Strain Fitness in Variovorax sp. SCN45 around GFF3533

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3531 and GFF3532 are separated by 142 nucleotidesGFF3532 and GFF3533 are separated by 67 nucleotidesGFF3533 and GFF3534 are separated by 161 nucleotidesGFF3534 and GFF3535 are separated by 4 nucleotides GFF3531 - hypothetical protein, at 37,297 to 38,418 GFF3531 GFF3532 - Two-component system response regulator QseB, at 38,561 to 39,217 GFF3532 GFF3533 - Two-component system sensor histidine kinase, at 39,285 to 40,685 GFF3533 GFF3534 - hypothetical protein, at 40,847 to 41,185 GFF3534 GFF3535 - Aquaporin Z, at 41,190 to 41,897 GFF3535 Position (kb) 39 40 41Strain fitness (log2 ratio) -2 -1 0 1 2 3at 38.463 kb on - strandat 38.473 kb on + strandat 38.473 kb on + strandat 38.474 kb on - strandat 38.477 kb on + strandat 38.477 kb on + strandat 38.477 kb on + strandat 38.477 kb on + strandat 38.477 kb on + strandat 38.478 kb on - strandat 38.478 kb on - strandat 38.487 kb on + strandat 38.487 kb on + strandat 38.487 kb on + strandat 38.487 kb on + strandat 38.488 kb on - strandat 38.488 kb on - strandat 38.488 kb on - strandat 38.488 kb on - strandat 38.488 kb on - strandat 38.534 kb on + strandat 38.534 kb on + strandat 38.534 kb on + strandat 38.534 kb on + strandat 38.535 kb on - strandat 38.535 kb on - strandat 38.535 kb on - strandat 38.535 kb on - strandat 38.535 kb on - strandat 38.693 kb on + strand, within GFF3532at 38.694 kb on - strand, within GFF3532at 38.694 kb on - strand, within GFF3532at 38.694 kb on - strand, within GFF3532at 38.852 kb on + strand, within GFF3532at 38.853 kb on - strand, within GFF3532at 39.095 kb on + strand, within GFF3532at 39.095 kb on + strand, within GFF3532at 39.095 kb on + strand, within GFF3532at 39.095 kb on + strand, within GFF3532at 39.232 kb on - strandat 39.250 kb on - strandat 39.284 kb on + strandat 39.285 kb on - strandat 39.285 kb on - strandat 39.302 kb on + strandat 39.302 kb on + strandat 39.303 kb on - strandat 39.303 kb on - strandat 39.414 kb on + strandat 39.415 kb on - strandat 39.471 kb on + strand, within GFF3533at 39.553 kb on + strand, within GFF3533at 39.553 kb on + strand, within GFF3533at 39.553 kb on + strand, within GFF3533at 39.553 kb on + strand, within GFF3533at 39.553 kb on + strand, within GFF3533at 39.553 kb on + strand, within GFF3533at 39.553 kb on + strand, within GFF3533at 39.553 kb on + strand, within GFF3533at 39.553 kb on + strand, within GFF3533at 39.554 kb on - strand, within GFF3533at 39.554 kb on - strand, within GFF3533at 39.554 kb on - strand, within GFF3533at 39.741 kb on + strand, within GFF3533at 39.742 kb on - strand, within GFF3533at 39.742 kb on - strand, within GFF3533at 40.066 kb on + strand, within GFF3533at 40.383 kb on + strand, within GFF3533at 40.383 kb on + strand, within GFF3533at 40.383 kb on + strand, within GFF3533at 40.383 kb on + strand, within GFF3533at 40.384 kb on - strand, within GFF3533at 40.639 kb on + strandat 40.639 kb on + strandat 40.640 kb on - strandat 40.640 kb on - strandat 40.640 kb on - strandat 40.680 kb on + strandat 40.681 kb on - strandat 40.706 kb on + strandat 40.706 kb on + strandat 40.706 kb on + strandat 40.706 kb on + strandat 40.730 kb on + strandat 40.730 kb on + strandat 40.730 kb on + strandat 40.730 kb on + strandat 40.766 kb on + strandat 40.766 kb on + strandat 40.767 kb on - strandat 40.767 kb on - strandat 40.852 kb on + strandat 40.852 kb on + strandat 40.852 kb on + strandat 40.852 kb on + strandat 40.852 kb on + strandat 40.853 kb on - strandat 40.853 kb on - strandat 40.853 kb on - strandat 40.853 kb on - strandat 40.853 kb on - strandat 40.853 kb on - strandat 40.853 kb on - strandat 40.853 kb on - strandat 41.102 kb on + strand, within GFF3534at 41.225 kb on - strandat 41.293 kb on + strand, within GFF3535at 41.294 kb on - strand, within GFF3535at 41.294 kb on - strand, within GFF3535at 41.294 kb on - strand, within GFF3535at 41.294 kb on - strand, within GFF3535at 41.475 kb on + strand, within GFF3535at 41.475 kb on + strand, within GFF3535at 41.475 kb on + strand, within GFF3535at 41.475 kb on + strand, within GFF3535at 41.475 kb on + strand, within GFF3535at 41.475 kb on + strand, within GFF3535at 41.476 kb on - strand, within GFF3535at 41.476 kb on - strand, within GFF3535at 41.506 kb on + strand, within GFF3535at 41.506 kb on + strand, within GFF3535at 41.506 kb on + strand, within GFF3535at 41.506 kb on + strand, within GFF3535at 41.506 kb on + strand, within GFF3535at 41.506 kb on + strand, within GFF3535at 41.506 kb on + strand, within GFF3535at 41.507 kb on - strand, within GFF3535at 41.507 kb on - strand, within GFF3535at 41.507 kb on - strand, within GFF3535at 41.507 kb on - strand, within GFF3535at 41.507 kb on - strand, within GFF3535at 41.587 kb on + strand, within GFF3535at 41.587 kb on + strand, within GFF3535at 41.587 kb on + strand, within GFF3535at 41.588 kb on - strand, within GFF3535at 41.588 kb on - strand, within GFF3535at 41.588 kb on - strand, within GFF3535at 41.635 kb on + strand, within GFF3535at 41.636 kb on - strand, within GFF3535

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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38,463 - -0.3
38,473 + -1.2
38,473 + +0.0
38,474 - -0.8
38,477 + +0.7
38,477 + -1.0
38,477 + -0.7
38,477 + -0.0
38,477 + +0.6
38,478 - +0.1
38,478 - -2.1
38,487 + -1.1
38,487 + +0.5
38,487 + -1.8
38,487 + -0.3
38,488 - +1.0
38,488 - +0.4
38,488 - -0.8
38,488 - -0.5
38,488 - -0.5
38,534 + -0.6
38,534 + +0.2
38,534 + -0.8
38,534 + +0.4
38,535 - -0.5
38,535 - +1.6
38,535 - -0.3
38,535 - +0.5
38,535 - +1.0
38,693 + GFF3532 0.20 -0.0
38,694 - GFF3532 0.20 -0.6
38,694 - GFF3532 0.20 +0.1
38,694 - GFF3532 0.20 -0.2
38,852 + GFF3532 0.44 +0.6
38,853 - GFF3532 0.44 -0.3
39,095 + GFF3532 0.81 -0.0
39,095 + GFF3532 0.81 +0.2
39,095 + GFF3532 0.81 -0.7
39,095 + GFF3532 0.81 +0.4
39,232 - +0.7
39,250 - -1.3
39,284 + +0.5
39,285 - +0.5
39,285 - -1.0
39,302 + -0.3
39,302 + -0.3
39,303 - +0.0
39,303 - -0.6
39,414 + -0.2
39,415 - -0.3
39,471 + GFF3533 0.13 -0.2
39,553 + GFF3533 0.19 +0.1
39,553 + GFF3533 0.19 +0.9
39,553 + GFF3533 0.19 -1.2
39,553 + GFF3533 0.19 -1.0
39,553 + GFF3533 0.19 +0.7
39,553 + GFF3533 0.19 -0.9
39,553 + GFF3533 0.19 -0.5
39,553 + GFF3533 0.19 -0.3
39,553 + GFF3533 0.19 -0.1
39,554 - GFF3533 0.19 -0.6
39,554 - GFF3533 0.19 +0.8
39,554 - GFF3533 0.19 -0.2
39,741 + GFF3533 0.33 -0.5
39,742 - GFF3533 0.33 +3.0
39,742 - GFF3533 0.33 -0.8
40,066 + GFF3533 0.56 -0.3
40,383 + GFF3533 0.78 -1.5
40,383 + GFF3533 0.78 +0.8
40,383 + GFF3533 0.78 -1.9
40,383 + GFF3533 0.78 -1.1
40,384 - GFF3533 0.78 -0.5
40,639 + -1.2
40,639 + -1.1
40,640 - +0.3
40,640 - -0.0
40,640 - -0.6
40,680 + -0.5
40,681 - -0.6
40,706 + -1.7
40,706 + -0.5
40,706 + +1.7
40,706 + +0.6
40,730 + -0.3
40,730 + +0.5
40,730 + +0.4
40,730 + -0.0
40,766 + +0.4
40,766 + -0.9
40,767 - -0.6
40,767 - +2.0
40,852 + +0.0
40,852 + +1.0
40,852 + +1.0
40,852 + -0.5
40,852 + -0.3
40,853 - +0.1
40,853 - +0.3
40,853 - -0.4
40,853 - -0.2
40,853 - +0.2
40,853 - +0.2
40,853 - -0.3
40,853 - -0.2
41,102 + GFF3534 0.75 -0.2
41,225 - -0.0
41,293 + GFF3535 0.15 +1.8
41,294 - GFF3535 0.15 +0.4
41,294 - GFF3535 0.15 -0.1
41,294 - GFF3535 0.15 -0.4
41,294 - GFF3535 0.15 -0.3
41,475 + GFF3535 0.40 -0.6
41,475 + GFF3535 0.40 -0.0
41,475 + GFF3535 0.40 +0.2
41,475 + GFF3535 0.40 -0.3
41,475 + GFF3535 0.40 -0.9
41,475 + GFF3535 0.40 -1.1
41,476 - GFF3535 0.40 +1.2
41,476 - GFF3535 0.40 +0.3
41,506 + GFF3535 0.45 -0.2
41,506 + GFF3535 0.45 -0.3
41,506 + GFF3535 0.45 +0.9
41,506 + GFF3535 0.45 +0.2
41,506 + GFF3535 0.45 +0.4
41,506 + GFF3535 0.45 -0.6
41,506 + GFF3535 0.45 -1.7
41,507 - GFF3535 0.45 +0.7
41,507 - GFF3535 0.45 +0.8
41,507 - GFF3535 0.45 -0.5
41,507 - GFF3535 0.45 -1.9
41,507 - GFF3535 0.45 +0.4
41,587 + GFF3535 0.56 -1.2
41,587 + GFF3535 0.56 -0.8
41,587 + GFF3535 0.56 -0.4
41,588 - GFF3535 0.56 -0.4
41,588 - GFF3535 0.56 -0.1
41,588 - GFF3535 0.56 +1.2
41,635 + GFF3535 0.63 +0.2
41,636 - GFF3535 0.63 -0.4

Or see this region's nucleotide sequence