1 194,130 + GFF3694 0.34 +0.4 194,131 - GFF3694 0.35 -0.6 194,148 + GFF3694 0.37 +0.6 194,149 - GFF3694 0.37 -1.2 194,467 - GFF3694 0.82 -0.3 194,596 - -0.5 194,609 + -0.8 194,634 + -1.9
Or see this region's nucleotide sequence