Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3397 and GFF3398 overlap by 4 nucleotides GFF3398 and GFF3399 are separated by 142 nucleotides
GFF3397 - Benzoate ABC transporter, substrate-binding protein, at 219,681 to 220,853
GFF3397
GFF3398 - benzoate degradation ring-cleavage hydrolase, at 220,850 to 221,659
GFF3398
GFF3399 - Benzoate--CoA ligase (EC 6.2.1.25), at 221,802 to 223,349
GFF3399
Position (kb) 220
221
222 Strain fitness (log2 ratio) -2
-1
0
1 at 219.906 kb on + strand, within GFF3397 at 219.906 kb on + strand, within GFF3397 at 219.906 kb on + strand, within GFF3397 at 219.907 kb on - strand, within GFF3397 at 219.907 kb on - strand, within GFF3397 at 219.925 kb on + strand, within GFF3397 at 219.940 kb on + strand, within GFF3397 at 219.940 kb on + strand, within GFF3397 at 219.973 kb on + strand, within GFF3397 at 220.022 kb on - strand, within GFF3397 at 220.180 kb on + strand, within GFF3397 at 220.180 kb on + strand, within GFF3397 at 220.181 kb on - strand, within GFF3397 at 220.330 kb on + strand, within GFF3397 at 220.396 kb on + strand, within GFF3397 at 220.642 kb on + strand, within GFF3397 at 220.642 kb on + strand, within GFF3397 at 220.643 kb on - strand, within GFF3397 at 220.687 kb on + strand, within GFF3397 at 220.729 kb on + strand, within GFF3397 at 220.729 kb on + strand, within GFF3397 at 220.729 kb on + strand, within GFF3397 at 220.730 kb on - strand, within GFF3397 at 220.730 kb on - strand, within GFF3397 at 220.730 kb on - strand, within GFF3397 at 221.014 kb on - strand, within GFF3398 at 221.188 kb on - strand, within GFF3398 at 221.292 kb on + strand, within GFF3398 at 221.292 kb on + strand, within GFF3398 at 221.292 kb on + strand, within GFF3398 at 221.292 kb on + strand, within GFF3398 at 221.293 kb on - strand, within GFF3398 at 221.897 kb on - strand at 221.902 kb on + strand at 221.902 kb on + strand at 221.903 kb on - strand at 221.903 kb on - strand at 222.085 kb on + strand, within GFF3399 at 222.085 kb on + strand, within GFF3399 at 222.085 kb on + strand, within GFF3399 at 222.085 kb on + strand, within GFF3399 at 222.085 kb on + strand, within GFF3399 at 222.086 kb on - strand, within GFF3399 at 222.086 kb on - strand, within GFF3399 at 222.086 kb on - strand, within GFF3399 at 222.086 kb on - strand, within GFF3399 at 222.086 kb on - strand, within GFF3399 at 222.086 kb on - strand, within GFF3399 at 222.086 kb on - strand, within GFF3399 at 222.086 kb on - strand, within GFF3399 at 222.086 kb on - strand, within GFF3399 at 222.127 kb on + strand, within GFF3399 at 222.127 kb on + strand, within GFF3399 at 222.128 kb on - strand, within GFF3399 at 222.137 kb on - strand, within GFF3399 at 222.157 kb on + strand, within GFF3399 at 222.158 kb on - strand, within GFF3399 at 222.158 kb on - strand, within GFF3399 at 222.223 kb on + strand, within GFF3399 at 222.224 kb on - strand, within GFF3399 at 222.253 kb on + strand, within GFF3399 at 222.253 kb on + strand, within GFF3399 at 222.253 kb on + strand, within GFF3399 at 222.253 kb on + strand, within GFF3399 at 222.254 kb on - strand, within GFF3399 at 222.254 kb on - strand, within GFF3399
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 219,906 + GFF3397 0.19 -1.6 219,906 + GFF3397 0.19 +0.9 219,906 + GFF3397 0.19 -1.0 219,907 - GFF3397 0.19 -0.8 219,907 - GFF3397 0.19 -0.5 219,925 + GFF3397 0.21 -1.4 219,940 + GFF3397 0.22 -1.3 219,940 + GFF3397 0.22 -0.6 219,973 + GFF3397 0.25 -1.3 220,022 - GFF3397 0.29 +1.1 220,180 + GFF3397 0.43 -0.1 220,180 + GFF3397 0.43 -0.1 220,181 - GFF3397 0.43 -0.4 220,330 + GFF3397 0.55 +0.1 220,396 + GFF3397 0.61 -0.4 220,642 + GFF3397 0.82 -0.3 220,642 + GFF3397 0.82 +1.2 220,643 - GFF3397 0.82 -0.1 220,687 + GFF3397 0.86 +0.2 220,729 + GFF3397 0.89 -0.4 220,729 + GFF3397 0.89 +0.2 220,729 + GFF3397 0.89 +0.3 220,730 - GFF3397 0.89 -0.1 220,730 - GFF3397 0.89 -0.4 220,730 - GFF3397 0.89 -0.1 221,014 - GFF3398 0.20 +0.9 221,188 - GFF3398 0.42 -0.5 221,292 + GFF3398 0.55 -1.8 221,292 + GFF3398 0.55 -0.8 221,292 + GFF3398 0.55 -1.1 221,292 + GFF3398 0.55 -0.6 221,293 - GFF3398 0.55 -0.6 221,897 - +0.0 221,902 + -0.5 221,902 + -1.0 221,903 - -0.3 221,903 - -0.8 222,085 + GFF3399 0.18 +0.9 222,085 + GFF3399 0.18 -0.3 222,085 + GFF3399 0.18 +0.1 222,085 + GFF3399 0.18 -0.2 222,085 + GFF3399 0.18 +0.9 222,086 - GFF3399 0.18 -0.1 222,086 - GFF3399 0.18 -0.2 222,086 - GFF3399 0.18 -0.4 222,086 - GFF3399 0.18 +0.7 222,086 - GFF3399 0.18 -0.5 222,086 - GFF3399 0.18 -1.9 222,086 - GFF3399 0.18 -0.2 222,086 - GFF3399 0.18 -0.1 222,086 - GFF3399 0.18 -0.5 222,127 + GFF3399 0.21 +0.3 222,127 + GFF3399 0.21 -0.7 222,128 - GFF3399 0.21 -1.3 222,137 - GFF3399 0.22 +0.9 222,157 + GFF3399 0.23 -1.2 222,158 - GFF3399 0.23 -0.2 222,158 - GFF3399 0.23 -1.1 222,223 + GFF3399 0.27 -2.0 222,224 - GFF3399 0.27 -0.2 222,253 + GFF3399 0.29 +0.2 222,253 + GFF3399 0.29 +0.9 222,253 + GFF3399 0.29 -0.8 222,253 + GFF3399 0.29 +0.9 222,254 - GFF3399 0.29 -0.6 222,254 - GFF3399 0.29 -0.1
Or see this region's nucleotide sequence