Strain Fitness in Variovorax sp. SCN45 around GFF332

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF331 and GFF332 are separated by 2 nucleotidesGFF332 and GFF333 are separated by 9 nucleotidesGFF333 and GFF334 overlap by 28 nucleotides GFF331 - Nucleoside ABC transporter, permease protein 2, at 365,735 to 366,658 GFF331 GFF332 - hypothetical protein, at 366,661 to 367,122 GFF332 GFF333 - hypothetical protein, at 367,132 to 367,584 GFF333 GFF334 - Transcriptional regulator, AraC family, at 367,557 to 368,390 GFF334 Position (kb) 366 367 368Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 365.729 kb on + strandat 365.912 kb on + strand, within GFF331at 365.912 kb on + strand, within GFF331at 365.912 kb on + strand, within GFF331at 365.912 kb on + strand, within GFF331at 365.913 kb on - strand, within GFF331at 365.913 kb on - strand, within GFF331at 365.992 kb on + strand, within GFF331at 365.992 kb on + strand, within GFF331at 365.992 kb on + strand, within GFF331at 366.062 kb on + strand, within GFF331at 366.062 kb on + strand, within GFF331at 366.063 kb on - strand, within GFF331at 366.063 kb on - strand, within GFF331at 366.063 kb on - strand, within GFF331at 366.063 kb on - strand, within GFF331at 366.218 kb on + strand, within GFF331at 366.219 kb on - strand, within GFF331at 366.542 kb on + strand, within GFF331at 366.551 kb on + strand, within GFF331at 366.551 kb on + strand, within GFF331at 366.551 kb on + strand, within GFF331at 366.551 kb on + strand, within GFF331at 366.551 kb on + strand, within GFF331at 366.551 kb on + strand, within GFF331at 366.552 kb on - strand, within GFF331at 366.552 kb on - strand, within GFF331at 366.552 kb on - strand, within GFF331at 366.552 kb on - strand, within GFF331at 366.552 kb on - strand, within GFF331at 366.566 kb on + strandat 366.567 kb on - strandat 366.567 kb on - strandat 366.671 kb on + strandat 366.672 kb on - strandat 366.758 kb on - strand, within GFF332at 366.758 kb on - strand, within GFF332at 366.835 kb on + strand, within GFF332at 366.835 kb on + strand, within GFF332at 366.835 kb on + strand, within GFF332at 366.835 kb on + strand, within GFF332at 366.835 kb on + strand, within GFF332at 366.836 kb on - strand, within GFF332at 366.877 kb on + strand, within GFF332at 366.877 kb on + strand, within GFF332at 366.877 kb on + strand, within GFF332at 366.877 kb on + strand, within GFF332at 366.878 kb on - strand, within GFF332at 366.878 kb on - strand, within GFF332at 367.093 kb on + strandat 367.121 kb on - strandat 367.421 kb on - strand, within GFF333at 367.548 kb on + strandat 367.548 kb on + strandat 367.548 kb on + strandat 367.548 kb on + strandat 367.548 kb on + strandat 367.548 kb on + strandat 367.548 kb on + strandat 367.548 kb on + strandat 367.548 kb on + strandat 367.548 kb on + strandat 367.548 kb on + strandat 367.549 kb on - strandat 367.549 kb on - strandat 367.549 kb on - strandat 367.549 kb on - strandat 367.549 kb on - strandat 367.549 kb on - strandat 367.549 kb on - strandat 367.549 kb on - strandat 367.549 kb on - strandat 367.549 kb on - strandat 367.549 kb on - strandat 367.552 kb on + strandat 367.552 kb on + strandat 367.552 kb on + strandat 367.552 kb on + strandat 367.553 kb on - strandat 367.553 kb on - strandat 367.553 kb on - strandat 367.553 kb on - strandat 367.553 kb on - strandat 367.553 kb on - strandat 367.553 kb on - strandat 367.553 kb on - strandat 367.582 kb on + strandat 367.582 kb on + strandat 367.645 kb on + strand, within GFF334at 367.646 kb on - strand, within GFF334at 367.646 kb on - strand, within GFF334at 367.843 kb on + strand, within GFF334at 367.843 kb on + strand, within GFF334at 367.844 kb on - strand, within GFF334at 367.844 kb on - strand, within GFF334at 367.844 kb on - strand, within GFF334at 367.844 kb on - strand, within GFF334

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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365,729 + -0.6
365,912 + GFF331 0.19 -1.0
365,912 + GFF331 0.19 -0.4
365,912 + GFF331 0.19 +0.7
365,912 + GFF331 0.19 -0.4
365,913 - GFF331 0.19 -0.5
365,913 - GFF331 0.19 +0.6
365,992 + GFF331 0.28 +0.4
365,992 + GFF331 0.28 -0.0
365,992 + GFF331 0.28 -1.2
366,062 + GFF331 0.35 -0.9
366,062 + GFF331 0.35 +2.2
366,063 - GFF331 0.35 -0.1
366,063 - GFF331 0.35 -0.3
366,063 - GFF331 0.35 +1.4
366,063 - GFF331 0.35 +2.4
366,218 + GFF331 0.52 -0.2
366,219 - GFF331 0.52 -1.5
366,542 + GFF331 0.87 +2.0
366,551 + GFF331 0.88 -0.3
366,551 + GFF331 0.88 -0.3
366,551 + GFF331 0.88 -0.3
366,551 + GFF331 0.88 +1.0
366,551 + GFF331 0.88 -1.4
366,551 + GFF331 0.88 -0.6
366,552 - GFF331 0.88 +0.6
366,552 - GFF331 0.88 -0.7
366,552 - GFF331 0.88 -2.3
366,552 - GFF331 0.88 -0.8
366,552 - GFF331 0.88 -1.0
366,566 + +0.7
366,567 - -0.1
366,567 - +0.0
366,671 + +1.6
366,672 - -0.0
366,758 - GFF332 0.21 +4.1
366,758 - GFF332 0.21 +0.1
366,835 + GFF332 0.38 +0.2
366,835 + GFF332 0.38 +1.9
366,835 + GFF332 0.38 -0.7
366,835 + GFF332 0.38 -1.2
366,835 + GFF332 0.38 -1.1
366,836 - GFF332 0.38 -0.3
366,877 + GFF332 0.47 +0.4
366,877 + GFF332 0.47 -0.7
366,877 + GFF332 0.47 +0.0
366,877 + GFF332 0.47 +0.4
366,878 - GFF332 0.47 +0.2
366,878 - GFF332 0.47 -0.3
367,093 + +0.4
367,121 - +0.0
367,421 - GFF333 0.64 -0.4
367,548 + -1.0
367,548 + -1.2
367,548 + +0.1
367,548 + -0.5
367,548 + -2.2
367,548 + -1.4
367,548 + -0.6
367,548 + -1.4
367,548 + -0.4
367,548 + +0.1
367,548 + -0.6
367,549 - -0.6
367,549 - -0.5
367,549 - -0.3
367,549 - -0.5
367,549 - +0.3
367,549 - +1.0
367,549 - +1.4
367,549 - -0.8
367,549 - +0.7
367,549 - +1.6
367,549 - +0.4
367,552 + -0.9
367,552 + -0.6
367,552 + +0.4
367,552 + -1.2
367,553 - +0.4
367,553 - -0.3
367,553 - -2.1
367,553 - -0.6
367,553 - -0.1
367,553 - -0.4
367,553 - -1.2
367,553 - -0.5
367,582 + +0.0
367,582 + -0.6
367,645 + GFF334 0.11 -1.5
367,646 - GFF334 0.11 -1.0
367,646 - GFF334 0.11 +0.0
367,843 + GFF334 0.34 +0.0
367,843 + GFF334 0.34 +0.0
367,844 - GFF334 0.34 -0.8
367,844 - GFF334 0.34 -0.1
367,844 - GFF334 0.34 -0.1
367,844 - GFF334 0.34 -0.4

Or see this region's nucleotide sequence