Strain Fitness in Variovorax sp. SCN45 around GFF3672

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3671 and GFF3672 are separated by 194 nucleotidesGFF3672 and GFF3673 are separated by 15 nucleotidesGFF3673 and GFF3674 are separated by 21 nucleotides GFF3671 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 173,177 to 174,709 GFF3671 GFF3672 - no description, at 174,904 to 175,146 GFF3672 GFF3673 - no description, at 175,162 to 175,656 GFF3673 GFF3674 - Lipoyl synthase (EC 2.8.1.8), at 175,678 to 176,679 GFF3674 Position (kb) 174 175 176Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 173.943 kb on + strand, within GFF3671at 173.943 kb on + strand, within GFF3671at 173.944 kb on - strand, within GFF3671at 173.944 kb on - strand, within GFF3671at 174.000 kb on + strand, within GFF3671at 174.000 kb on + strand, within GFF3671at 174.001 kb on - strand, within GFF3671at 174.001 kb on - strand, within GFF3671at 174.087 kb on + strand, within GFF3671at 174.087 kb on + strand, within GFF3671at 174.087 kb on + strand, within GFF3671at 174.126 kb on + strand, within GFF3671at 174.126 kb on + strand, within GFF3671at 174.126 kb on + strand, within GFF3671at 174.126 kb on + strand, within GFF3671at 174.126 kb on + strand, within GFF3671at 174.126 kb on + strand, within GFF3671at 174.127 kb on - strand, within GFF3671at 174.127 kb on - strand, within GFF3671at 174.127 kb on - strand, within GFF3671at 174.127 kb on - strand, within GFF3671at 174.127 kb on - strand, within GFF3671at 174.127 kb on - strand, within GFF3671at 174.127 kb on - strand, within GFF3671at 174.132 kb on + strand, within GFF3671at 174.132 kb on + strand, within GFF3671at 174.132 kb on + strand, within GFF3671at 174.132 kb on + strand, within GFF3671at 174.132 kb on + strand, within GFF3671at 174.133 kb on - strand, within GFF3671at 174.133 kb on - strand, within GFF3671at 174.133 kb on - strand, within GFF3671at 174.133 kb on - strand, within GFF3671at 174.133 kb on - strand, within GFF3671at 174.133 kb on - strand, within GFF3671at 174.216 kb on + strand, within GFF3671at 174.216 kb on + strand, within GFF3671at 174.216 kb on + strand, within GFF3671at 174.217 kb on - strand, within GFF3671at 174.217 kb on - strand, within GFF3671at 174.217 kb on - strand, within GFF3671at 174.217 kb on - strand, within GFF3671at 174.217 kb on - strand, within GFF3671at 174.217 kb on - strand, within GFF3671at 174.504 kb on + strand, within GFF3671at 174.504 kb on + strand, within GFF3671at 174.504 kb on + strand, within GFF3671at 174.504 kb on + strand, within GFF3671at 174.504 kb on + strand, within GFF3671at 174.504 kb on + strand, within GFF3671at 174.504 kb on + strand, within GFF3671at 174.504 kb on + strand, within GFF3671at 174.504 kb on + strand, within GFF3671at 174.504 kb on + strand, within GFF3671at 174.504 kb on + strand, within GFF3671at 174.504 kb on + strand, within GFF3671at 174.504 kb on + strand, within GFF3671at 174.505 kb on - strand, within GFF3671at 174.505 kb on - strand, within GFF3671at 174.505 kb on - strand, within GFF3671at 174.505 kb on - strand, within GFF3671at 174.505 kb on - strand, within GFF3671at 174.505 kb on - strand, within GFF3671at 174.505 kb on - strand, within GFF3671at 174.505 kb on - strand, within GFF3671at 174.505 kb on - strand, within GFF3671at 174.505 kb on - strand, within GFF3671at 174.505 kb on - strand, within GFF3671at 174.505 kb on - strand, within GFF3671at 174.609 kb on + strandat 175.036 kb on + strand, within GFF3672at 175.036 kb on + strand, within GFF3672at 175.036 kb on + strand, within GFF3672at 175.036 kb on + strand, within GFF3672at 175.036 kb on + strand, within GFF3672at 175.036 kb on + strand, within GFF3672at 175.036 kb on + strand, within GFF3672at 175.036 kb on + strand, within GFF3672at 175.036 kb on + strand, within GFF3672at 175.036 kb on + strand, within GFF3672at 175.036 kb on + strand, within GFF3672at 175.036 kb on + strand, within GFF3672at 175.036 kb on + strand, within GFF3672at 175.037 kb on - strand, within GFF3672at 175.037 kb on - strand, within GFF3672at 175.037 kb on - strand, within GFF3672at 175.037 kb on - strand, within GFF3672at 175.037 kb on - strand, within GFF3672at 175.037 kb on - strand, within GFF3672at 175.037 kb on - strand, within GFF3672at 175.037 kb on - strand, within GFF3672at 175.037 kb on - strand, within GFF3672at 175.037 kb on - strand, within GFF3672at 175.037 kb on - strand, within GFF3672at 175.037 kb on - strand, within GFF3672at 175.037 kb on - strand, within GFF3672at 175.037 kb on - strand, within GFF3672at 175.037 kb on - strand, within GFF3672at 175.037 kb on - strand, within GFF3672at 175.037 kb on - strand, within GFF3672at 175.037 kb on - strand, within GFF3672at 175.037 kb on - strand, within GFF3672at 175.037 kb on - strand, within GFF3672at 175.037 kb on - strand, within GFF3672at 175.037 kb on - strand, within GFF3672at 175.060 kb on + strand, within GFF3672at 175.060 kb on + strand, within GFF3672at 175.060 kb on + strand, within GFF3672at 175.060 kb on + strand, within GFF3672at 175.060 kb on + strand, within GFF3672at 175.060 kb on + strand, within GFF3672at 175.061 kb on - strand, within GFF3672at 175.061 kb on - strand, within GFF3672at 175.061 kb on - strand, within GFF3672at 175.169 kb on + strandat 175.169 kb on + strandat 175.169 kb on + strandat 175.170 kb on - strandat 175.170 kb on - strandat 175.170 kb on - strandat 175.170 kb on - strandat 175.170 kb on - strandat 175.170 kb on - strandat 175.170 kb on - strandat 175.170 kb on - strandat 175.564 kb on + strand, within GFF3673at 175.564 kb on + strand, within GFF3673at 175.564 kb on + strand, within GFF3673at 175.564 kb on + strand, within GFF3673at 175.564 kb on + strand, within GFF3673at 175.564 kb on + strand, within GFF3673at 175.564 kb on + strand, within GFF3673at 175.564 kb on + strand, within GFF3673at 175.565 kb on - strand, within GFF3673at 175.565 kb on - strand, within GFF3673at 175.565 kb on - strand, within GFF3673at 175.565 kb on - strand, within GFF3673at 175.565 kb on - strand, within GFF3673at 175.565 kb on - strand, within GFF3673at 175.565 kb on - strand, within GFF3673

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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173,943 + GFF3671 0.50 -0.6
173,943 + GFF3671 0.50 +1.4
173,944 - GFF3671 0.50 -0.5
173,944 - GFF3671 0.50 -0.2
174,000 + GFF3671 0.54 +1.4
174,000 + GFF3671 0.54 +1.7
174,001 - GFF3671 0.54 +1.3
174,001 - GFF3671 0.54 +0.1
174,087 + GFF3671 0.59 -0.6
174,087 + GFF3671 0.59 -0.3
174,087 + GFF3671 0.59 -0.5
174,126 + GFF3671 0.62 +1.6
174,126 + GFF3671 0.62 +1.0
174,126 + GFF3671 0.62 +0.1
174,126 + GFF3671 0.62 -1.1
174,126 + GFF3671 0.62 +1.2
174,126 + GFF3671 0.62 +0.2
174,127 - GFF3671 0.62 -0.1
174,127 - GFF3671 0.62 +0.2
174,127 - GFF3671 0.62 -0.1
174,127 - GFF3671 0.62 +4.4
174,127 - GFF3671 0.62 -2.3
174,127 - GFF3671 0.62 +0.0
174,127 - GFF3671 0.62 -0.3
174,132 + GFF3671 0.62 +0.1
174,132 + GFF3671 0.62 -0.8
174,132 + GFF3671 0.62 -0.9
174,132 + GFF3671 0.62 +0.2
174,132 + GFF3671 0.62 +0.1
174,133 - GFF3671 0.62 +1.3
174,133 - GFF3671 0.62 +2.0
174,133 - GFF3671 0.62 +1.1
174,133 - GFF3671 0.62 -0.8
174,133 - GFF3671 0.62 -0.8
174,133 - GFF3671 0.62 -0.8
174,216 + GFF3671 0.68 -0.6
174,216 + GFF3671 0.68 +1.2
174,216 + GFF3671 0.68 +0.5
174,217 - GFF3671 0.68 -0.5
174,217 - GFF3671 0.68 +0.3
174,217 - GFF3671 0.68 -0.8
174,217 - GFF3671 0.68 -0.1
174,217 - GFF3671 0.68 -0.2
174,217 - GFF3671 0.68 -0.9
174,504 + GFF3671 0.87 -0.3
174,504 + GFF3671 0.87 +0.3
174,504 + GFF3671 0.87 -0.6
174,504 + GFF3671 0.87 -0.0
174,504 + GFF3671 0.87 -0.8
174,504 + GFF3671 0.87 -0.2
174,504 + GFF3671 0.87 -0.2
174,504 + GFF3671 0.87 +0.5
174,504 + GFF3671 0.87 +0.4
174,504 + GFF3671 0.87 -0.2
174,504 + GFF3671 0.87 -2.1
174,504 + GFF3671 0.87 +0.3
174,504 + GFF3671 0.87 -0.3
174,505 - GFF3671 0.87 -0.0
174,505 - GFF3671 0.87 -0.6
174,505 - GFF3671 0.87 -1.4
174,505 - GFF3671 0.87 -0.2
174,505 - GFF3671 0.87 +0.2
174,505 - GFF3671 0.87 +0.2
174,505 - GFF3671 0.87 +0.2
174,505 - GFF3671 0.87 -0.3
174,505 - GFF3671 0.87 -0.5
174,505 - GFF3671 0.87 +0.0
174,505 - GFF3671 0.87 -0.1
174,505 - GFF3671 0.87 -0.5
174,609 + -0.5
175,036 + GFF3672 0.54 +0.2
175,036 + GFF3672 0.54 -0.1
175,036 + GFF3672 0.54 +0.8
175,036 + GFF3672 0.54 +0.1
175,036 + GFF3672 0.54 -0.1
175,036 + GFF3672 0.54 +0.3
175,036 + GFF3672 0.54 -0.2
175,036 + GFF3672 0.54 -0.9
175,036 + GFF3672 0.54 -0.2
175,036 + GFF3672 0.54 -0.3
175,036 + GFF3672 0.54 -0.1
175,036 + GFF3672 0.54 -1.3
175,036 + GFF3672 0.54 -0.6
175,037 - GFF3672 0.55 +1.6
175,037 - GFF3672 0.55 -1.1
175,037 - GFF3672 0.55 -0.8
175,037 - GFF3672 0.55 +0.4
175,037 - GFF3672 0.55 +0.2
175,037 - GFF3672 0.55 -0.7
175,037 - GFF3672 0.55 -3.0
175,037 - GFF3672 0.55 +0.7
175,037 - GFF3672 0.55 -0.0
175,037 - GFF3672 0.55 -0.4
175,037 - GFF3672 0.55 +0.2
175,037 - GFF3672 0.55 -0.4
175,037 - GFF3672 0.55 +1.0
175,037 - GFF3672 0.55 -1.5
175,037 - GFF3672 0.55 +0.0
175,037 - GFF3672 0.55 -0.7
175,037 - GFF3672 0.55 +0.6
175,037 - GFF3672 0.55 +0.2
175,037 - GFF3672 0.55 +0.6
175,037 - GFF3672 0.55 -0.5
175,037 - GFF3672 0.55 -0.8
175,037 - GFF3672 0.55 -0.6
175,060 + GFF3672 0.64 +0.6
175,060 + GFF3672 0.64 -1.2
175,060 + GFF3672 0.64 +0.5
175,060 + GFF3672 0.64 -2.2
175,060 + GFF3672 0.64 +0.3
175,060 + GFF3672 0.64 -2.4
175,061 - GFF3672 0.65 -0.7
175,061 - GFF3672 0.65 -0.8
175,061 - GFF3672 0.65 -0.4
175,169 + -1.3
175,169 + -0.7
175,169 + -2.0
175,170 - -0.1
175,170 - +0.5
175,170 - -0.2
175,170 - -0.1
175,170 - +0.4
175,170 - -0.4
175,170 - -0.1
175,170 - -0.1
175,564 + GFF3673 0.81 +0.6
175,564 + GFF3673 0.81 -0.9
175,564 + GFF3673 0.81 +0.8
175,564 + GFF3673 0.81 -0.2
175,564 + GFF3673 0.81 +0.7
175,564 + GFF3673 0.81 -0.4
175,564 + GFF3673 0.81 +0.6
175,564 + GFF3673 0.81 -0.7
175,565 - GFF3673 0.81 -0.7
175,565 - GFF3673 0.81 -0.9
175,565 - GFF3673 0.81 +0.5
175,565 - GFF3673 0.81 +0.1
175,565 - GFF3673 0.81 +2.0
175,565 - GFF3673 0.81 -0.1
175,565 - GFF3673 0.81 -0.2

Or see this region's nucleotide sequence