Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3462 and GFF3463 are separated by 4 nucleotides GFF3463 and GFF3464 are separated by 5 nucleotides GFF3464 and GFF3465 are separated by 63 nucleotides GFF3465 and GFF3466 are separated by 33 nucleotides GFF3466 and GFF3467 overlap by 4 nucleotides
GFF3462 - Urea ABC transporter, permease protein UrtC, at 283,791 to 284,846
GFF3462
GFF3463 - Urea ABC transporter, permease protein UrtB, at 284,851 to 285,753
GFF3463
GFF3464 - Urea ABC transporter, substrate-binding protein UrtA, at 285,759 to 286,952
GFF3464
GFF3465 - hypothetical protein, at 287,016 to 287,297
GFF3465
GFF3466 - FIG00932805: hypothetical protein, at 287,331 to 287,825
GFF3466
GFF3467 - Transcriptional regulator, LysR family, at 287,822 to 288,769
GFF3467
Position (kb) 285
286
287 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 284.894 kb on + strand at 284.894 kb on + strand at 284.895 kb on - strand at 284.895 kb on - strand at 284.895 kb on - strand at 284.954 kb on + strand, within GFF3463 at 284.954 kb on + strand, within GFF3463 at 284.955 kb on - strand, within GFF3463 at 285.059 kb on + strand, within GFF3463 at 285.060 kb on - strand, within GFF3463 at 285.060 kb on - strand, within GFF3463 at 285.060 kb on - strand, within GFF3463 at 285.060 kb on - strand, within GFF3463 at 285.060 kb on - strand, within GFF3463 at 285.060 kb on - strand, within GFF3463 at 285.254 kb on + strand, within GFF3463 at 285.398 kb on + strand, within GFF3463 at 285.461 kb on + strand, within GFF3463 at 285.495 kb on - strand, within GFF3463 at 285.545 kb on + strand, within GFF3463 at 285.546 kb on - strand, within GFF3463 at 285.546 kb on - strand, within GFF3463 at 285.596 kb on + strand, within GFF3463 at 285.596 kb on + strand, within GFF3463 at 285.597 kb on - strand, within GFF3463 at 285.605 kb on + strand, within GFF3463 at 285.606 kb on - strand, within GFF3463 at 285.883 kb on - strand, within GFF3464 at 285.883 kb on - strand, within GFF3464 at 285.989 kb on - strand, within GFF3464 at 286.000 kb on + strand, within GFF3464 at 286.001 kb on - strand, within GFF3464 at 286.001 kb on - strand, within GFF3464 at 286.001 kb on - strand, within GFF3464 at 286.042 kb on + strand, within GFF3464 at 286.042 kb on + strand, within GFF3464 at 286.043 kb on - strand, within GFF3464 at 286.047 kb on - strand, within GFF3464 at 286.047 kb on - strand, within GFF3464 at 286.118 kb on - strand, within GFF3464 at 286.120 kb on + strand, within GFF3464 at 286.120 kb on + strand, within GFF3464 at 286.228 kb on + strand, within GFF3464 at 286.229 kb on - strand, within GFF3464 at 286.229 kb on - strand, within GFF3464 at 286.264 kb on + strand, within GFF3464 at 286.264 kb on + strand, within GFF3464 at 286.264 kb on + strand, within GFF3464 at 286.264 kb on + strand, within GFF3464 at 286.265 kb on - strand, within GFF3464 at 286.265 kb on - strand, within GFF3464 at 286.408 kb on + strand, within GFF3464 at 286.408 kb on + strand, within GFF3464 at 286.414 kb on + strand, within GFF3464 at 286.414 kb on + strand, within GFF3464 at 286.415 kb on - strand, within GFF3464 at 286.540 kb on + strand, within GFF3464 at 286.540 kb on + strand, within GFF3464 at 286.540 kb on + strand, within GFF3464 at 286.541 kb on - strand, within GFF3464 at 286.543 kb on + strand, within GFF3464 at 287.180 kb on + strand, within GFF3465 at 287.181 kb on - strand, within GFF3465 at 287.222 kb on + strand, within GFF3465 at 287.222 kb on + strand, within GFF3465 at 287.222 kb on + strand, within GFF3465 at 287.223 kb on - strand, within GFF3465 at 287.223 kb on - strand, within GFF3465 at 287.223 kb on - strand, within GFF3465 at 287.223 kb on - strand, within GFF3465 at 287.223 kb on - strand, within GFF3465 at 287.232 kb on - strand, within GFF3465 at 287.282 kb on + strand at 287.282 kb on + strand at 287.282 kb on + strand at 287.282 kb on + strand at 287.282 kb on + strand at 287.282 kb on + strand at 287.283 kb on - strand at 287.283 kb on - strand at 287.283 kb on - strand at 287.283 kb on - strand at 287.283 kb on - strand at 287.322 kb on + strand at 287.322 kb on + strand at 287.443 kb on + strand, within GFF3466 at 287.443 kb on + strand, within GFF3466 at 287.443 kb on + strand, within GFF3466 at 287.443 kb on + strand, within GFF3466 at 287.443 kb on + strand, within GFF3466 at 287.827 kb on - strand at 287.839 kb on + strand at 287.839 kb on + strand at 287.892 kb on + strand at 287.893 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 284,894 + -0.5 284,894 + -0.4 284,895 - +0.1 284,895 - +0.6 284,895 - +0.3 284,954 + GFF3463 0.11 -0.7 284,954 + GFF3463 0.11 -0.1 284,955 - GFF3463 0.12 +0.4 285,059 + GFF3463 0.23 +0.6 285,060 - GFF3463 0.23 -2.8 285,060 - GFF3463 0.23 -0.0 285,060 - GFF3463 0.23 -0.5 285,060 - GFF3463 0.23 -0.5 285,060 - GFF3463 0.23 -1.3 285,060 - GFF3463 0.23 -1.8 285,254 + GFF3463 0.45 +0.5 285,398 + GFF3463 0.61 -2.1 285,461 + GFF3463 0.68 +0.1 285,495 - GFF3463 0.71 -2.3 285,545 + GFF3463 0.77 -1.3 285,546 - GFF3463 0.77 -0.1 285,546 - GFF3463 0.77 +0.0 285,596 + GFF3463 0.83 -0.1 285,596 + GFF3463 0.83 -0.1 285,597 - GFF3463 0.83 -0.7 285,605 + GFF3463 0.83 -0.4 285,606 - GFF3463 0.84 +1.5 285,883 - GFF3464 0.10 -0.3 285,883 - GFF3464 0.10 +1.0 285,989 - GFF3464 0.19 -0.8 286,000 + GFF3464 0.20 -0.4 286,001 - GFF3464 0.20 -0.2 286,001 - GFF3464 0.20 +0.3 286,001 - GFF3464 0.20 -0.6 286,042 + GFF3464 0.24 +0.5 286,042 + GFF3464 0.24 +0.9 286,043 - GFF3464 0.24 -1.2 286,047 - GFF3464 0.24 -0.7 286,047 - GFF3464 0.24 -1.0 286,118 - GFF3464 0.30 +0.0 286,120 + GFF3464 0.30 +0.9 286,120 + GFF3464 0.30 +0.7 286,228 + GFF3464 0.39 -0.2 286,229 - GFF3464 0.39 -0.1 286,229 - GFF3464 0.39 -0.1 286,264 + GFF3464 0.42 -0.9 286,264 + GFF3464 0.42 +0.4 286,264 + GFF3464 0.42 -1.3 286,264 + GFF3464 0.42 -0.4 286,265 - GFF3464 0.42 -0.9 286,265 - GFF3464 0.42 -0.1 286,408 + GFF3464 0.54 -0.4 286,408 + GFF3464 0.54 -0.3 286,414 + GFF3464 0.55 -1.1 286,414 + GFF3464 0.55 -0.4 286,415 - GFF3464 0.55 -1.7 286,540 + GFF3464 0.65 -0.3 286,540 + GFF3464 0.65 +1.3 286,540 + GFF3464 0.65 +0.5 286,541 - GFF3464 0.65 -0.4 286,543 + GFF3464 0.66 -0.7 287,180 + GFF3465 0.58 -0.5 287,181 - GFF3465 0.59 -0.0 287,222 + GFF3465 0.73 -1.7 287,222 + GFF3465 0.73 -0.4 287,222 + GFF3465 0.73 -1.0 287,223 - GFF3465 0.73 +0.3 287,223 - GFF3465 0.73 +0.3 287,223 - GFF3465 0.73 +0.0 287,223 - GFF3465 0.73 -0.4 287,223 - GFF3465 0.73 +0.4 287,232 - GFF3465 0.77 +0.7 287,282 + -0.2 287,282 + +2.6 287,282 + +0.3 287,282 + +0.5 287,282 + -1.1 287,282 + -1.1 287,283 - +1.1 287,283 - +1.6 287,283 - -0.2 287,283 - -0.0 287,283 - +0.6 287,322 + -0.9 287,322 + -0.3 287,443 + GFF3466 0.23 -1.2 287,443 + GFF3466 0.23 -0.2 287,443 + GFF3466 0.23 -0.4 287,443 + GFF3466 0.23 +0.1 287,443 + GFF3466 0.23 +0.6 287,827 - -0.3 287,839 + +0.8 287,839 + -0.9 287,892 + -0.0 287,893 - -0.3
Or see this region's nucleotide sequence