Strain Fitness in Variovorax sp. SCN45 around GFF3671

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3670 and GFF3671 are separated by 37 nucleotidesGFF3671 and GFF3672 are separated by 194 nucleotidesGFF3672 and GFF3673 are separated by 15 nucleotidesGFF3673 and GFF3674 are separated by 21 nucleotides GFF3670 - Two-component system sensor histidine kinase, at 171,679 to 173,139 GFF3670 GFF3671 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 173,177 to 174,709 GFF3671 GFF3672 - no description, at 174,904 to 175,146 GFF3672 GFF3673 - no description, at 175,162 to 175,656 GFF3673 GFF3674 - Lipoyl synthase (EC 2.8.1.8), at 175,678 to 176,679 GFF3674 Position (kb) 173 174 175Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 172.398 kb on - strand, within GFF3670at 172.398 kb on - strand, within GFF3670at 172.823 kb on + strand, within GFF3670at 172.823 kb on + strand, within GFF3670at 172.823 kb on + strand, within GFF3670at 172.823 kb on + strand, within GFF3670at 172.823 kb on + strand, within GFF3670at 172.823 kb on + strand, within GFF3670at 172.823 kb on + strand, within GFF3670at 172.823 kb on + strand, within GFF3670at 172.823 kb on + strand, within GFF3670at 172.823 kb on + strand, within GFF3670at 172.824 kb on - strand, within GFF3670at 172.824 kb on - strand, within GFF3670at 172.824 kb on - strand, within GFF3670at 172.824 kb on - strand, within GFF3670at 172.824 kb on - strand, within GFF3670at 172.824 kb on - strand, within GFF3670at 172.824 kb on - strand, within GFF3670at 172.832 kb on + strand, within GFF3670at 172.833 kb on - strand, within GFF3670at 172.833 kb on - strand, within GFF3670at 172.838 kb on + strand, within GFF3670at 172.838 kb on + strand, within GFF3670at 172.838 kb on + strand, within GFF3670at 172.838 kb on + strand, within GFF3670at 172.838 kb on + strand, within GFF3670at 172.838 kb on + strand, within GFF3670at 172.838 kb on + strand, within GFF3670at 172.839 kb on - strand, within GFF3670at 172.839 kb on - strand, within GFF3670at 172.839 kb on - strand, within GFF3670at 172.839 kb on - strand, within GFF3670at 172.839 kb on - strand, within GFF3670at 172.839 kb on - strand, within GFF3670at 172.973 kb on + strand, within GFF3670at 172.973 kb on + strand, within GFF3670at 173.051 kb on + strandat 173.051 kb on + strandat 173.451 kb on + strand, within GFF3671at 173.451 kb on + strand, within GFF3671at 173.451 kb on + strand, within GFF3671at 173.451 kb on + strand, within GFF3671at 173.452 kb on - strand, within GFF3671at 173.452 kb on - strand, within GFF3671at 173.452 kb on - strand, within GFF3671at 173.452 kb on - strand, within GFF3671at 173.452 kb on - strand, within GFF3671at 173.610 kb on + strand, within GFF3671at 173.611 kb on - strand, within GFF3671at 173.802 kb on + strand, within GFF3671at 173.803 kb on - strand, within GFF3671at 173.943 kb on + strand, within GFF3671at 173.943 kb on + strand, within GFF3671at 173.944 kb on - strand, within GFF3671at 173.944 kb on - strand, within GFF3671at 174.000 kb on + strand, within GFF3671at 174.000 kb on + strand, within GFF3671at 174.001 kb on - strand, within GFF3671at 174.001 kb on - strand, within GFF3671at 174.087 kb on + strand, within GFF3671at 174.087 kb on + strand, within GFF3671at 174.087 kb on + strand, within GFF3671at 174.126 kb on + strand, within GFF3671at 174.126 kb on + strand, within GFF3671at 174.126 kb on + strand, within GFF3671at 174.126 kb on + strand, within GFF3671at 174.126 kb on + strand, within GFF3671at 174.126 kb on + strand, within GFF3671at 174.127 kb on - strand, within GFF3671at 174.127 kb on - strand, within GFF3671at 174.127 kb on - strand, within GFF3671at 174.127 kb on - strand, within GFF3671at 174.127 kb on - strand, within GFF3671at 174.127 kb on - strand, within GFF3671at 174.127 kb on - strand, within GFF3671at 174.132 kb on + strand, within GFF3671at 174.132 kb on + strand, within GFF3671at 174.132 kb on + strand, within GFF3671at 174.132 kb on + strand, within GFF3671at 174.132 kb on + strand, within GFF3671at 174.133 kb on - strand, within GFF3671at 174.133 kb on - strand, within GFF3671at 174.133 kb on - strand, within GFF3671at 174.133 kb on - strand, within GFF3671at 174.133 kb on - strand, within GFF3671at 174.133 kb on - strand, within GFF3671at 174.216 kb on + strand, within GFF3671at 174.216 kb on + strand, within GFF3671at 174.216 kb on + strand, within GFF3671at 174.217 kb on - strand, within GFF3671at 174.217 kb on - strand, within GFF3671at 174.217 kb on - strand, within GFF3671at 174.217 kb on - strand, within GFF3671at 174.217 kb on - strand, within GFF3671at 174.217 kb on - strand, within GFF3671at 174.504 kb on + strand, within GFF3671at 174.504 kb on + strand, within GFF3671at 174.504 kb on + strand, within GFF3671at 174.504 kb on + strand, within GFF3671at 174.504 kb on + strand, within GFF3671at 174.504 kb on + strand, within GFF3671at 174.504 kb on + strand, within GFF3671at 174.504 kb on + strand, within GFF3671at 174.504 kb on + strand, within GFF3671at 174.504 kb on + strand, within GFF3671at 174.504 kb on + strand, within GFF3671at 174.504 kb on + strand, within GFF3671at 174.504 kb on + strand, within GFF3671at 174.505 kb on - strand, within GFF3671at 174.505 kb on - strand, within GFF3671at 174.505 kb on - strand, within GFF3671at 174.505 kb on - strand, within GFF3671at 174.505 kb on - strand, within GFF3671at 174.505 kb on - strand, within GFF3671at 174.505 kb on - strand, within GFF3671at 174.505 kb on - strand, within GFF3671at 174.505 kb on - strand, within GFF3671at 174.505 kb on - strand, within GFF3671at 174.505 kb on - strand, within GFF3671at 174.505 kb on - strand, within GFF3671at 174.609 kb on + strandat 175.036 kb on + strand, within GFF3672at 175.036 kb on + strand, within GFF3672at 175.036 kb on + strand, within GFF3672at 175.036 kb on + strand, within GFF3672at 175.036 kb on + strand, within GFF3672at 175.036 kb on + strand, within GFF3672at 175.036 kb on + strand, within GFF3672at 175.036 kb on + strand, within GFF3672at 175.036 kb on + strand, within GFF3672at 175.036 kb on + strand, within GFF3672at 175.036 kb on + strand, within GFF3672at 175.036 kb on + strand, within GFF3672at 175.036 kb on + strand, within GFF3672at 175.037 kb on - strand, within GFF3672at 175.037 kb on - strand, within GFF3672at 175.037 kb on - strand, within GFF3672at 175.037 kb on - strand, within GFF3672at 175.037 kb on - strand, within GFF3672at 175.037 kb on - strand, within GFF3672at 175.037 kb on - strand, within GFF3672at 175.037 kb on - strand, within GFF3672at 175.037 kb on - strand, within GFF3672at 175.037 kb on - strand, within GFF3672at 175.037 kb on - strand, within GFF3672at 175.037 kb on - strand, within GFF3672at 175.037 kb on - strand, within GFF3672at 175.037 kb on - strand, within GFF3672at 175.037 kb on - strand, within GFF3672at 175.037 kb on - strand, within GFF3672at 175.037 kb on - strand, within GFF3672at 175.037 kb on - strand, within GFF3672at 175.037 kb on - strand, within GFF3672at 175.037 kb on - strand, within GFF3672at 175.037 kb on - strand, within GFF3672at 175.037 kb on - strand, within GFF3672at 175.060 kb on + strand, within GFF3672at 175.060 kb on + strand, within GFF3672at 175.060 kb on + strand, within GFF3672at 175.060 kb on + strand, within GFF3672at 175.060 kb on + strand, within GFF3672at 175.060 kb on + strand, within GFF3672at 175.061 kb on - strand, within GFF3672at 175.061 kb on - strand, within GFF3672at 175.061 kb on - strand, within GFF3672at 175.169 kb on + strandat 175.169 kb on + strandat 175.169 kb on + strandat 175.170 kb on - strandat 175.170 kb on - strandat 175.170 kb on - strandat 175.170 kb on - strandat 175.170 kb on - strandat 175.170 kb on - strandat 175.170 kb on - strandat 175.170 kb on - strandat 175.564 kb on + strand, within GFF3673at 175.564 kb on + strand, within GFF3673at 175.564 kb on + strand, within GFF3673at 175.564 kb on + strand, within GFF3673at 175.564 kb on + strand, within GFF3673at 175.564 kb on + strand, within GFF3673at 175.564 kb on + strand, within GFF3673at 175.564 kb on + strand, within GFF3673at 175.565 kb on - strand, within GFF3673at 175.565 kb on - strand, within GFF3673at 175.565 kb on - strand, within GFF3673at 175.565 kb on - strand, within GFF3673at 175.565 kb on - strand, within GFF3673at 175.565 kb on - strand, within GFF3673at 175.565 kb on - strand, within GFF3673

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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172,398 - GFF3670 0.49 +0.1
172,398 - GFF3670 0.49 -1.0
172,823 + GFF3670 0.78 +0.1
172,823 + GFF3670 0.78 +0.2
172,823 + GFF3670 0.78 +2.0
172,823 + GFF3670 0.78 -2.0
172,823 + GFF3670 0.78 -1.1
172,823 + GFF3670 0.78 +0.3
172,823 + GFF3670 0.78 -0.7
172,823 + GFF3670 0.78 -1.2
172,823 + GFF3670 0.78 -0.9
172,823 + GFF3670 0.78 -0.1
172,824 - GFF3670 0.78 -0.1
172,824 - GFF3670 0.78 +0.4
172,824 - GFF3670 0.78 +0.2
172,824 - GFF3670 0.78 -0.2
172,824 - GFF3670 0.78 -0.6
172,824 - GFF3670 0.78 -0.5
172,824 - GFF3670 0.78 +0.2
172,832 + GFF3670 0.79 +1.5
172,833 - GFF3670 0.79 +0.4
172,833 - GFF3670 0.79 -0.2
172,838 + GFF3670 0.79 +0.7
172,838 + GFF3670 0.79 -0.7
172,838 + GFF3670 0.79 +1.4
172,838 + GFF3670 0.79 +0.0
172,838 + GFF3670 0.79 -0.3
172,838 + GFF3670 0.79 -0.0
172,838 + GFF3670 0.79 +1.0
172,839 - GFF3670 0.79 -0.6
172,839 - GFF3670 0.79 +0.4
172,839 - GFF3670 0.79 -1.4
172,839 - GFF3670 0.79 +0.1
172,839 - GFF3670 0.79 -0.0
172,839 - GFF3670 0.79 +0.1
172,973 + GFF3670 0.89 -0.2
172,973 + GFF3670 0.89 +0.6
173,051 + -0.5
173,051 + +0.4
173,451 + GFF3671 0.18 +0.8
173,451 + GFF3671 0.18 -0.4
173,451 + GFF3671 0.18 -0.7
173,451 + GFF3671 0.18 -0.5
173,452 - GFF3671 0.18 +0.4
173,452 - GFF3671 0.18 -0.1
173,452 - GFF3671 0.18 +0.6
173,452 - GFF3671 0.18 +1.4
173,452 - GFF3671 0.18 +0.9
173,610 + GFF3671 0.28 -0.6
173,611 - GFF3671 0.28 +0.4
173,802 + GFF3671 0.41 -1.2
173,803 - GFF3671 0.41 +1.5
173,943 + GFF3671 0.50 -0.6
173,943 + GFF3671 0.50 +1.4
173,944 - GFF3671 0.50 -0.5
173,944 - GFF3671 0.50 -0.2
174,000 + GFF3671 0.54 +1.4
174,000 + GFF3671 0.54 +1.7
174,001 - GFF3671 0.54 +1.3
174,001 - GFF3671 0.54 +0.1
174,087 + GFF3671 0.59 -0.6
174,087 + GFF3671 0.59 -0.3
174,087 + GFF3671 0.59 -0.5
174,126 + GFF3671 0.62 +1.6
174,126 + GFF3671 0.62 +1.0
174,126 + GFF3671 0.62 +0.1
174,126 + GFF3671 0.62 -1.1
174,126 + GFF3671 0.62 +1.2
174,126 + GFF3671 0.62 +0.2
174,127 - GFF3671 0.62 -0.1
174,127 - GFF3671 0.62 +0.2
174,127 - GFF3671 0.62 -0.1
174,127 - GFF3671 0.62 +4.4
174,127 - GFF3671 0.62 -2.3
174,127 - GFF3671 0.62 +0.0
174,127 - GFF3671 0.62 -0.3
174,132 + GFF3671 0.62 +0.1
174,132 + GFF3671 0.62 -0.8
174,132 + GFF3671 0.62 -0.9
174,132 + GFF3671 0.62 +0.2
174,132 + GFF3671 0.62 +0.1
174,133 - GFF3671 0.62 +1.3
174,133 - GFF3671 0.62 +2.0
174,133 - GFF3671 0.62 +1.1
174,133 - GFF3671 0.62 -0.8
174,133 - GFF3671 0.62 -0.8
174,133 - GFF3671 0.62 -0.8
174,216 + GFF3671 0.68 -0.6
174,216 + GFF3671 0.68 +1.2
174,216 + GFF3671 0.68 +0.5
174,217 - GFF3671 0.68 -0.5
174,217 - GFF3671 0.68 +0.3
174,217 - GFF3671 0.68 -0.8
174,217 - GFF3671 0.68 -0.1
174,217 - GFF3671 0.68 -0.2
174,217 - GFF3671 0.68 -0.9
174,504 + GFF3671 0.87 -0.3
174,504 + GFF3671 0.87 +0.3
174,504 + GFF3671 0.87 -0.6
174,504 + GFF3671 0.87 -0.0
174,504 + GFF3671 0.87 -0.8
174,504 + GFF3671 0.87 -0.2
174,504 + GFF3671 0.87 -0.2
174,504 + GFF3671 0.87 +0.5
174,504 + GFF3671 0.87 +0.4
174,504 + GFF3671 0.87 -0.2
174,504 + GFF3671 0.87 -2.1
174,504 + GFF3671 0.87 +0.3
174,504 + GFF3671 0.87 -0.3
174,505 - GFF3671 0.87 -0.0
174,505 - GFF3671 0.87 -0.6
174,505 - GFF3671 0.87 -1.4
174,505 - GFF3671 0.87 -0.2
174,505 - GFF3671 0.87 +0.2
174,505 - GFF3671 0.87 +0.2
174,505 - GFF3671 0.87 +0.2
174,505 - GFF3671 0.87 -0.3
174,505 - GFF3671 0.87 -0.5
174,505 - GFF3671 0.87 +0.0
174,505 - GFF3671 0.87 -0.1
174,505 - GFF3671 0.87 -0.5
174,609 + -0.5
175,036 + GFF3672 0.54 +0.2
175,036 + GFF3672 0.54 -0.1
175,036 + GFF3672 0.54 +0.8
175,036 + GFF3672 0.54 +0.1
175,036 + GFF3672 0.54 -0.1
175,036 + GFF3672 0.54 +0.3
175,036 + GFF3672 0.54 -0.2
175,036 + GFF3672 0.54 -0.9
175,036 + GFF3672 0.54 -0.2
175,036 + GFF3672 0.54 -0.3
175,036 + GFF3672 0.54 -0.1
175,036 + GFF3672 0.54 -1.3
175,036 + GFF3672 0.54 -0.6
175,037 - GFF3672 0.55 +1.6
175,037 - GFF3672 0.55 -1.1
175,037 - GFF3672 0.55 -0.8
175,037 - GFF3672 0.55 +0.4
175,037 - GFF3672 0.55 +0.2
175,037 - GFF3672 0.55 -0.7
175,037 - GFF3672 0.55 -3.0
175,037 - GFF3672 0.55 +0.7
175,037 - GFF3672 0.55 -0.0
175,037 - GFF3672 0.55 -0.4
175,037 - GFF3672 0.55 +0.2
175,037 - GFF3672 0.55 -0.4
175,037 - GFF3672 0.55 +1.0
175,037 - GFF3672 0.55 -1.5
175,037 - GFF3672 0.55 +0.0
175,037 - GFF3672 0.55 -0.7
175,037 - GFF3672 0.55 +0.6
175,037 - GFF3672 0.55 +0.2
175,037 - GFF3672 0.55 +0.6
175,037 - GFF3672 0.55 -0.5
175,037 - GFF3672 0.55 -0.8
175,037 - GFF3672 0.55 -0.6
175,060 + GFF3672 0.64 +0.6
175,060 + GFF3672 0.64 -1.2
175,060 + GFF3672 0.64 +0.5
175,060 + GFF3672 0.64 -2.2
175,060 + GFF3672 0.64 +0.3
175,060 + GFF3672 0.64 -2.4
175,061 - GFF3672 0.65 -0.7
175,061 - GFF3672 0.65 -0.8
175,061 - GFF3672 0.65 -0.4
175,169 + -1.3
175,169 + -0.7
175,169 + -2.0
175,170 - -0.1
175,170 - +0.5
175,170 - -0.2
175,170 - -0.1
175,170 - +0.4
175,170 - -0.4
175,170 - -0.1
175,170 - -0.1
175,564 + GFF3673 0.81 +0.6
175,564 + GFF3673 0.81 -0.9
175,564 + GFF3673 0.81 +0.8
175,564 + GFF3673 0.81 -0.2
175,564 + GFF3673 0.81 +0.7
175,564 + GFF3673 0.81 -0.4
175,564 + GFF3673 0.81 +0.6
175,564 + GFF3673 0.81 -0.7
175,565 - GFF3673 0.81 -0.7
175,565 - GFF3673 0.81 -0.9
175,565 - GFF3673 0.81 +0.5
175,565 - GFF3673 0.81 +0.1
175,565 - GFF3673 0.81 +2.0
175,565 - GFF3673 0.81 -0.1
175,565 - GFF3673 0.81 -0.2

Or see this region's nucleotide sequence