Strain Fitness in Variovorax sp. SCN45 around GFF349

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF347 and GFF348 are separated by 69 nucleotidesGFF348 and GFF349 are separated by 49 nucleotidesGFF349 and GFF350 are separated by 229 nucleotidesGFF350 and GFF351 are separated by 19 nucleotides GFF347 - Exported protein, at 380,199 to 380,657 GFF347 GFF348 - Superoxide dismutase [Fe] (EC 1.15.1.1), at 380,727 to 381,308 GFF348 GFF349 - Exodeoxyribonuclease VII large subunit (EC 3.1.11.6), at 381,358 to 382,755 GFF349 GFF350 - Ferric siderophore transport system, biopolymer transport protein ExbB, at 382,985 to 383,617 GFF350 GFF351 - Biopolymer transport protein ExbD/TolR, at 383,637 to 384,062 GFF351 Position (kb) 381 382 383Strain fitness (log2 ratio) -2 -1 0 1 2 3at 380.535 kb on + strand, within GFF347at 380.562 kb on + strand, within GFF347at 380.562 kb on + strand, within GFF347at 380.562 kb on + strand, within GFF347at 380.562 kb on + strand, within GFF347at 380.562 kb on + strand, within GFF347at 380.563 kb on - strand, within GFF347at 380.563 kb on - strand, within GFF347at 380.563 kb on - strand, within GFF347at 380.810 kb on - strand, within GFF348at 380.819 kb on - strand, within GFF348at 380.819 kb on - strand, within GFF348at 380.819 kb on - strand, within GFF348at 380.819 kb on - strand, within GFF348at 380.819 kb on - strand, within GFF348at 380.819 kb on - strand, within GFF348at 380.819 kb on - strand, within GFF348at 380.819 kb on - strand, within GFF348at 380.819 kb on - strand, within GFF348at 380.819 kb on - strand, within GFF348at 380.819 kb on - strand, within GFF348at 380.819 kb on - strand, within GFF348at 380.819 kb on - strand, within GFF348at 380.819 kb on - strand, within GFF348at 380.819 kb on - strand, within GFF348at 380.819 kb on - strand, within GFF348at 380.819 kb on - strand, within GFF348at 380.819 kb on - strand, within GFF348at 380.822 kb on - strand, within GFF348at 380.822 kb on - strand, within GFF348at 380.822 kb on - strand, within GFF348at 380.822 kb on - strand, within GFF348at 380.822 kb on - strand, within GFF348at 380.822 kb on - strand, within GFF348at 380.957 kb on + strand, within GFF348at 380.999 kb on - strand, within GFF348at 380.999 kb on - strand, within GFF348at 380.999 kb on - strand, within GFF348at 380.999 kb on - strand, within GFF348at 380.999 kb on - strand, within GFF348at 380.999 kb on - strand, within GFF348at 380.999 kb on - strand, within GFF348at 380.999 kb on - strand, within GFF348at 380.999 kb on - strand, within GFF348at 380.999 kb on - strand, within GFF348at 381.115 kb on + strand, within GFF348at 381.115 kb on + strand, within GFF348at 381.115 kb on + strand, within GFF348at 381.115 kb on + strand, within GFF348at 381.116 kb on - strand, within GFF348at 381.116 kb on - strand, within GFF348at 381.116 kb on - strand, within GFF348at 381.116 kb on - strand, within GFF348at 381.116 kb on - strand, within GFF348at 381.116 kb on - strand, within GFF348at 381.116 kb on - strand, within GFF348at 381.116 kb on - strand, within GFF348at 381.116 kb on - strand, within GFF348at 381.116 kb on - strand, within GFF348at 381.116 kb on - strand, within GFF348at 381.116 kb on - strand, within GFF348at 381.116 kb on - strand, within GFF348at 381.116 kb on - strand, within GFF348at 381.205 kb on + strand, within GFF348at 381.205 kb on + strand, within GFF348at 381.205 kb on + strand, within GFF348at 381.205 kb on + strand, within GFF348at 381.205 kb on + strand, within GFF348at 381.232 kb on + strand, within GFF348at 381.232 kb on + strand, within GFF348at 381.232 kb on + strand, within GFF348at 381.232 kb on + strand, within GFF348at 381.232 kb on + strand, within GFF348at 381.232 kb on + strand, within GFF348at 381.232 kb on + strand, within GFF348at 381.280 kb on + strandat 381.281 kb on - strandat 381.281 kb on - strandat 381.348 kb on + strandat 381.349 kb on - strandat 381.349 kb on - strandat 381.349 kb on - strandat 381.349 kb on - strandat 381.355 kb on + strandat 381.355 kb on + strandat 381.355 kb on + strandat 381.355 kb on + strandat 381.355 kb on + strandat 381.355 kb on + strandat 381.356 kb on - strandat 381.356 kb on - strandat 381.356 kb on - strandat 381.356 kb on - strandat 381.356 kb on - strandat 381.356 kb on - strandat 381.356 kb on - strandat 381.359 kb on + strandat 381.359 kb on + strandat 381.359 kb on + strandat 381.359 kb on + strandat 381.359 kb on + strandat 381.359 kb on + strandat 381.359 kb on + strandat 381.360 kb on - strandat 381.360 kb on - strandat 381.360 kb on - strandat 381.512 kb on + strand, within GFF349at 381.512 kb on + strand, within GFF349at 381.604 kb on + strand, within GFF349at 381.604 kb on + strand, within GFF349at 381.604 kb on + strand, within GFF349at 381.604 kb on + strand, within GFF349at 381.604 kb on + strand, within GFF349at 381.604 kb on + strand, within GFF349at 381.604 kb on + strand, within GFF349at 381.604 kb on + strand, within GFF349at 381.605 kb on - strand, within GFF349at 381.605 kb on - strand, within GFF349at 381.605 kb on - strand, within GFF349at 381.677 kb on + strand, within GFF349at 381.677 kb on + strand, within GFF349at 381.678 kb on - strand, within GFF349at 381.781 kb on + strand, within GFF349at 381.781 kb on + strand, within GFF349at 381.781 kb on + strand, within GFF349at 381.781 kb on + strand, within GFF349at 381.781 kb on + strand, within GFF349at 381.781 kb on + strand, within GFF349at 381.781 kb on + strand, within GFF349at 381.782 kb on - strand, within GFF349at 381.782 kb on - strand, within GFF349at 381.782 kb on - strand, within GFF349at 381.782 kb on - strand, within GFF349at 381.782 kb on - strand, within GFF349at 381.782 kb on - strand, within GFF349at 381.782 kb on - strand, within GFF349at 381.782 kb on - strand, within GFF349at 381.782 kb on - strand, within GFF349at 381.782 kb on - strand, within GFF349at 381.782 kb on - strand, within GFF349at 381.782 kb on - strand, within GFF349at 382.079 kb on + strand, within GFF349at 382.079 kb on + strand, within GFF349at 382.080 kb on - strand, within GFF349at 382.080 kb on - strand, within GFF349at 382.080 kb on - strand, within GFF349at 382.165 kb on + strand, within GFF349at 382.248 kb on + strand, within GFF349at 382.248 kb on + strand, within GFF349at 382.248 kb on + strand, within GFF349at 382.249 kb on - strand, within GFF349at 382.249 kb on - strand, within GFF349at 382.249 kb on - strand, within GFF349at 382.391 kb on + strand, within GFF349at 382.391 kb on + strand, within GFF349at 382.391 kb on + strand, within GFF349at 382.391 kb on + strand, within GFF349at 382.391 kb on + strand, within GFF349at 382.391 kb on + strand, within GFF349at 382.391 kb on + strand, within GFF349at 382.392 kb on - strand, within GFF349at 382.392 kb on - strand, within GFF349at 382.392 kb on - strand, within GFF349at 382.392 kb on - strand, within GFF349at 382.392 kb on - strand, within GFF349at 382.514 kb on + strand, within GFF349at 382.514 kb on + strand, within GFF349at 382.514 kb on + strand, within GFF349at 382.514 kb on + strand, within GFF349at 382.514 kb on + strand, within GFF349at 382.514 kb on + strand, within GFF349at 382.514 kb on + strand, within GFF349at 382.514 kb on + strand, within GFF349at 382.514 kb on + strand, within GFF349at 382.515 kb on - strand, within GFF349at 382.515 kb on - strand, within GFF349at 382.515 kb on - strand, within GFF349at 382.515 kb on - strand, within GFF349at 382.515 kb on - strand, within GFF349at 382.515 kb on - strand, within GFF349at 382.515 kb on - strand, within GFF349at 382.515 kb on - strand, within GFF349at 382.515 kb on - strand, within GFF349at 382.515 kb on - strand, within GFF349at 382.527 kb on + strand, within GFF349at 382.528 kb on - strand, within GFF349at 382.851 kb on + strandat 382.851 kb on + strandat 382.852 kb on - strandat 382.852 kb on - strandat 382.864 kb on + strandat 382.865 kb on - strandat 382.944 kb on + strandat 382.966 kb on + strandat 382.966 kb on + strandat 382.998 kb on + strandat 382.998 kb on + strandat 382.998 kb on + strandat 382.998 kb on + strandat 382.998 kb on + strandat 382.998 kb on + strandat 382.998 kb on + strandat 382.998 kb on + strandat 382.998 kb on + strandat 382.998 kb on + strandat 382.998 kb on + strandat 382.998 kb on + strandat 383.062 kb on + strand, within GFF350at 383.064 kb on + strand, within GFF350at 383.064 kb on + strand, within GFF350at 383.064 kb on + strand, within GFF350at 383.064 kb on + strand, within GFF350at 383.064 kb on + strand, within GFF350at 383.064 kb on + strand, within GFF350at 383.064 kb on + strand, within GFF350at 383.064 kb on + strand, within GFF350at 383.065 kb on - strand, within GFF350at 383.065 kb on - strand, within GFF350at 383.065 kb on - strand, within GFF350at 383.065 kb on - strand, within GFF350at 383.065 kb on - strand, within GFF350at 383.097 kb on + strand, within GFF350at 383.098 kb on - strand, within GFF350at 383.312 kb on + strand, within GFF350at 383.312 kb on + strand, within GFF350at 383.474 kb on + strand, within GFF350at 383.474 kb on + strand, within GFF350at 383.474 kb on + strand, within GFF350at 383.474 kb on + strand, within GFF350at 383.474 kb on + strand, within GFF350at 383.474 kb on + strand, within GFF350at 383.474 kb on + strand, within GFF350at 383.528 kb on + strand, within GFF350at 383.528 kb on + strand, within GFF350at 383.552 kb on + strand, within GFF350at 383.552 kb on + strand, within GFF350at 383.739 kb on + strand, within GFF351

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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380,535 + GFF347 0.73 -0.2
380,562 + GFF347 0.79 -1.3
380,562 + GFF347 0.79 +0.0
380,562 + GFF347 0.79 -1.4
380,562 + GFF347 0.79 +0.3
380,562 + GFF347 0.79 +0.4
380,563 - GFF347 0.79 -0.2
380,563 - GFF347 0.79 -0.2
380,563 - GFF347 0.79 -1.2
380,810 - GFF348 0.14 +0.7
380,819 - GFF348 0.16 +0.3
380,819 - GFF348 0.16 -0.3
380,819 - GFF348 0.16 -0.1
380,819 - GFF348 0.16 +0.3
380,819 - GFF348 0.16 +0.2
380,819 - GFF348 0.16 -0.9
380,819 - GFF348 0.16 -0.6
380,819 - GFF348 0.16 +0.2
380,819 - GFF348 0.16 +0.8
380,819 - GFF348 0.16 -1.2
380,819 - GFF348 0.16 -1.6
380,819 - GFF348 0.16 +0.2
380,819 - GFF348 0.16 -1.0
380,819 - GFF348 0.16 -0.7
380,819 - GFF348 0.16 -0.6
380,819 - GFF348 0.16 -0.3
380,819 - GFF348 0.16 -0.2
380,819 - GFF348 0.16 +3.0
380,822 - GFF348 0.16 -1.3
380,822 - GFF348 0.16 -0.5
380,822 - GFF348 0.16 +0.4
380,822 - GFF348 0.16 -0.2
380,822 - GFF348 0.16 -1.2
380,822 - GFF348 0.16 -1.4
380,957 + GFF348 0.40 +0.5
380,999 - GFF348 0.47 +1.0
380,999 - GFF348 0.47 -0.8
380,999 - GFF348 0.47 +0.4
380,999 - GFF348 0.47 +0.7
380,999 - GFF348 0.47 -0.3
380,999 - GFF348 0.47 -0.3
380,999 - GFF348 0.47 -0.8
380,999 - GFF348 0.47 +1.0
380,999 - GFF348 0.47 +0.3
380,999 - GFF348 0.47 -0.9
381,115 + GFF348 0.67 -1.4
381,115 + GFF348 0.67 -0.7
381,115 + GFF348 0.67 -0.6
381,115 + GFF348 0.67 -1.1
381,116 - GFF348 0.67 +0.4
381,116 - GFF348 0.67 -0.4
381,116 - GFF348 0.67 -0.2
381,116 - GFF348 0.67 +0.0
381,116 - GFF348 0.67 +0.6
381,116 - GFF348 0.67 -0.0
381,116 - GFF348 0.67 -0.2
381,116 - GFF348 0.67 -0.2
381,116 - GFF348 0.67 -0.2
381,116 - GFF348 0.67 -0.3
381,116 - GFF348 0.67 +0.3
381,116 - GFF348 0.67 +1.6
381,116 - GFF348 0.67 +1.0
381,116 - GFF348 0.67 +1.0
381,205 + GFF348 0.82 -0.8
381,205 + GFF348 0.82 +1.3
381,205 + GFF348 0.82 +1.6
381,205 + GFF348 0.82 +1.2
381,205 + GFF348 0.82 -0.1
381,232 + GFF348 0.87 -0.7
381,232 + GFF348 0.87 +0.4
381,232 + GFF348 0.87 +1.4
381,232 + GFF348 0.87 +0.3
381,232 + GFF348 0.87 -0.2
381,232 + GFF348 0.87 +1.2
381,232 + GFF348 0.87 +0.0
381,280 + +0.0
381,281 - -1.8
381,281 - +0.0
381,348 + -0.2
381,349 - -0.5
381,349 - -0.4
381,349 - +0.0
381,349 - -1.3
381,355 + +0.0
381,355 + -0.6
381,355 + -0.3
381,355 + -0.1
381,355 + -1.5
381,355 + +0.3
381,356 - +0.1
381,356 - -1.1
381,356 - +1.0
381,356 - +0.0
381,356 - +1.5
381,356 - +0.1
381,356 - -0.4
381,359 + +0.0
381,359 + +0.8
381,359 + -0.8
381,359 + -1.2
381,359 + -1.7
381,359 + -0.7
381,359 + -0.6
381,360 - -0.1
381,360 - -0.1
381,360 - -0.4
381,512 + GFF349 0.11 -0.6
381,512 + GFF349 0.11 -0.1
381,604 + GFF349 0.18 -0.4
381,604 + GFF349 0.18 -0.6
381,604 + GFF349 0.18 +0.6
381,604 + GFF349 0.18 +2.0
381,604 + GFF349 0.18 +1.7
381,604 + GFF349 0.18 -1.0
381,604 + GFF349 0.18 +0.8
381,604 + GFF349 0.18 -0.6
381,605 - GFF349 0.18 -0.5
381,605 - GFF349 0.18 -0.5
381,605 - GFF349 0.18 +1.3
381,677 + GFF349 0.23 +0.2
381,677 + GFF349 0.23 -0.9
381,678 - GFF349 0.23 +0.6
381,781 + GFF349 0.30 +1.4
381,781 + GFF349 0.30 -0.9
381,781 + GFF349 0.30 +0.3
381,781 + GFF349 0.30 -0.5
381,781 + GFF349 0.30 +0.3
381,781 + GFF349 0.30 +1.0
381,781 + GFF349 0.30 +1.7
381,782 - GFF349 0.30 -1.0
381,782 - GFF349 0.30 -0.1
381,782 - GFF349 0.30 -1.8
381,782 - GFF349 0.30 -0.5
381,782 - GFF349 0.30 -1.3
381,782 - GFF349 0.30 +0.5
381,782 - GFF349 0.30 -0.6
381,782 - GFF349 0.30 -0.5
381,782 - GFF349 0.30 -1.1
381,782 - GFF349 0.30 +0.4
381,782 - GFF349 0.30 -0.1
381,782 - GFF349 0.30 -0.2
382,079 + GFF349 0.52 +2.0
382,079 + GFF349 0.52 -0.6
382,080 - GFF349 0.52 +2.8
382,080 - GFF349 0.52 -0.2
382,080 - GFF349 0.52 -0.9
382,165 + GFF349 0.58 -0.4
382,248 + GFF349 0.64 -0.2
382,248 + GFF349 0.64 -0.2
382,248 + GFF349 0.64 -0.6
382,249 - GFF349 0.64 +0.3
382,249 - GFF349 0.64 +0.4
382,249 - GFF349 0.64 -0.6
382,391 + GFF349 0.74 -1.3
382,391 + GFF349 0.74 -0.7
382,391 + GFF349 0.74 +0.2
382,391 + GFF349 0.74 -0.3
382,391 + GFF349 0.74 -1.5
382,391 + GFF349 0.74 -0.2
382,391 + GFF349 0.74 +0.1
382,392 - GFF349 0.74 -0.2
382,392 - GFF349 0.74 -1.9
382,392 - GFF349 0.74 +0.1
382,392 - GFF349 0.74 +1.4
382,392 - GFF349 0.74 +0.1
382,514 + GFF349 0.83 -0.7
382,514 + GFF349 0.83 -1.6
382,514 + GFF349 0.83 -0.5
382,514 + GFF349 0.83 -1.0
382,514 + GFF349 0.83 -1.4
382,514 + GFF349 0.83 -0.6
382,514 + GFF349 0.83 -1.0
382,514 + GFF349 0.83 -0.4
382,514 + GFF349 0.83 +1.0
382,515 - GFF349 0.83 -0.4
382,515 - GFF349 0.83 +0.2
382,515 - GFF349 0.83 -0.1
382,515 - GFF349 0.83 -0.3
382,515 - GFF349 0.83 -0.7
382,515 - GFF349 0.83 -0.6
382,515 - GFF349 0.83 -0.3
382,515 - GFF349 0.83 +0.3
382,515 - GFF349 0.83 -0.5
382,515 - GFF349 0.83 +2.0
382,527 + GFF349 0.84 -0.3
382,528 - GFF349 0.84 +1.0
382,851 + +0.4
382,851 + -0.5
382,852 - +1.0
382,852 - -1.6
382,864 + +0.2
382,865 - -1.0
382,944 + -0.4
382,966 + +0.2
382,966 + +1.5
382,998 + +1.9
382,998 + +1.0
382,998 + +0.7
382,998 + +1.1
382,998 + +0.8
382,998 + +1.3
382,998 + +1.0
382,998 + +0.2
382,998 + +0.4
382,998 + -0.1
382,998 + +0.4
382,998 + +1.8
383,062 + GFF350 0.12 -1.2
383,064 + GFF350 0.12 +1.0
383,064 + GFF350 0.12 +1.1
383,064 + GFF350 0.12 +2.0
383,064 + GFF350 0.12 +1.0
383,064 + GFF350 0.12 +1.4
383,064 + GFF350 0.12 +0.0
383,064 + GFF350 0.12 -0.4
383,064 + GFF350 0.12 +0.6
383,065 - GFF350 0.13 +0.7
383,065 - GFF350 0.13 +1.0
383,065 - GFF350 0.13 +0.8
383,065 - GFF350 0.13 +0.8
383,065 - GFF350 0.13 +0.8
383,097 + GFF350 0.18 +1.2
383,098 - GFF350 0.18 +0.4
383,312 + GFF350 0.52 +0.7
383,312 + GFF350 0.52 +0.2
383,474 + GFF350 0.77 +1.6
383,474 + GFF350 0.77 +0.3
383,474 + GFF350 0.77 +2.4
383,474 + GFF350 0.77 -0.1
383,474 + GFF350 0.77 +1.0
383,474 + GFF350 0.77 +0.4
383,474 + GFF350 0.77 -0.6
383,528 + GFF350 0.86 +0.6
383,528 + GFF350 0.86 +1.3
383,552 + GFF350 0.90 +3.0
383,552 + GFF350 0.90 +1.6
383,739 + GFF351 0.24 +0.6

Or see this region's nucleotide sequence