Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3351 and GFF3352 overlap by 17 nucleotides GFF3352 and GFF3353 overlap by 4 nucleotides GFF3353 and GFF3354 are separated by 31 nucleotides GFF3354 and GFF3355 are separated by 19 nucleotides
GFF3351 - FIG00458971: hypothetical protein, at 174,393 to 174,950
GFF3351
GFF3352 - Branched-chain amino acid ABC transporter, ATP-binding protein LivG (TC 3.A.1.4.1), at 174,934 to 175,776
GFF3352
GFF3353 - Branched-chain amino acid ABC transporter, ATP-binding protein LivF (TC 3.A.1.4.1), at 175,773 to 176,618
GFF3353
GFF3354 - FIG00537998: hypothetical protein, at 176,650 to 177,546
GFF3354
GFF3355 - no description, at 177,566 to 177,958
GFF3355
Position (kb) 175
176
177 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 174.780 kb on + strand, within GFF3351 at 175.435 kb on + strand, within GFF3352 at 175.436 kb on - strand, within GFF3352 at 175.729 kb on + strand at 175.730 kb on - strand at 175.730 kb on - strand at 175.921 kb on - strand, within GFF3353 at 176.394 kb on + strand, within GFF3353 at 176.395 kb on - strand, within GFF3353 at 176.395 kb on - strand, within GFF3353 at 176.502 kb on + strand, within GFF3353 at 176.502 kb on + strand, within GFF3353 at 176.502 kb on + strand, within GFF3353 at 176.502 kb on + strand, within GFF3353 at 176.503 kb on - strand, within GFF3353 at 176.503 kb on - strand, within GFF3353 at 176.503 kb on - strand, within GFF3353 at 176.503 kb on - strand, within GFF3353 at 176.570 kb on - strand at 176.580 kb on + strand at 176.581 kb on - strand at 176.803 kb on + strand, within GFF3354 at 176.803 kb on + strand, within GFF3354 at 176.804 kb on - strand, within GFF3354 at 176.804 kb on - strand, within GFF3354 at 176.804 kb on - strand, within GFF3354 at 176.804 kb on - strand, within GFF3354 at 177.383 kb on - strand, within GFF3354 at 177.544 kb on + strand at 177.545 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 174,780 + GFF3351 0.69 +0.3 175,435 + GFF3352 0.59 -0.9 175,436 - GFF3352 0.60 +0.1 175,729 + -1.3 175,730 - -0.1 175,730 - -0.2 175,921 - GFF3353 0.17 -0.3 176,394 + GFF3353 0.73 +0.5 176,395 - GFF3353 0.74 -0.2 176,395 - GFF3353 0.74 +1.0 176,502 + GFF3353 0.86 +0.6 176,502 + GFF3353 0.86 +0.2 176,502 + GFF3353 0.86 -1.2 176,502 + GFF3353 0.86 -0.4 176,503 - GFF3353 0.86 +0.1 176,503 - GFF3353 0.86 -0.5 176,503 - GFF3353 0.86 -2.1 176,503 - GFF3353 0.86 +1.3 176,570 - -0.6 176,580 + +1.9 176,581 - +2.9 176,803 + GFF3354 0.17 -0.3 176,803 + GFF3354 0.17 +0.0 176,804 - GFF3354 0.17 -0.6 176,804 - GFF3354 0.17 +0.3 176,804 - GFF3354 0.17 +0.7 176,804 - GFF3354 0.17 -1.8 177,383 - GFF3354 0.82 +0.6 177,544 + +0.4 177,545 - -0.8
Or see this region's nucleotide sequence