Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3320 and GFF3321 overlap by 4 nucleotides GFF3321 and GFF3322 are separated by 34 nucleotides GFF3322 and GFF3323 are separated by 181 nucleotides GFF3323 and GFF3324 are separated by 7 nucleotides
GFF3320 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179), at 147,272 to 148,555
GFF3320
GFF3321 - Acyl carrier protein, at 148,552 to 148,857
GFF3321
GFF3322 - hypothetical protein, at 148,892 to 149,752
GFF3322
GFF3323 - Tricarboxylate transport transcriptional regulator TctD, at 149,934 to 150,578
GFF3323
GFF3324 - hypothetical protein, at 150,586 to 151,980
GFF3324
Position (kb) 148
149
150 Strain fitness (log2 ratio) -2
-1
0
1 at 148.143 kb on + strand, within GFF3320 at 148.144 kb on - strand, within GFF3320 at 148.560 kb on + strand at 148.561 kb on - strand at 148.899 kb on + strand at 148.899 kb on + strand at 148.900 kb on - strand at 148.900 kb on - strand at 149.001 kb on + strand, within GFF3322 at 149.001 kb on + strand, within GFF3322 at 149.002 kb on - strand, within GFF3322 at 149.002 kb on - strand, within GFF3322 at 149.002 kb on - strand, within GFF3322 at 149.002 kb on - strand, within GFF3322 at 149.002 kb on - strand, within GFF3322 at 149.277 kb on + strand, within GFF3322 at 149.295 kb on + strand, within GFF3322 at 149.322 kb on + strand, within GFF3322 at 149.322 kb on + strand, within GFF3322 at 149.322 kb on + strand, within GFF3322 at 149.322 kb on + strand, within GFF3322 at 149.322 kb on + strand, within GFF3322 at 149.322 kb on + strand, within GFF3322 at 149.323 kb on - strand, within GFF3322 at 149.323 kb on - strand, within GFF3322 at 149.323 kb on - strand, within GFF3322 at 149.323 kb on - strand, within GFF3322 at 149.323 kb on - strand, within GFF3322 at 149.583 kb on + strand, within GFF3322 at 149.584 kb on - strand, within GFF3322 at 149.613 kb on + strand, within GFF3322 at 149.789 kb on + strand at 149.790 kb on - strand at 149.790 kb on - strand at 149.790 kb on - strand at 149.790 kb on - strand at 149.790 kb on - strand at 149.790 kb on - strand at 149.790 kb on - strand at 149.800 kb on + strand at 149.800 kb on + strand at 149.800 kb on + strand at 149.801 kb on - strand at 149.801 kb on - strand at 149.801 kb on - strand at 149.868 kb on + strand at 150.555 kb on + strand at 150.555 kb on + strand at 150.725 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 148,143 + GFF3320 0.68 -0.3 148,144 - GFF3320 0.68 -0.1 148,560 + -0.3 148,561 - +0.3 148,899 + -0.2 148,899 + +0.1 148,900 - -1.1 148,900 - -0.3 149,001 + GFF3322 0.13 -0.4 149,001 + GFF3322 0.13 -1.0 149,002 - GFF3322 0.13 -1.0 149,002 - GFF3322 0.13 -1.1 149,002 - GFF3322 0.13 -0.1 149,002 - GFF3322 0.13 +1.3 149,002 - GFF3322 0.13 -0.4 149,277 + GFF3322 0.45 -0.9 149,295 + GFF3322 0.47 +0.2 149,322 + GFF3322 0.50 -0.5 149,322 + GFF3322 0.50 -1.4 149,322 + GFF3322 0.50 -1.8 149,322 + GFF3322 0.50 -1.1 149,322 + GFF3322 0.50 -0.0 149,322 + GFF3322 0.50 +0.3 149,323 - GFF3322 0.50 -1.4 149,323 - GFF3322 0.50 -0.8 149,323 - GFF3322 0.50 -0.0 149,323 - GFF3322 0.50 -2.4 149,323 - GFF3322 0.50 -0.7 149,583 + GFF3322 0.80 -1.3 149,584 - GFF3322 0.80 -0.2 149,613 + GFF3322 0.84 -0.8 149,789 + -1.8 149,790 - -0.1 149,790 - -0.1 149,790 - -1.4 149,790 - -0.6 149,790 - -0.7 149,790 - +0.3 149,790 - +0.1 149,800 + -0.9 149,800 + -0.9 149,800 + +1.5 149,801 - -0.1 149,801 - -0.8 149,801 - +1.2 149,868 + -0.2 150,555 + +0.3 150,555 + -1.3 150,725 - -0.5
Or see this region's nucleotide sequence