Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3258 and GFF3259 overlap by 29 nucleotides GFF3259 and GFF3260 overlap by 4 nucleotides GFF3260 and GFF3261 are separated by 91 nucleotides GFF3261 and GFF3262 are separated by 33 nucleotides
GFF3258 - hypothetical protein, at 76,364 to 79,288
GFF3258
GFF3259 - Lysophospholipase (EC 3.1.1.5); Monoglyceride lipase (EC 3.1.1.23), at 79,260 to 80,120
GFF3259
GFF3260 - Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases, at 80,117 to 81,628
GFF3260
GFF3261 - FIG003003: hypothetical protein, at 81,720 to 82,499
GFF3261
GFF3262 - Polymer-forming bactofilin, at 82,533 to 83,033
GFF3262
Position (kb) 80
81
82 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 79.348 kb on + strand, within GFF3259 at 79.348 kb on + strand, within GFF3259 at 79.348 kb on + strand, within GFF3259 at 79.348 kb on + strand, within GFF3259 at 79.349 kb on - strand, within GFF3259 at 79.451 kb on - strand, within GFF3259 at 79.510 kb on + strand, within GFF3259 at 79.510 kb on + strand, within GFF3259 at 79.511 kb on - strand, within GFF3259 at 79.511 kb on - strand, within GFF3259 at 79.570 kb on + strand, within GFF3259 at 79.570 kb on + strand, within GFF3259 at 79.603 kb on + strand, within GFF3259 at 79.603 kb on + strand, within GFF3259 at 79.603 kb on + strand, within GFF3259 at 79.603 kb on + strand, within GFF3259 at 79.603 kb on + strand, within GFF3259 at 79.603 kb on + strand, within GFF3259 at 79.603 kb on + strand, within GFF3259 at 79.604 kb on - strand, within GFF3259 at 79.604 kb on - strand, within GFF3259 at 79.604 kb on - strand, within GFF3259 at 79.604 kb on - strand, within GFF3259 at 79.972 kb on + strand, within GFF3259 at 79.973 kb on - strand, within GFF3259 at 80.209 kb on - strand at 80.226 kb on + strand at 80.343 kb on + strand, within GFF3260 at 80.343 kb on + strand, within GFF3260 at 80.344 kb on - strand, within GFF3260 at 80.469 kb on + strand, within GFF3260 at 80.469 kb on + strand, within GFF3260 at 80.469 kb on + strand, within GFF3260 at 80.469 kb on + strand, within GFF3260 at 80.469 kb on + strand, within GFF3260 at 80.565 kb on + strand, within GFF3260 at 80.565 kb on + strand, within GFF3260 at 80.565 kb on + strand, within GFF3260 at 80.566 kb on - strand, within GFF3260 at 80.566 kb on - strand, within GFF3260 at 80.715 kb on + strand, within GFF3260 at 80.716 kb on - strand, within GFF3260 at 80.716 kb on - strand, within GFF3260 at 80.716 kb on - strand, within GFF3260 at 80.716 kb on - strand, within GFF3260 at 80.716 kb on - strand, within GFF3260 at 80.716 kb on - strand, within GFF3260 at 80.739 kb on + strand, within GFF3260 at 80.739 kb on + strand, within GFF3260 at 80.739 kb on + strand, within GFF3260 at 80.739 kb on + strand, within GFF3260 at 80.739 kb on + strand, within GFF3260 at 80.739 kb on + strand, within GFF3260 at 80.739 kb on + strand, within GFF3260 at 80.740 kb on - strand, within GFF3260 at 80.740 kb on - strand, within GFF3260 at 80.740 kb on - strand, within GFF3260 at 80.740 kb on - strand, within GFF3260 at 80.740 kb on - strand, within GFF3260 at 80.997 kb on + strand, within GFF3260 at 80.997 kb on + strand, within GFF3260 at 80.998 kb on - strand, within GFF3260 at 80.998 kb on - strand, within GFF3260 at 80.998 kb on - strand, within GFF3260 at 81.069 kb on + strand, within GFF3260 at 81.069 kb on + strand, within GFF3260 at 81.084 kb on + strand, within GFF3260 at 81.084 kb on + strand, within GFF3260 at 81.084 kb on + strand, within GFF3260 at 81.084 kb on + strand, within GFF3260 at 81.085 kb on - strand, within GFF3260 at 81.085 kb on - strand, within GFF3260 at 81.085 kb on - strand, within GFF3260 at 81.180 kb on + strand, within GFF3260 at 81.180 kb on + strand, within GFF3260 at 81.180 kb on + strand, within GFF3260 at 81.180 kb on + strand, within GFF3260 at 81.181 kb on - strand, within GFF3260 at 81.181 kb on - strand, within GFF3260 at 81.181 kb on - strand, within GFF3260 at 81.190 kb on - strand, within GFF3260 at 81.216 kb on + strand, within GFF3260 at 81.216 kb on + strand, within GFF3260 at 81.217 kb on - strand, within GFF3260 at 81.217 kb on - strand, within GFF3260 at 81.234 kb on + strand, within GFF3260 at 81.234 kb on + strand, within GFF3260 at 81.235 kb on - strand, within GFF3260 at 81.235 kb on - strand, within GFF3260 at 81.235 kb on - strand, within GFF3260 at 81.235 kb on - strand, within GFF3260 at 81.262 kb on + strand, within GFF3260 at 81.262 kb on + strand, within GFF3260 at 81.303 kb on + strand, within GFF3260 at 81.303 kb on + strand, within GFF3260 at 81.303 kb on + strand, within GFF3260 at 81.303 kb on + strand, within GFF3260 at 81.303 kb on + strand, within GFF3260 at 81.303 kb on + strand, within GFF3260 at 81.303 kb on + strand, within GFF3260 at 81.303 kb on + strand, within GFF3260 at 81.303 kb on + strand, within GFF3260 at 81.303 kb on + strand, within GFF3260 at 81.304 kb on - strand, within GFF3260 at 81.304 kb on - strand, within GFF3260 at 81.304 kb on - strand, within GFF3260 at 81.304 kb on - strand, within GFF3260 at 81.304 kb on - strand, within GFF3260 at 81.304 kb on - strand, within GFF3260 at 81.304 kb on - strand, within GFF3260 at 81.516 kb on + strand at 81.516 kb on + strand at 81.516 kb on + strand at 81.516 kb on + strand at 81.516 kb on + strand at 81.516 kb on + strand at 81.516 kb on + strand at 81.517 kb on - strand at 81.517 kb on - strand at 81.517 kb on - strand at 81.517 kb on - strand at 81.689 kb on - strand at 81.755 kb on + strand at 81.755 kb on + strand at 81.756 kb on - strand at 81.756 kb on - strand at 81.756 kb on - strand at 81.771 kb on + strand at 81.771 kb on + strand at 81.771 kb on + strand at 81.772 kb on - strand at 81.772 kb on - strand at 81.772 kb on - strand at 81.772 kb on - strand at 81.772 kb on - strand at 81.772 kb on - strand at 81.772 kb on - strand at 81.772 kb on - strand at 81.772 kb on - strand at 81.772 kb on - strand at 81.772 kb on - strand at 81.795 kb on + strand at 81.795 kb on + strand at 81.796 kb on - strand at 81.796 kb on - strand at 81.831 kb on + strand, within GFF3261 at 81.831 kb on + strand, within GFF3261 at 81.831 kb on + strand, within GFF3261 at 81.831 kb on + strand, within GFF3261 at 81.832 kb on - strand, within GFF3261 at 81.832 kb on - strand, within GFF3261 at 81.873 kb on + strand, within GFF3261 at 81.873 kb on + strand, within GFF3261 at 81.873 kb on + strand, within GFF3261 at 81.873 kb on + strand, within GFF3261 at 81.873 kb on + strand, within GFF3261 at 81.873 kb on + strand, within GFF3261 at 81.873 kb on + strand, within GFF3261 at 81.874 kb on - strand, within GFF3261 at 81.874 kb on - strand, within GFF3261 at 81.876 kb on + strand, within GFF3261 at 81.876 kb on + strand, within GFF3261 at 81.876 kb on + strand, within GFF3261 at 81.876 kb on + strand, within GFF3261 at 81.876 kb on + strand, within GFF3261 at 81.876 kb on + strand, within GFF3261 at 81.876 kb on + strand, within GFF3261 at 81.877 kb on - strand, within GFF3261 at 81.877 kb on - strand, within GFF3261 at 81.877 kb on - strand, within GFF3261 at 81.877 kb on - strand, within GFF3261 at 82.197 kb on + strand, within GFF3261 at 82.198 kb on - strand, within GFF3261 at 82.198 kb on - strand, within GFF3261 at 82.198 kb on - strand, within GFF3261 at 82.198 kb on - strand, within GFF3261 at 82.198 kb on - strand, within GFF3261 at 82.198 kb on - strand, within GFF3261 at 82.332 kb on + strand, within GFF3261 at 82.333 kb on - strand, within GFF3261 at 82.333 kb on - strand, within GFF3261 at 82.413 kb on + strand, within GFF3261 at 82.413 kb on + strand, within GFF3261 at 82.413 kb on + strand, within GFF3261 at 82.601 kb on - strand, within GFF3262
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 79,348 + GFF3259 0.10 +0.2 79,348 + GFF3259 0.10 -1.4 79,348 + GFF3259 0.10 +0.6 79,348 + GFF3259 0.10 -0.3 79,349 - GFF3259 0.10 -1.7 79,451 - GFF3259 0.22 -0.5 79,510 + GFF3259 0.29 -1.1 79,510 + GFF3259 0.29 +0.3 79,511 - GFF3259 0.29 -0.5 79,511 - GFF3259 0.29 +1.3 79,570 + GFF3259 0.36 +0.1 79,570 + GFF3259 0.36 -0.6 79,603 + GFF3259 0.40 -1.8 79,603 + GFF3259 0.40 -1.0 79,603 + GFF3259 0.40 -1.2 79,603 + GFF3259 0.40 -0.2 79,603 + GFF3259 0.40 -0.2 79,603 + GFF3259 0.40 +0.3 79,603 + GFF3259 0.40 +0.1 79,604 - GFF3259 0.40 -0.1 79,604 - GFF3259 0.40 +0.3 79,604 - GFF3259 0.40 +0.1 79,604 - GFF3259 0.40 -2.7 79,972 + GFF3259 0.83 +0.0 79,973 - GFF3259 0.83 +1.9 80,209 - -0.9 80,226 + -0.6 80,343 + GFF3260 0.15 -0.4 80,343 + GFF3260 0.15 -0.1 80,344 - GFF3260 0.15 +0.3 80,469 + GFF3260 0.23 +0.6 80,469 + GFF3260 0.23 -0.8 80,469 + GFF3260 0.23 -0.3 80,469 + GFF3260 0.23 -0.1 80,469 + GFF3260 0.23 +0.2 80,565 + GFF3260 0.30 +0.8 80,565 + GFF3260 0.30 -0.8 80,565 + GFF3260 0.30 -0.7 80,566 - GFF3260 0.30 -1.7 80,566 - GFF3260 0.30 +1.2 80,715 + GFF3260 0.40 -0.6 80,716 - GFF3260 0.40 -0.7 80,716 - GFF3260 0.40 +0.3 80,716 - GFF3260 0.40 -0.6 80,716 - GFF3260 0.40 -0.2 80,716 - GFF3260 0.40 -0.1 80,716 - GFF3260 0.40 -0.0 80,739 + GFF3260 0.41 +0.0 80,739 + GFF3260 0.41 -0.4 80,739 + GFF3260 0.41 +1.5 80,739 + GFF3260 0.41 +0.1 80,739 + GFF3260 0.41 -1.1 80,739 + GFF3260 0.41 -1.0 80,739 + GFF3260 0.41 -0.6 80,740 - GFF3260 0.41 -0.3 80,740 - GFF3260 0.41 -1.1 80,740 - GFF3260 0.41 -0.6 80,740 - GFF3260 0.41 -0.8 80,740 - GFF3260 0.41 +0.2 80,997 + GFF3260 0.58 -0.3 80,997 + GFF3260 0.58 -0.1 80,998 - GFF3260 0.58 +0.1 80,998 - GFF3260 0.58 -0.4 80,998 - GFF3260 0.58 -2.0 81,069 + GFF3260 0.63 -0.5 81,069 + GFF3260 0.63 +0.9 81,084 + GFF3260 0.64 +0.2 81,084 + GFF3260 0.64 -1.1 81,084 + GFF3260 0.64 +0.3 81,084 + GFF3260 0.64 -0.9 81,085 - GFF3260 0.64 -0.7 81,085 - GFF3260 0.64 -0.7 81,085 - GFF3260 0.64 +0.7 81,180 + GFF3260 0.70 -0.3 81,180 + GFF3260 0.70 -0.4 81,180 + GFF3260 0.70 -0.8 81,180 + GFF3260 0.70 +0.4 81,181 - GFF3260 0.70 -0.4 81,181 - GFF3260 0.70 -1.0 81,181 - GFF3260 0.70 -0.0 81,190 - GFF3260 0.71 +0.2 81,216 + GFF3260 0.73 +0.1 81,216 + GFF3260 0.73 +1.0 81,217 - GFF3260 0.73 -0.2 81,217 - GFF3260 0.73 -0.5 81,234 + GFF3260 0.74 -0.5 81,234 + GFF3260 0.74 -1.3 81,235 - GFF3260 0.74 -0.6 81,235 - GFF3260 0.74 -0.2 81,235 - GFF3260 0.74 +0.5 81,235 - GFF3260 0.74 -0.7 81,262 + GFF3260 0.76 +0.7 81,262 + GFF3260 0.76 -0.6 81,303 + GFF3260 0.78 -0.6 81,303 + GFF3260 0.78 +0.1 81,303 + GFF3260 0.78 -0.4 81,303 + GFF3260 0.78 -0.4 81,303 + GFF3260 0.78 -0.5 81,303 + GFF3260 0.78 -0.5 81,303 + GFF3260 0.78 +1.2 81,303 + GFF3260 0.78 -0.2 81,303 + GFF3260 0.78 -1.3 81,303 + GFF3260 0.78 -1.1 81,304 - GFF3260 0.79 -0.4 81,304 - GFF3260 0.79 -0.6 81,304 - GFF3260 0.79 -0.4 81,304 - GFF3260 0.79 -0.7 81,304 - GFF3260 0.79 -0.7 81,304 - GFF3260 0.79 -1.9 81,304 - GFF3260 0.79 +0.4 81,516 + -0.1 81,516 + -0.9 81,516 + -0.1 81,516 + +0.1 81,516 + -0.4 81,516 + -0.2 81,516 + +0.4 81,517 - -1.1 81,517 - +0.7 81,517 - -0.9 81,517 - +0.3 81,689 - +0.2 81,755 + +0.3 81,755 + -1.2 81,756 - -0.5 81,756 - -0.5 81,756 - -0.8 81,771 + -1.3 81,771 + -1.7 81,771 + -0.4 81,772 - -0.4 81,772 - +0.7 81,772 - -0.2 81,772 - +4.1 81,772 - -2.3 81,772 - -0.4 81,772 - +0.2 81,772 - -0.3 81,772 - +0.0 81,772 - +0.1 81,772 - -1.0 81,795 + -0.3 81,795 + -0.9 81,796 - +0.0 81,796 - -0.9 81,831 + GFF3261 0.14 +0.9 81,831 + GFF3261 0.14 -0.4 81,831 + GFF3261 0.14 -0.8 81,831 + GFF3261 0.14 -1.7 81,832 - GFF3261 0.14 -1.0 81,832 - GFF3261 0.14 +0.6 81,873 + GFF3261 0.20 -0.1 81,873 + GFF3261 0.20 +0.3 81,873 + GFF3261 0.20 +0.4 81,873 + GFF3261 0.20 +0.6 81,873 + GFF3261 0.20 -0.8 81,873 + GFF3261 0.20 -0.4 81,873 + GFF3261 0.20 -0.8 81,874 - GFF3261 0.20 -1.0 81,874 - GFF3261 0.20 -0.5 81,876 + GFF3261 0.20 -0.4 81,876 + GFF3261 0.20 +0.3 81,876 + GFF3261 0.20 -0.5 81,876 + GFF3261 0.20 -1.3 81,876 + GFF3261 0.20 -0.9 81,876 + GFF3261 0.20 -0.8 81,876 + GFF3261 0.20 +1.6 81,877 - GFF3261 0.20 -0.6 81,877 - GFF3261 0.20 -0.1 81,877 - GFF3261 0.20 -0.1 81,877 - GFF3261 0.20 -0.9 82,197 + GFF3261 0.61 +0.5 82,198 - GFF3261 0.61 -0.7 82,198 - GFF3261 0.61 -0.1 82,198 - GFF3261 0.61 -0.0 82,198 - GFF3261 0.61 -0.2 82,198 - GFF3261 0.61 -0.7 82,198 - GFF3261 0.61 -1.2 82,332 + GFF3261 0.78 +0.1 82,333 - GFF3261 0.79 +0.3 82,333 - GFF3261 0.79 -0.1 82,413 + GFF3261 0.89 -0.3 82,413 + GFF3261 0.89 -0.7 82,413 + GFF3261 0.89 +0.3 82,601 - GFF3262 0.14 +0.9
Or see this region's nucleotide sequence