Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3424 and GFF3425 are separated by 104 nucleotides GFF3425 and GFF3426 overlap by 4 nucleotides GFF3426 and GFF3427 overlap by 4 nucleotides GFF3427 and GFF3428 are separated by 4 nucleotides
GFF3424 - FIG00443816: hypothetical protein, at 248,999 to 249,709
GFF3424
GFF3425 - no description, at 249,814 to 250,161
GFF3425
GFF3426 - Predicted kinase, at 250,158 to 250,973
GFF3426
GFF3427 - FIG01006093: hypothetical protein, at 250,970 to 251,479
GFF3427
GFF3428 - 2-oxo-hepta-3-ene-1,7-dioic acid hydratase (EC 4.2.-.-), at 251,484 to 252,296
GFF3428
Position (kb) 250
251 Strain fitness (log2 ratio) -2
-1
0
1 at 249.303 kb on + strand, within GFF3424 at 249.303 kb on + strand, within GFF3424 at 249.303 kb on + strand, within GFF3424 at 249.304 kb on - strand, within GFF3424 at 249.304 kb on - strand, within GFF3424 at 249.304 kb on - strand, within GFF3424 at 249.319 kb on - strand, within GFF3424 at 249.375 kb on + strand, within GFF3424 at 249.376 kb on - strand, within GFF3424 at 249.456 kb on + strand, within GFF3424 at 249.456 kb on + strand, within GFF3424 at 249.456 kb on + strand, within GFF3424 at 249.457 kb on - strand, within GFF3424 at 249.507 kb on + strand, within GFF3424 at 249.507 kb on + strand, within GFF3424 at 249.507 kb on + strand, within GFF3424 at 249.508 kb on - strand, within GFF3424 at 249.508 kb on - strand, within GFF3424 at 249.513 kb on + strand, within GFF3424 at 249.579 kb on + strand, within GFF3424 at 249.579 kb on + strand, within GFF3424 at 249.579 kb on + strand, within GFF3424 at 249.579 kb on + strand, within GFF3424 at 249.579 kb on + strand, within GFF3424 at 249.579 kb on + strand, within GFF3424 at 249.579 kb on + strand, within GFF3424 at 249.579 kb on + strand, within GFF3424 at 249.580 kb on - strand, within GFF3424 at 249.580 kb on - strand, within GFF3424 at 249.580 kb on - strand, within GFF3424 at 249.580 kb on - strand, within GFF3424 at 249.580 kb on - strand, within GFF3424 at 249.580 kb on - strand, within GFF3424 at 250.057 kb on + strand, within GFF3425 at 250.057 kb on + strand, within GFF3425 at 250.058 kb on - strand, within GFF3425 at 250.269 kb on + strand, within GFF3426 at 250.269 kb on + strand, within GFF3426 at 250.569 kb on + strand, within GFF3426 at 250.569 kb on + strand, within GFF3426 at 251.282 kb on + strand, within GFF3427 at 251.283 kb on - strand, within GFF3427 at 251.283 kb on - strand, within GFF3427 at 251.436 kb on + strand at 251.444 kb on + strand at 251.445 kb on - strand at 251.445 kb on - strand at 251.511 kb on + strand at 251.512 kb on - strand at 251.637 kb on + strand, within GFF3428 at 251.676 kb on + strand, within GFF3428 at 251.685 kb on + strand, within GFF3428 at 251.685 kb on + strand, within GFF3428 at 251.685 kb on + strand, within GFF3428 at 251.685 kb on + strand, within GFF3428 at 251.685 kb on + strand, within GFF3428 at 251.685 kb on + strand, within GFF3428 at 251.685 kb on + strand, within GFF3428 at 251.685 kb on + strand, within GFF3428 at 251.685 kb on + strand, within GFF3428 at 251.686 kb on - strand, within GFF3428 at 251.686 kb on - strand, within GFF3428 at 251.686 kb on - strand, within GFF3428
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 249,303 + GFF3424 0.43 -0.0 249,303 + GFF3424 0.43 +0.3 249,303 + GFF3424 0.43 -0.8 249,304 - GFF3424 0.43 -0.4 249,304 - GFF3424 0.43 -0.2 249,304 - GFF3424 0.43 -0.1 249,319 - GFF3424 0.45 +0.1 249,375 + GFF3424 0.53 -0.2 249,376 - GFF3424 0.53 +0.0 249,456 + GFF3424 0.64 -0.5 249,456 + GFF3424 0.64 -0.8 249,456 + GFF3424 0.64 +0.6 249,457 - GFF3424 0.64 -0.3 249,507 + GFF3424 0.71 -0.1 249,507 + GFF3424 0.71 -0.0 249,507 + GFF3424 0.71 -0.8 249,508 - GFF3424 0.72 -0.5 249,508 - GFF3424 0.72 +0.9 249,513 + GFF3424 0.72 +1.1 249,579 + GFF3424 0.82 -1.1 249,579 + GFF3424 0.82 -0.2 249,579 + GFF3424 0.82 -0.3 249,579 + GFF3424 0.82 +0.3 249,579 + GFF3424 0.82 +0.0 249,579 + GFF3424 0.82 -0.1 249,579 + GFF3424 0.82 +0.0 249,579 + GFF3424 0.82 -0.2 249,580 - GFF3424 0.82 +0.8 249,580 - GFF3424 0.82 -0.1 249,580 - GFF3424 0.82 -0.1 249,580 - GFF3424 0.82 +0.2 249,580 - GFF3424 0.82 +1.0 249,580 - GFF3424 0.82 -0.8 250,057 + GFF3425 0.70 -2.3 250,057 + GFF3425 0.70 -0.2 250,058 - GFF3425 0.70 -0.1 250,269 + GFF3426 0.14 -0.7 250,269 + GFF3426 0.14 -0.1 250,569 + GFF3426 0.50 -0.8 250,569 + GFF3426 0.50 -2.2 251,282 + GFF3427 0.61 -0.7 251,283 - GFF3427 0.61 -0.0 251,283 - GFF3427 0.61 +1.1 251,436 + -1.5 251,444 + -0.6 251,445 - +0.2 251,445 - +0.4 251,511 + -0.5 251,512 - -0.3 251,637 + GFF3428 0.19 -0.1 251,676 + GFF3428 0.24 -2.3 251,685 + GFF3428 0.25 +0.3 251,685 + GFF3428 0.25 -1.1 251,685 + GFF3428 0.25 -0.7 251,685 + GFF3428 0.25 +0.1 251,685 + GFF3428 0.25 -0.3 251,685 + GFF3428 0.25 -0.2 251,685 + GFF3428 0.25 +0.2 251,685 + GFF3428 0.25 +0.0 251,685 + GFF3428 0.25 -0.1 251,686 - GFF3428 0.25 +0.6 251,686 - GFF3428 0.25 -0.4 251,686 - GFF3428 0.25 -0.6
Or see this region's nucleotide sequence