Strain Fitness in Variovorax sp. SCN45 around GFF3488

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3487 and GFF3488 are separated by 262 nucleotidesGFF3488 and GFF3489 are separated by 86 nucleotidesGFF3489 and GFF3490 are separated by 12 nucleotides GFF3487 - InterPro IPR005806 COGs COG2146, at 309,568 to 310,902 GFF3487 GFF3488 - Transcriptional regulator, GntR family, at 311,165 to 311,899 GFF3488 GFF3489 - Transcriptional regulator, AcrR family, at 311,986 to 312,603 GFF3489 GFF3490 - Putative amidase R03093, at 312,616 to 314,112 GFF3490 Position (kb) 311 312Strain fitness (log2 ratio) -2 -1 0 1 2 3at 310.214 kb on + strand, within GFF3487at 310.214 kb on + strand, within GFF3487at 310.214 kb on + strand, within GFF3487at 310.214 kb on + strand, within GFF3487at 310.215 kb on - strand, within GFF3487at 310.215 kb on - strand, within GFF3487at 310.215 kb on - strand, within GFF3487at 310.215 kb on - strand, within GFF3487at 310.250 kb on + strand, within GFF3487at 310.250 kb on + strand, within GFF3487at 310.250 kb on + strand, within GFF3487at 310.250 kb on + strand, within GFF3487at 310.251 kb on - strand, within GFF3487at 310.316 kb on + strand, within GFF3487at 310.316 kb on + strand, within GFF3487at 310.316 kb on + strand, within GFF3487at 310.316 kb on + strand, within GFF3487at 310.316 kb on + strand, within GFF3487at 310.317 kb on - strand, within GFF3487at 310.317 kb on - strand, within GFF3487at 310.317 kb on - strand, within GFF3487at 310.317 kb on - strand, within GFF3487at 310.358 kb on + strand, within GFF3487at 310.358 kb on + strand, within GFF3487at 310.358 kb on + strand, within GFF3487at 310.358 kb on + strand, within GFF3487at 310.358 kb on + strand, within GFF3487at 310.359 kb on - strand, within GFF3487at 310.359 kb on - strand, within GFF3487at 310.378 kb on + strand, within GFF3487at 310.502 kb on + strand, within GFF3487at 310.502 kb on + strand, within GFF3487at 310.502 kb on + strand, within GFF3487at 310.502 kb on + strand, within GFF3487at 310.502 kb on + strand, within GFF3487at 310.502 kb on + strand, within GFF3487at 310.502 kb on + strand, within GFF3487at 310.502 kb on + strand, within GFF3487at 310.503 kb on - strand, within GFF3487at 310.503 kb on - strand, within GFF3487at 310.503 kb on - strand, within GFF3487at 310.503 kb on - strand, within GFF3487at 310.503 kb on - strand, within GFF3487at 310.503 kb on - strand, within GFF3487at 310.503 kb on - strand, within GFF3487at 310.539 kb on - strand, within GFF3487at 310.768 kb on + strand, within GFF3487at 310.768 kb on + strand, within GFF3487at 310.769 kb on - strandat 310.826 kb on + strandat 310.933 kb on + strandat 310.934 kb on - strandat 310.934 kb on - strandat 310.934 kb on - strandat 310.962 kb on - strandat 310.962 kb on - strandat 311.020 kb on + strandat 311.020 kb on + strandat 311.020 kb on + strandat 311.020 kb on + strandat 311.020 kb on + strandat 311.020 kb on + strandat 311.020 kb on + strandat 311.021 kb on - strandat 311.021 kb on - strandat 311.021 kb on - strandat 311.021 kb on - strandat 311.021 kb on - strandat 311.021 kb on - strandat 311.021 kb on - strandat 311.124 kb on - strandat 311.124 kb on - strandat 311.124 kb on - strandat 311.153 kb on + strandat 311.154 kb on - strandat 311.154 kb on - strandat 311.154 kb on - strandat 311.154 kb on - strandat 311.355 kb on - strand, within GFF3488at 311.540 kb on + strand, within GFF3488at 311.540 kb on + strand, within GFF3488at 311.540 kb on + strand, within GFF3488at 311.540 kb on + strand, within GFF3488at 311.540 kb on + strand, within GFF3488at 311.540 kb on + strand, within GFF3488at 311.541 kb on - strand, within GFF3488at 311.541 kb on - strand, within GFF3488at 311.541 kb on - strand, within GFF3488at 311.549 kb on + strand, within GFF3488at 311.549 kb on + strand, within GFF3488at 311.550 kb on - strand, within GFF3488at 311.550 kb on - strand, within GFF3488at 311.550 kb on - strand, within GFF3488at 311.550 kb on - strand, within GFF3488at 311.550 kb on - strand, within GFF3488at 311.822 kb on + strand, within GFF3488at 311.822 kb on + strand, within GFF3488at 311.822 kb on + strand, within GFF3488at 311.822 kb on + strand, within GFF3488at 311.823 kb on - strand, within GFF3488at 311.823 kb on - strand, within GFF3488at 311.823 kb on - strand, within GFF3488at 311.823 kb on - strand, within GFF3488at 311.823 kb on - strand, within GFF3488at 311.823 kb on - strand, within GFF3488at 311.903 kb on + strandat 311.903 kb on + strandat 311.903 kb on + strandat 311.903 kb on + strandat 311.904 kb on - strandat 311.904 kb on - strandat 311.904 kb on - strandat 311.904 kb on - strandat 311.917 kb on + strandat 311.918 kb on - strandat 311.918 kb on - strandat 311.973 kb on + strandat 311.974 kb on - strandat 312.151 kb on + strand, within GFF3489at 312.151 kb on + strand, within GFF3489at 312.151 kb on + strand, within GFF3489at 312.151 kb on + strand, within GFF3489at 312.151 kb on + strand, within GFF3489at 312.151 kb on + strand, within GFF3489at 312.151 kb on + strand, within GFF3489at 312.151 kb on + strand, within GFF3489at 312.151 kb on + strand, within GFF3489at 312.151 kb on + strand, within GFF3489at 312.151 kb on + strand, within GFF3489at 312.151 kb on + strand, within GFF3489at 312.151 kb on + strand, within GFF3489at 312.151 kb on + strand, within GFF3489at 312.152 kb on - strand, within GFF3489at 312.152 kb on - strand, within GFF3489at 312.152 kb on - strand, within GFF3489at 312.152 kb on - strand, within GFF3489at 312.152 kb on - strand, within GFF3489at 312.152 kb on - strand, within GFF3489at 312.152 kb on - strand, within GFF3489at 312.152 kb on - strand, within GFF3489at 312.373 kb on + strand, within GFF3489at 312.374 kb on - strand, within GFF3489at 312.374 kb on - strand, within GFF3489at 312.374 kb on - strand, within GFF3489at 312.478 kb on + strand, within GFF3489at 312.478 kb on + strand, within GFF3489at 312.478 kb on + strand, within GFF3489at 312.478 kb on + strand, within GFF3489at 312.478 kb on + strand, within GFF3489at 312.478 kb on + strand, within GFF3489at 312.478 kb on + strand, within GFF3489at 312.478 kb on + strand, within GFF3489at 312.478 kb on + strand, within GFF3489at 312.478 kb on + strand, within GFF3489at 312.478 kb on + strand, within GFF3489at 312.479 kb on - strand, within GFF3489at 312.479 kb on - strand, within GFF3489at 312.479 kb on - strand, within GFF3489at 312.479 kb on - strand, within GFF3489at 312.479 kb on - strand, within GFF3489at 312.479 kb on - strand, within GFF3489at 312.479 kb on - strand, within GFF3489at 312.479 kb on - strand, within GFF3489at 312.479 kb on - strand, within GFF3489at 312.479 kb on - strand, within GFF3489at 312.479 kb on - strand, within GFF3489at 312.479 kb on - strand, within GFF3489at 312.479 kb on - strand, within GFF3489at 312.479 kb on - strand, within GFF3489at 312.818 kb on + strand, within GFF3490at 312.818 kb on + strand, within GFF3490at 312.818 kb on + strand, within GFF3490at 312.818 kb on + strand, within GFF3490at 312.818 kb on + strand, within GFF3490at 312.819 kb on - strand, within GFF3490at 312.819 kb on - strand, within GFF3490at 312.819 kb on - strand, within GFF3490at 312.821 kb on + strand, within GFF3490at 312.821 kb on + strand, within GFF3490at 312.821 kb on + strand, within GFF3490at 312.821 kb on + strand, within GFF3490at 312.821 kb on + strand, within GFF3490at 312.821 kb on + strand, within GFF3490at 312.821 kb on + strand, within GFF3490at 312.821 kb on + strand, within GFF3490at 312.821 kb on + strand, within GFF3490at 312.821 kb on + strand, within GFF3490at 312.821 kb on + strand, within GFF3490at 312.821 kb on + strand, within GFF3490at 312.821 kb on + strand, within GFF3490at 312.821 kb on + strand, within GFF3490at 312.821 kb on + strand, within GFF3490at 312.821 kb on + strand, within GFF3490at 312.821 kb on + strand, within GFF3490at 312.821 kb on + strand, within GFF3490at 312.821 kb on + strand, within GFF3490at 312.821 kb on + strand, within GFF3490at 312.821 kb on + strand, within GFF3490at 312.821 kb on + strand, within GFF3490at 312.821 kb on + strand, within GFF3490at 312.821 kb on + strand, within GFF3490at 312.821 kb on + strand, within GFF3490at 312.821 kb on + strand, within GFF3490at 312.822 kb on - strand, within GFF3490at 312.822 kb on - strand, within GFF3490at 312.822 kb on - strand, within GFF3490at 312.822 kb on - strand, within GFF3490at 312.822 kb on - strand, within GFF3490at 312.822 kb on - strand, within GFF3490at 312.822 kb on - strand, within GFF3490at 312.822 kb on - strand, within GFF3490at 312.822 kb on - strand, within GFF3490at 312.822 kb on - strand, within GFF3490at 312.822 kb on - strand, within GFF3490at 312.822 kb on - strand, within GFF3490at 312.822 kb on - strand, within GFF3490at 312.822 kb on - strand, within GFF3490at 312.896 kb on + strand, within GFF3490at 312.896 kb on + strand, within GFF3490at 312.896 kb on + strand, within GFF3490at 312.896 kb on + strand, within GFF3490at 312.896 kb on + strand, within GFF3490at 312.896 kb on + strand, within GFF3490at 312.897 kb on - strand, within GFF3490at 312.897 kb on - strand, within GFF3490at 312.897 kb on - strand, within GFF3490at 312.897 kb on - strand, within GFF3490at 312.897 kb on - strand, within GFF3490at 312.897 kb on - strand, within GFF3490at 312.897 kb on - strand, within GFF3490at 312.897 kb on - strand, within GFF3490at 312.897 kb on - strand, within GFF3490

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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310,214 + GFF3487 0.48 -0.8
310,214 + GFF3487 0.48 -0.4
310,214 + GFF3487 0.48 -1.9
310,214 + GFF3487 0.48 -1.3
310,215 - GFF3487 0.48 -0.6
310,215 - GFF3487 0.48 +1.9
310,215 - GFF3487 0.48 -0.6
310,215 - GFF3487 0.48 +0.5
310,250 + GFF3487 0.51 +1.0
310,250 + GFF3487 0.51 -0.3
310,250 + GFF3487 0.51 -0.8
310,250 + GFF3487 0.51 -0.4
310,251 - GFF3487 0.51 +0.2
310,316 + GFF3487 0.56 +1.1
310,316 + GFF3487 0.56 +0.1
310,316 + GFF3487 0.56 -0.0
310,316 + GFF3487 0.56 +0.9
310,316 + GFF3487 0.56 +0.9
310,317 - GFF3487 0.56 -0.2
310,317 - GFF3487 0.56 -0.4
310,317 - GFF3487 0.56 -0.8
310,317 - GFF3487 0.56 -0.4
310,358 + GFF3487 0.59 +1.3
310,358 + GFF3487 0.59 +0.4
310,358 + GFF3487 0.59 +1.3
310,358 + GFF3487 0.59 -0.1
310,358 + GFF3487 0.59 -0.9
310,359 - GFF3487 0.59 -1.3
310,359 - GFF3487 0.59 -0.1
310,378 + GFF3487 0.61 -2.2
310,502 + GFF3487 0.70 -0.1
310,502 + GFF3487 0.70 -0.6
310,502 + GFF3487 0.70 +0.2
310,502 + GFF3487 0.70 +0.3
310,502 + GFF3487 0.70 -1.3
310,502 + GFF3487 0.70 -0.3
310,502 + GFF3487 0.70 -0.2
310,502 + GFF3487 0.70 +0.4
310,503 - GFF3487 0.70 +0.2
310,503 - GFF3487 0.70 +0.4
310,503 - GFF3487 0.70 +1.9
310,503 - GFF3487 0.70 -1.1
310,503 - GFF3487 0.70 +0.3
310,503 - GFF3487 0.70 -0.7
310,503 - GFF3487 0.70 +0.4
310,539 - GFF3487 0.73 -0.1
310,768 + GFF3487 0.90 -0.9
310,768 + GFF3487 0.90 -0.7
310,769 - +0.9
310,826 + +0.3
310,933 + -0.0
310,934 - +1.9
310,934 - -0.7
310,934 - +0.7
310,962 - -0.1
310,962 - -0.6
311,020 + +0.3
311,020 + -0.2
311,020 + -0.7
311,020 + -0.6
311,020 + -0.5
311,020 + +0.6
311,020 + -0.1
311,021 - -1.5
311,021 - -0.3
311,021 - -1.4
311,021 - -0.7
311,021 - -1.5
311,021 - -0.7
311,021 - -0.5
311,124 - -1.0
311,124 - -0.7
311,124 - +0.0
311,153 + +0.1
311,154 - -0.1
311,154 - +2.2
311,154 - +0.3
311,154 - +0.2
311,355 - GFF3488 0.26 +0.1
311,540 + GFF3488 0.51 -0.7
311,540 + GFF3488 0.51 -1.7
311,540 + GFF3488 0.51 +0.2
311,540 + GFF3488 0.51 -0.6
311,540 + GFF3488 0.51 +0.5
311,540 + GFF3488 0.51 +1.9
311,541 - GFF3488 0.51 -0.5
311,541 - GFF3488 0.51 -0.9
311,541 - GFF3488 0.51 +0.1
311,549 + GFF3488 0.52 +0.5
311,549 + GFF3488 0.52 -0.8
311,550 - GFF3488 0.52 -1.3
311,550 - GFF3488 0.52 +0.9
311,550 - GFF3488 0.52 +0.8
311,550 - GFF3488 0.52 +0.1
311,550 - GFF3488 0.52 -0.1
311,822 + GFF3488 0.89 +0.3
311,822 + GFF3488 0.89 +1.1
311,822 + GFF3488 0.89 +0.2
311,822 + GFF3488 0.89 +0.8
311,823 - GFF3488 0.90 +0.4
311,823 - GFF3488 0.90 +0.5
311,823 - GFF3488 0.90 -0.4
311,823 - GFF3488 0.90 -1.3
311,823 - GFF3488 0.90 +0.0
311,823 - GFF3488 0.90 -0.5
311,903 + -1.1
311,903 + +0.9
311,903 + +0.2
311,903 + -0.3
311,904 - +1.7
311,904 - -0.4
311,904 - -0.3
311,904 - +0.9
311,917 + -0.7
311,918 - -0.4
311,918 - +0.5
311,973 + -1.2
311,974 - -0.2
312,151 + GFF3489 0.27 -0.1
312,151 + GFF3489 0.27 -0.1
312,151 + GFF3489 0.27 +1.0
312,151 + GFF3489 0.27 +0.3
312,151 + GFF3489 0.27 -0.1
312,151 + GFF3489 0.27 +0.0
312,151 + GFF3489 0.27 -0.3
312,151 + GFF3489 0.27 +0.1
312,151 + GFF3489 0.27 +0.0
312,151 + GFF3489 0.27 -0.7
312,151 + GFF3489 0.27 +0.1
312,151 + GFF3489 0.27 -1.0
312,151 + GFF3489 0.27 +0.1
312,151 + GFF3489 0.27 +1.4
312,152 - GFF3489 0.27 -0.1
312,152 - GFF3489 0.27 +0.8
312,152 - GFF3489 0.27 -1.8
312,152 - GFF3489 0.27 +0.2
312,152 - GFF3489 0.27 -0.9
312,152 - GFF3489 0.27 -0.9
312,152 - GFF3489 0.27 -1.0
312,152 - GFF3489 0.27 -0.8
312,373 + GFF3489 0.63 +0.5
312,374 - GFF3489 0.63 -0.4
312,374 - GFF3489 0.63 +0.6
312,374 - GFF3489 0.63 +0.5
312,478 + GFF3489 0.80 +1.5
312,478 + GFF3489 0.80 +0.5
312,478 + GFF3489 0.80 -0.5
312,478 + GFF3489 0.80 -0.6
312,478 + GFF3489 0.80 -0.5
312,478 + GFF3489 0.80 -0.4
312,478 + GFF3489 0.80 -1.6
312,478 + GFF3489 0.80 +0.7
312,478 + GFF3489 0.80 +0.4
312,478 + GFF3489 0.80 -0.5
312,478 + GFF3489 0.80 -0.2
312,479 - GFF3489 0.80 -0.5
312,479 - GFF3489 0.80 +1.6
312,479 - GFF3489 0.80 -0.4
312,479 - GFF3489 0.80 -0.3
312,479 - GFF3489 0.80 -0.2
312,479 - GFF3489 0.80 -1.0
312,479 - GFF3489 0.80 +3.5
312,479 - GFF3489 0.80 -0.4
312,479 - GFF3489 0.80 -1.4
312,479 - GFF3489 0.80 +0.9
312,479 - GFF3489 0.80 +0.1
312,479 - GFF3489 0.80 -0.8
312,479 - GFF3489 0.80 +0.4
312,479 - GFF3489 0.80 -0.5
312,818 + GFF3490 0.13 +0.2
312,818 + GFF3490 0.13 -0.1
312,818 + GFF3490 0.13 -1.8
312,818 + GFF3490 0.13 +1.1
312,818 + GFF3490 0.13 -0.3
312,819 - GFF3490 0.14 -1.1
312,819 - GFF3490 0.14 -0.7
312,819 - GFF3490 0.14 +1.3
312,821 + GFF3490 0.14 -0.5
312,821 + GFF3490 0.14 -0.0
312,821 + GFF3490 0.14 -0.7
312,821 + GFF3490 0.14 -0.3
312,821 + GFF3490 0.14 -0.6
312,821 + GFF3490 0.14 -1.8
312,821 + GFF3490 0.14 -0.0
312,821 + GFF3490 0.14 -0.7
312,821 + GFF3490 0.14 +0.9
312,821 + GFF3490 0.14 -0.1
312,821 + GFF3490 0.14 -0.7
312,821 + GFF3490 0.14 -1.3
312,821 + GFF3490 0.14 +0.2
312,821 + GFF3490 0.14 -0.2
312,821 + GFF3490 0.14 -0.5
312,821 + GFF3490 0.14 +1.0
312,821 + GFF3490 0.14 +1.6
312,821 + GFF3490 0.14 -1.0
312,821 + GFF3490 0.14 +0.4
312,821 + GFF3490 0.14 -0.7
312,821 + GFF3490 0.14 +0.7
312,821 + GFF3490 0.14 -0.7
312,821 + GFF3490 0.14 +0.9
312,821 + GFF3490 0.14 +0.3
312,821 + GFF3490 0.14 +1.1
312,821 + GFF3490 0.14 -1.3
312,822 - GFF3490 0.14 -0.1
312,822 - GFF3490 0.14 +0.4
312,822 - GFF3490 0.14 -0.1
312,822 - GFF3490 0.14 -0.5
312,822 - GFF3490 0.14 -0.2
312,822 - GFF3490 0.14 +0.9
312,822 - GFF3490 0.14 -0.8
312,822 - GFF3490 0.14 +1.3
312,822 - GFF3490 0.14 -0.1
312,822 - GFF3490 0.14 +0.7
312,822 - GFF3490 0.14 -0.1
312,822 - GFF3490 0.14 -0.3
312,822 - GFF3490 0.14 +0.5
312,822 - GFF3490 0.14 +0.7
312,896 + GFF3490 0.19 +0.4
312,896 + GFF3490 0.19 +0.7
312,896 + GFF3490 0.19 -0.4
312,896 + GFF3490 0.19 +0.1
312,896 + GFF3490 0.19 -0.4
312,896 + GFF3490 0.19 +0.5
312,897 - GFF3490 0.19 -0.3
312,897 - GFF3490 0.19 +0.3
312,897 - GFF3490 0.19 +0.1
312,897 - GFF3490 0.19 -1.8
312,897 - GFF3490 0.19 -0.6
312,897 - GFF3490 0.19 -0.8
312,897 - GFF3490 0.19 +0.2
312,897 - GFF3490 0.19 +0.1
312,897 - GFF3490 0.19 +1.0

Or see this region's nucleotide sequence