Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3307 and GFF3308 are separated by 176 nucleotides GFF3308 and GFF3309 overlap by 4 nucleotides
GFF3307 - FIG01161751: hypothetical protein, at 130,554 to 132,650
GFF3307
GFF3308 - Inner membrane protein CreD, at 132,827 to 134,290
GFF3308
GFF3309 - Beta-hexosaminidase (EC 3.2.1.52), at 134,287 to 135,579
GFF3309
Position (kb) 132
133
134
135 Strain fitness (log2 ratio) -2
-1
0
1
2 at 132.022 kb on + strand, within GFF3307 at 132.058 kb on + strand, within GFF3307 at 132.058 kb on + strand, within GFF3307 at 132.058 kb on + strand, within GFF3307 at 132.058 kb on + strand, within GFF3307 at 132.059 kb on - strand, within GFF3307 at 132.059 kb on - strand, within GFF3307 at 132.092 kb on - strand, within GFF3307 at 132.211 kb on + strand, within GFF3307 at 132.212 kb on - strand, within GFF3307 at 132.212 kb on - strand, within GFF3307 at 132.212 kb on - strand, within GFF3307 at 132.319 kb on + strand, within GFF3307 at 132.319 kb on + strand, within GFF3307 at 132.320 kb on - strand, within GFF3307 at 132.355 kb on + strand, within GFF3307 at 132.355 kb on + strand, within GFF3307 at 132.355 kb on + strand, within GFF3307 at 132.356 kb on - strand, within GFF3307 at 132.356 kb on - strand, within GFF3307 at 132.356 kb on - strand, within GFF3307 at 132.356 kb on - strand, within GFF3307 at 132.467 kb on - strand at 132.467 kb on - strand at 132.989 kb on + strand, within GFF3308 at 132.989 kb on + strand, within GFF3308 at 132.989 kb on + strand, within GFF3308 at 132.989 kb on + strand, within GFF3308 at 132.989 kb on + strand, within GFF3308 at 132.989 kb on + strand, within GFF3308 at 132.989 kb on + strand, within GFF3308 at 132.989 kb on + strand, within GFF3308 at 132.990 kb on - strand, within GFF3308 at 132.990 kb on - strand, within GFF3308 at 132.990 kb on - strand, within GFF3308 at 133.034 kb on + strand, within GFF3308 at 133.034 kb on + strand, within GFF3308 at 133.035 kb on - strand, within GFF3308 at 133.199 kb on + strand, within GFF3308 at 133.199 kb on + strand, within GFF3308 at 133.200 kb on - strand, within GFF3308 at 133.200 kb on - strand, within GFF3308 at 133.839 kb on - strand, within GFF3308 at 133.865 kb on + strand, within GFF3308 at 133.865 kb on + strand, within GFF3308 at 133.865 kb on + strand, within GFF3308 at 133.865 kb on + strand, within GFF3308 at 133.866 kb on - strand, within GFF3308 at 133.866 kb on - strand, within GFF3308 at 133.866 kb on - strand, within GFF3308 at 133.949 kb on + strand, within GFF3308 at 133.949 kb on + strand, within GFF3308 at 134.031 kb on - strand, within GFF3308 at 134.072 kb on + strand, within GFF3308 at 134.073 kb on - strand, within GFF3308 at 134.138 kb on + strand, within GFF3308 at 134.138 kb on + strand, within GFF3308 at 134.138 kb on + strand, within GFF3308 at 134.138 kb on + strand, within GFF3308 at 134.138 kb on + strand, within GFF3308 at 134.139 kb on - strand, within GFF3308 at 134.139 kb on - strand, within GFF3308 at 134.150 kb on + strand at 134.151 kb on - strand at 134.151 kb on - strand at 134.151 kb on - strand at 134.151 kb on - strand at 134.253 kb on - strand at 134.253 kb on - strand at 134.253 kb on - strand at 134.269 kb on + strand at 134.611 kb on + strand, within GFF3309 at 134.612 kb on - strand, within GFF3309 at 134.899 kb on + strand, within GFF3309 at 134.933 kb on + strand, within GFF3309 at 134.933 kb on + strand, within GFF3309 at 134.933 kb on + strand, within GFF3309 at 134.934 kb on - strand, within GFF3309 at 134.934 kb on - strand, within GFF3309 at 135.060 kb on - strand, within GFF3309
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 132,022 + GFF3307 0.70 +1.9 132,058 + GFF3307 0.72 -0.3 132,058 + GFF3307 0.72 +0.7 132,058 + GFF3307 0.72 +1.9 132,058 + GFF3307 0.72 -1.1 132,059 - GFF3307 0.72 -0.7 132,059 - GFF3307 0.72 +0.1 132,092 - GFF3307 0.73 -0.3 132,211 + GFF3307 0.79 -0.1 132,212 - GFF3307 0.79 -0.4 132,212 - GFF3307 0.79 +0.6 132,212 - GFF3307 0.79 -0.1 132,319 + GFF3307 0.84 +0.1 132,319 + GFF3307 0.84 +1.5 132,320 - GFF3307 0.84 +0.5 132,355 + GFF3307 0.86 -0.2 132,355 + GFF3307 0.86 +1.5 132,355 + GFF3307 0.86 +0.0 132,356 - GFF3307 0.86 +0.1 132,356 - GFF3307 0.86 -0.2 132,356 - GFF3307 0.86 -0.9 132,356 - GFF3307 0.86 -0.3 132,467 - +1.2 132,467 - -0.8 132,989 + GFF3308 0.11 -0.8 132,989 + GFF3308 0.11 -0.5 132,989 + GFF3308 0.11 -0.1 132,989 + GFF3308 0.11 -0.4 132,989 + GFF3308 0.11 +1.9 132,989 + GFF3308 0.11 -0.1 132,989 + GFF3308 0.11 -1.3 132,989 + GFF3308 0.11 +0.6 132,990 - GFF3308 0.11 -1.0 132,990 - GFF3308 0.11 -0.2 132,990 - GFF3308 0.11 +0.1 133,034 + GFF3308 0.14 -0.6 133,034 + GFF3308 0.14 +1.0 133,035 - GFF3308 0.14 -0.9 133,199 + GFF3308 0.25 +0.0 133,199 + GFF3308 0.25 -2.0 133,200 - GFF3308 0.25 -1.5 133,200 - GFF3308 0.25 -0.0 133,839 - GFF3308 0.69 -0.2 133,865 + GFF3308 0.71 -0.3 133,865 + GFF3308 0.71 +0.7 133,865 + GFF3308 0.71 -0.4 133,865 + GFF3308 0.71 -0.6 133,866 - GFF3308 0.71 -1.1 133,866 - GFF3308 0.71 -0.7 133,866 - GFF3308 0.71 -1.1 133,949 + GFF3308 0.77 -1.4 133,949 + GFF3308 0.77 -1.7 134,031 - GFF3308 0.82 -1.0 134,072 + GFF3308 0.85 -0.3 134,073 - GFF3308 0.85 +0.6 134,138 + GFF3308 0.90 -0.3 134,138 + GFF3308 0.90 +0.2 134,138 + GFF3308 0.90 -0.1 134,138 + GFF3308 0.90 +0.2 134,138 + GFF3308 0.90 +1.3 134,139 - GFF3308 0.90 +0.0 134,139 - GFF3308 0.90 -0.9 134,150 + -1.5 134,151 - -1.0 134,151 - +0.1 134,151 - +0.3 134,151 - -0.9 134,253 - +0.4 134,253 - -0.3 134,253 - -1.9 134,269 + +0.6 134,611 + GFF3309 0.25 -0.0 134,612 - GFF3309 0.25 +0.4 134,899 + GFF3309 0.47 -0.2 134,933 + GFF3309 0.50 -0.3 134,933 + GFF3309 0.50 -1.3 134,933 + GFF3309 0.50 +0.1 134,934 - GFF3309 0.50 -0.2 134,934 - GFF3309 0.50 -1.8 135,060 - GFF3309 0.60 -0.2
Or see this region's nucleotide sequence