Strain Fitness in Variovorax sp. SCN45 around GFF3272

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
91,216	+				+0.6
91,216	+				-1.8
91,217	-				-0.6
91,217	-				-0.2
91,218	+				+0.8
91,218	+				-0.8
91,218	+				-1.6
91,218	+				+0.9
91,218	+				-0.2
91,218	+				-0.7
91,218	+				-0.7
91,218	+				+0.0
91,218	+				-0.2
91,218	+				-2.1
91,218	+				-0.3
91,218	+				-0.0
91,218	+				-1.4
91,218	+				+0.6
91,218	+				-0.4
91,218	+				-1.1
91,218	+				-1.5
91,218	+				-1.1
91,218	+				-0.3
91,219	-				+0.3
91,219	-				-0.7
91,219	-				+0.0
91,219	-				-0.4
91,219	-				-2.2
91,219	-				-0.5
91,219	-				-0.5
91,219	-				-0.4
91,219	-				-1.0
91,219	-				+0.9
91,219	-				+0.3
91,219	-				+0.3
91,219	-				-0.4
91,219	-				-1.1
91,219	-				-0.5
91,219	-				+0.7
91,219	-				-1.1
91,219	-				-0.6
91,219	-				-1.3
91,221	-				-0.6
91,256	+				+0.0
91,256	+				-0.1
91,257	-				+0.8
91,257	-				-0.1
91,269	+				+0.9
91,269	+				+0.1
91,269	+				-0.5
91,269	+				-0.3
91,269	+				+0.9
91,269	+				-0.6
91,270	-				-1.5
91,270	-				-0.3
91,270	-				-0.0
91,270	-				+3.5
91,270	-				+1.9
91,270	-				-0.8
91,270	-				-0.3
91,270	-				+0.9
91,275	+				-0.9
91,297	+				-0.6
91,297	+				-0.9
91,297	+				-1.3
91,297	+				-1.3
91,297	+				+0.8
91,297	+				-1.1
91,298	-				-0.1
91,298	-				-0.7
91,298	-				+1.9
91,298	-				-0.3
91,298	-				-1.1
91,363	+				-1.3
91,363	+				-0.2
91,363	+				+0.2
91,363	+				-0.3
91,364	-				-0.2
91,730	+		GFF3272	0.23	-0.8
91,730	+		GFF3272	0.23	-0.4
91,731	-		GFF3272	0.23	-1.9
91,873	+		GFF3272	0.30	-1.5
92,052	-		GFF3272	0.39	-0.1
92,053	+		GFF3272	0.39	-0.4
92,053	+		GFF3272	0.39	-1.9
92,054	-		GFF3272	0.39	-0.1
92,054	-		GFF3272	0.39	-0.3
92,054	-		GFF3272	0.39	+1.2
92,275	+		GFF3272	0.51	-0.8
92,275	+		GFF3272	0.51	-0.1
92,276	-		GFF3272	0.51	-0.6
92,276	-		GFF3272	0.51	-0.6
92,276	-		GFF3272	0.51	+2.3
92,366	+		GFF3272	0.55	-0.1
92,366	+		GFF3272	0.55	-1.0
92,366	+		GFF3272	0.55	+0.3
92,366	+		GFF3272	0.55	-1.8
92,367	-		GFF3272	0.55	-0.7
92,367	-		GFF3272	0.55	-0.8
92,367	-		GFF3272	0.55	-0.7
92,367	-		GFF3272	0.55	+0.9
92,413	+		GFF3272	0.58	-0.8
92,413	+		GFF3272	0.58	+0.9
92,413	+		GFF3272	0.58	-1.5
92,413	+		GFF3272	0.58	-0.8
92,413	+		GFF3272	0.58	-0.3
92,413	+		GFF3272	0.58	-0.1
92,413	+		GFF3272	0.58	-0.6
92,413	+		GFF3272	0.58	-0.0
92,413	+		GFF3272	0.58	-1.2
92,413	+		GFF3272	0.58	-0.1
92,413	+		GFF3272	0.58	+0.7
92,413	+		GFF3272	0.58	+0.4
92,413	+		GFF3272	0.58	-1.5
92,413	+		GFF3272	0.58	+0.3
92,413	+		GFF3272	0.58	+1.1
92,413	+		GFF3272	0.58	-0.8
92,413	+		GFF3272	0.58	-1.3
92,414	-		GFF3272	0.58	-0.9
92,414	-		GFF3272	0.58	-1.5
92,414	-		GFF3272	0.58	+0.3
92,414	-		GFF3272	0.58	+0.2
92,414	-		GFF3272	0.58	-0.2
92,414	-		GFF3272	0.58	-0.6
92,414	-		GFF3272	0.58	-1.4
92,414	-		GFF3272	0.58	+0.2
92,414	-		GFF3272	0.58	+1.0
92,414	-		GFF3272	0.58	-0.1
92,414	-		GFF3272	0.58	-1.0
92,414	-		GFF3272	0.58	+1.2
92,414	-		GFF3272	0.58	-1.0
92,414	-		GFF3272	0.58	-0.4
92,414	-		GFF3272	0.58	-0.2
92,414	-		GFF3272	0.58	-0.8
92,414	-		GFF3272	0.58	-1.1
92,414	-		GFF3272	0.58	+0.1
92,414	-		GFF3272	0.58	+0.0
92,414	-		GFF3272	0.58	-0.5
92,584	+		GFF3272	0.66	+1.3
92,584	+		GFF3272	0.66	+0.7
92,584	+		GFF3272	0.66	+0.1
92,584	+		GFF3272	0.66	+0.3
92,584	+		GFF3272	0.66	+0.2
92,584	+		GFF3272	0.66	-0.8
92,584	+		GFF3272	0.66	+0.5
92,584	+		GFF3272	0.66	-1.1
92,584	+		GFF3272	0.66	-0.2
92,584	+		GFF3272	0.66	-0.7
92,584	+		GFF3272	0.66	-0.3
92,584	+		GFF3272	0.66	-0.7
92,584	+		GFF3272	0.66	+1.9
92,585	-		GFF3272	0.66	-0.4
92,585	-		GFF3272	0.66	-0.8
92,585	-		GFF3272	0.66	-0.7
92,585	-		GFF3272	0.66	-0.4
92,585	-		GFF3272	0.66	-0.7
92,585	-		GFF3272	0.66	-2.4
92,615	+		GFF3272	0.68	-0.9
92,615	+		GFF3272	0.68	-0.6
92,616	-		GFF3272	0.68	-0.4
92,722	+		GFF3272	0.73	-0.7
92,722	+		GFF3272	0.73	+0.3
92,722	+		GFF3272	0.73	+0.2
92,722	+		GFF3272	0.73	-1.1
92,722	+		GFF3272	0.73	-0.9
92,722	+		GFF3272	0.73	-0.5
92,722	+		GFF3272	0.73	-0.3
92,723	-		GFF3272	0.73	-0.4
92,723	-		GFF3272	0.73	+0.8
92,723	-		GFF3272	0.73	-0.5
92,723	-		GFF3272	0.73	-1.7
92,723	-		GFF3272	0.73	-0.1
92,723	-		GFF3272	0.73	-0.6
92,723	-		GFF3272	0.73	+0.5
92,747	-		GFF3272	0.74	+0.0
92,965	+		GFF3272	0.85	-0.7
92,965	+		GFF3272	0.85	-0.2
92,965	+		GFF3272	0.85	-0.4
92,965	+		GFF3272	0.85	-0.4
92,965	+		GFF3272	0.85	-0.3
92,965	+		GFF3272	0.85	-0.8
92,965	+		GFF3272	0.85	+0.5
92,965	+		GFF3272	0.85	-0.2
92,965	+		GFF3272	0.85	-0.4
92,966	-		GFF3272	0.85	-0.5
92,966	-		GFF3272	0.85	+0.7
92,966	-		GFF3272	0.85	-1.1
92,966	-		GFF3272	0.85	-0.7
92,966	-		GFF3272	0.85	+0.1
93,363	+				-0.1
93,363	+				-1.7
93,363	+				-1.4
93,363	+				-0.7
93,363	+				+0.2
93,363	+				-1.2
93,363	+				-0.5
93,363	+				+0.5
93,363	+				+0.7
93,363	+				-0.2
93,363	+				+0.1
93,363	+				-0.9
93,364	-				-1.3
93,364	-				-0.3
93,364	-				-0.3
93,364	-				-0.7
93,364	-				-2.0
93,364	-				-0.7
93,364	-				-0.4
93,364	-				-2.0
93,364	-				-0.5
93,364	-				-0.0
93,364	-				-0.4
93,364	-				-0.0
93,364	-				-0.4
93,571	+		GFF3273	0.31	-0.3
93,750	+		GFF3273	0.50	-1.3
93,750	+		GFF3273	0.50	-0.5
93,750	+		GFF3273	0.50	-0.4
93,751	-		GFF3273	0.50	-0.4
93,751	-		GFF3273	0.50	+0.1
93,751	-		GFF3273	0.50	+0.9
93,942	+		GFF3273	0.71	-1.2
93,942	+		GFF3273	0.71	-1.0
93,943	-		GFF3273	0.71	-0.5
93,943	-		GFF3273	0.71	-0.4
93,943	-		GFF3273	0.71	-0.2
93,943	-		GFF3273	0.71	+0.7
94,221	+				+2.5
94,221	+				-0.5
94,221	+				-0.2
94,221	+				-0.3
94,221	+				-0.8
94,221	+				-1.8
94,221	+				+0.3
94,221	+				-1.1
94,222	-				-0.5
94,222	-				-0.4
94,222	-				+0.9
94,222	-				+0.3
94,222	-				-0.5
94,224	+				-0.6
94,224	+				+1.9
94,224	+				-0.5
94,224	+				-2.1
94,224	+				+0.3
94,224	+				-0.3
94,224	+				-0.2
94,224	+				+0.5
94,224	+				-0.0
94,224	+				-0.4
94,225	-				-0.8
94,225	-				-0.7
94,225	-				-0.3
94,225	-				+0.9
94,231	+				-1.7
94,231	+				-0.4
94,231	+				-0.2
94,231	+				-0.5
94,231	+				-0.5
94,231	+				+0.3
94,231	+				-1.0
94,231	+				-1.0
94,231	+				-0.1
94,232	-				+0.1
94,232	-				-1.6
94,232	-				+0.6
94,232	-				-0.7
94,232	-				+0.9
94,232	-				-0.5
94,232	-				-0.8
94,232	-				-0.5
94,238	+				-0.7
94,238	+				-1.4
94,238	+				-0.8
94,238	+				-1.4
94,238	+				+0.9
94,239	-				-0.1
94,239	-				+0.5
94,239	-				+0.0
94,239	-				-0.8
94,239	-				-0.4
94,239	-				+0.9
94,239	-				-1.4
94,239	-				-1.0
94,239	-				-0.6
94,239	-				+0.3
94,239	-				-0.1