Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3187 and GFF3188 are separated by 79 nucleotides GFF3188 and GFF3189 overlap by 11 nucleotides GFF3189 and GFF3190 are separated by 635 nucleotides
GFF3187 - hypothetical protein, at 2,043 to 4,073
GFF3187
GFF3188 - hypothetical protein, at 4,153 to 4,719
GFF3188
GFF3189 - hypothetical protein, at 4,709 to 5,812
GFF3189
GFF3190 - FIG01046500: hypothetical protein, at 6,448 to 7,791
GFF3190
Position (kb) 4
5
6 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 3.949 kb on + strand at 3.949 kb on + strand at 3.949 kb on + strand at 3.949 kb on + strand at 3.949 kb on + strand at 3.949 kb on + strand at 3.974 kb on + strand at 3.975 kb on - strand at 3.984 kb on - strand at 3.984 kb on - strand at 3.984 kb on - strand at 4.006 kb on - strand at 4.027 kb on + strand at 4.027 kb on + strand at 4.027 kb on + strand at 4.027 kb on + strand at 4.028 kb on - strand at 4.028 kb on - strand at 4.028 kb on - strand at 4.028 kb on - strand at 4.028 kb on - strand at 4.145 kb on - strand at 4.186 kb on + strand at 4.264 kb on + strand, within GFF3188 at 4.265 kb on - strand, within GFF3188 at 4.295 kb on + strand, within GFF3188 at 4.295 kb on + strand, within GFF3188 at 4.295 kb on + strand, within GFF3188 at 4.296 kb on - strand, within GFF3188 at 4.296 kb on - strand, within GFF3188 at 4.296 kb on - strand, within GFF3188 at 4.296 kb on - strand, within GFF3188 at 4.296 kb on - strand, within GFF3188 at 4.336 kb on + strand, within GFF3188 at 4.423 kb on + strand, within GFF3188 at 4.423 kb on + strand, within GFF3188 at 4.424 kb on - strand, within GFF3188 at 4.424 kb on - strand, within GFF3188 at 4.444 kb on - strand, within GFF3188 at 4.483 kb on + strand, within GFF3188 at 4.484 kb on - strand, within GFF3188 at 4.485 kb on + strand, within GFF3188 at 4.485 kb on + strand, within GFF3188 at 4.485 kb on + strand, within GFF3188 at 4.485 kb on + strand, within GFF3188 at 4.485 kb on + strand, within GFF3188 at 4.485 kb on + strand, within GFF3188 at 4.486 kb on - strand, within GFF3188 at 4.486 kb on - strand, within GFF3188 at 4.486 kb on - strand, within GFF3188 at 4.486 kb on - strand, within GFF3188 at 4.486 kb on - strand, within GFF3188 at 4.520 kb on - strand, within GFF3188 at 4.678 kb on + strand at 4.678 kb on + strand at 4.679 kb on - strand at 4.679 kb on - strand at 4.679 kb on - strand at 4.737 kb on + strand at 4.737 kb on + strand at 4.737 kb on + strand at 4.737 kb on + strand at 4.737 kb on + strand at 4.738 kb on - strand at 4.768 kb on + strand at 4.768 kb on + strand at 4.768 kb on + strand at 4.769 kb on - strand at 4.769 kb on - strand at 4.809 kb on + strand at 4.810 kb on - strand at 4.965 kb on + strand, within GFF3189 at 4.966 kb on - strand, within GFF3189 at 4.966 kb on - strand, within GFF3189 at 4.966 kb on - strand, within GFF3189 at 4.966 kb on - strand, within GFF3189 at 4.975 kb on + strand, within GFF3189 at 4.975 kb on + strand, within GFF3189 at 4.975 kb on + strand, within GFF3189 at 4.975 kb on + strand, within GFF3189 at 4.976 kb on - strand, within GFF3189 at 4.978 kb on + strand, within GFF3189 at 4.978 kb on + strand, within GFF3189 at 4.979 kb on - strand, within GFF3189 at 5.023 kb on + strand, within GFF3189 at 5.023 kb on + strand, within GFF3189 at 5.024 kb on - strand, within GFF3189 at 5.024 kb on - strand, within GFF3189 at 5.064 kb on + strand, within GFF3189 at 5.114 kb on + strand, within GFF3189 at 5.114 kb on + strand, within GFF3189 at 5.114 kb on + strand, within GFF3189 at 5.114 kb on + strand, within GFF3189 at 5.114 kb on + strand, within GFF3189 at 5.114 kb on + strand, within GFF3189 at 5.114 kb on + strand, within GFF3189 at 5.115 kb on - strand, within GFF3189 at 5.115 kb on - strand, within GFF3189 at 5.115 kb on - strand, within GFF3189 at 5.115 kb on - strand, within GFF3189 at 5.115 kb on - strand, within GFF3189 at 5.147 kb on + strand, within GFF3189 at 5.147 kb on + strand, within GFF3189 at 5.147 kb on + strand, within GFF3189 at 5.147 kb on + strand, within GFF3189 at 5.147 kb on + strand, within GFF3189 at 5.147 kb on + strand, within GFF3189 at 5.147 kb on + strand, within GFF3189 at 5.148 kb on - strand, within GFF3189 at 5.148 kb on - strand, within GFF3189 at 5.184 kb on - strand, within GFF3189 at 5.184 kb on - strand, within GFF3189 at 5.246 kb on + strand, within GFF3189 at 5.247 kb on - strand, within GFF3189 at 5.275 kb on + strand, within GFF3189 at 5.275 kb on + strand, within GFF3189 at 5.275 kb on + strand, within GFF3189 at 5.276 kb on - strand, within GFF3189 at 5.276 kb on - strand, within GFF3189 at 5.474 kb on + strand, within GFF3189 at 5.474 kb on + strand, within GFF3189 at 5.474 kb on + strand, within GFF3189 at 5.474 kb on + strand, within GFF3189 at 5.474 kb on + strand, within GFF3189 at 5.474 kb on + strand, within GFF3189 at 5.475 kb on - strand, within GFF3189 at 5.475 kb on - strand, within GFF3189 at 5.496 kb on + strand, within GFF3189 at 5.497 kb on - strand, within GFF3189 at 5.497 kb on - strand, within GFF3189 at 5.534 kb on + strand, within GFF3189 at 5.534 kb on + strand, within GFF3189 at 5.535 kb on - strand, within GFF3189 at 5.605 kb on + strand, within GFF3189 at 5.620 kb on + strand, within GFF3189 at 5.620 kb on + strand, within GFF3189 at 5.620 kb on + strand, within GFF3189 at 5.638 kb on + strand, within GFF3189 at 5.677 kb on - strand, within GFF3189 at 5.716 kb on + strand at 5.717 kb on - strand at 5.726 kb on + strand at 5.726 kb on + strand at 5.726 kb on + strand at 5.726 kb on + strand at 5.727 kb on - strand at 5.727 kb on - strand at 5.727 kb on - strand at 5.727 kb on - strand at 5.825 kb on + strand at 5.825 kb on + strand at 5.825 kb on + strand at 5.825 kb on + strand at 5.825 kb on + strand at 5.825 kb on + strand at 5.826 kb on - strand at 5.826 kb on - strand at 5.826 kb on - strand at 5.826 kb on - strand at 5.826 kb on - strand at 5.826 kb on - strand at 5.826 kb on - strand at 5.870 kb on + strand at 5.870 kb on + strand at 5.871 kb on - strand at 5.927 kb on + strand at 5.927 kb on + strand at 5.927 kb on + strand at 5.927 kb on + strand at 5.927 kb on + strand at 5.927 kb on + strand at 5.927 kb on + strand at 5.927 kb on + strand at 5.928 kb on - strand at 5.928 kb on - strand at 5.928 kb on - strand at 6.022 kb on + strand at 6.023 kb on - strand at 6.023 kb on - strand at 6.091 kb on - strand at 6.091 kb on - strand at 6.192 kb on + strand at 6.193 kb on - strand at 6.193 kb on - strand at 6.207 kb on + strand at 6.208 kb on - strand at 6.281 kb on - strand at 6.336 kb on + strand at 6.336 kb on + strand at 6.336 kb on + strand at 6.336 kb on + strand at 6.336 kb on + strand at 6.336 kb on + strand at 6.336 kb on + strand at 6.336 kb on + strand at 6.337 kb on - strand at 6.337 kb on - strand at 6.337 kb on - strand at 6.401 kb on - strand at 6.401 kb on - strand at 6.413 kb on - strand at 6.430 kb on + strand at 6.435 kb on + strand at 6.435 kb on + strand at 6.435 kb on + strand at 6.436 kb on - strand at 6.436 kb on - strand at 6.469 kb on + strand at 6.469 kb on + strand at 6.469 kb on + strand at 6.746 kb on + strand, within GFF3190 at 6.747 kb on - strand, within GFF3190 at 6.747 kb on - strand, within GFF3190
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 3,949 + -0.3 3,949 + -1.7 3,949 + +1.2 3,949 + -0.3 3,949 + -0.4 3,949 + +3.4 3,974 + -0.4 3,975 - -0.4 3,984 - -0.5 3,984 - -0.3 3,984 - +0.6 4,006 - -0.3 4,027 + +0.1 4,027 + -0.5 4,027 + +0.0 4,027 + -1.2 4,028 - -1.3 4,028 - -0.3 4,028 - +0.2 4,028 - -0.1 4,028 - -0.1 4,145 - +0.1 4,186 + -0.6 4,264 + GFF3188 0.20 -0.7 4,265 - GFF3188 0.20 -0.6 4,295 + GFF3188 0.25 -0.2 4,295 + GFF3188 0.25 -0.2 4,295 + GFF3188 0.25 +0.1 4,296 - GFF3188 0.25 -1.5 4,296 - GFF3188 0.25 -0.4 4,296 - GFF3188 0.25 +1.6 4,296 - GFF3188 0.25 +0.2 4,296 - GFF3188 0.25 -0.0 4,336 + GFF3188 0.32 -1.4 4,423 + GFF3188 0.48 -0.7 4,423 + GFF3188 0.48 -0.5 4,424 - GFF3188 0.48 -0.5 4,424 - GFF3188 0.48 -0.1 4,444 - GFF3188 0.51 +0.4 4,483 + GFF3188 0.58 +0.9 4,484 - GFF3188 0.58 +0.9 4,485 + GFF3188 0.59 -1.3 4,485 + GFF3188 0.59 +0.8 4,485 + GFF3188 0.59 -0.1 4,485 + GFF3188 0.59 -0.2 4,485 + GFF3188 0.59 -0.4 4,485 + GFF3188 0.59 +0.3 4,486 - GFF3188 0.59 +0.0 4,486 - GFF3188 0.59 -0.9 4,486 - GFF3188 0.59 -0.7 4,486 - GFF3188 0.59 -1.9 4,486 - GFF3188 0.59 -0.8 4,520 - GFF3188 0.65 -2.0 4,678 + -0.5 4,678 + -1.2 4,679 - +0.6 4,679 - -0.6 4,679 - -0.1 4,737 + -0.7 4,737 + +0.5 4,737 + +0.2 4,737 + -0.3 4,737 + +0.8 4,738 - +0.2 4,768 + +0.6 4,768 + -0.0 4,768 + +0.0 4,769 - -0.8 4,769 - +0.7 4,809 + +2.9 4,810 - +0.3 4,965 + GFF3189 0.23 -0.5 4,966 - GFF3189 0.23 -0.7 4,966 - GFF3189 0.23 +2.8 4,966 - GFF3189 0.23 -0.2 4,966 - GFF3189 0.23 -1.6 4,975 + GFF3189 0.24 +0.1 4,975 + GFF3189 0.24 -0.7 4,975 + GFF3189 0.24 +1.9 4,975 + GFF3189 0.24 -0.1 4,976 - GFF3189 0.24 -0.1 4,978 + GFF3189 0.24 -0.9 4,978 + GFF3189 0.24 +0.6 4,979 - GFF3189 0.24 -0.6 5,023 + GFF3189 0.28 +0.3 5,023 + GFF3189 0.28 +0.2 5,024 - GFF3189 0.29 -1.8 5,024 - GFF3189 0.29 -0.1 5,064 + GFF3189 0.32 +0.1 5,114 + GFF3189 0.37 -0.3 5,114 + GFF3189 0.37 -0.4 5,114 + GFF3189 0.37 -0.4 5,114 + GFF3189 0.37 -0.2 5,114 + GFF3189 0.37 -0.6 5,114 + GFF3189 0.37 -1.2 5,114 + GFF3189 0.37 -0.8 5,115 - GFF3189 0.37 -0.8 5,115 - GFF3189 0.37 -0.1 5,115 - GFF3189 0.37 -0.5 5,115 - GFF3189 0.37 -0.6 5,115 - GFF3189 0.37 -0.7 5,147 + GFF3189 0.40 -0.3 5,147 + GFF3189 0.40 +0.0 5,147 + GFF3189 0.40 +0.2 5,147 + GFF3189 0.40 -0.0 5,147 + GFF3189 0.40 -0.7 5,147 + GFF3189 0.40 -0.5 5,147 + GFF3189 0.40 +0.3 5,148 - GFF3189 0.40 -0.7 5,148 - GFF3189 0.40 -0.3 5,184 - GFF3189 0.43 -0.7 5,184 - GFF3189 0.43 +0.6 5,246 + GFF3189 0.49 -0.1 5,247 - GFF3189 0.49 -0.3 5,275 + GFF3189 0.51 -0.4 5,275 + GFF3189 0.51 +0.4 5,275 + GFF3189 0.51 -0.9 5,276 - GFF3189 0.51 -0.3 5,276 - GFF3189 0.51 -0.3 5,474 + GFF3189 0.69 -0.7 5,474 + GFF3189 0.69 +0.3 5,474 + GFF3189 0.69 -0.6 5,474 + GFF3189 0.69 -0.6 5,474 + GFF3189 0.69 -0.5 5,474 + GFF3189 0.69 -1.5 5,475 - GFF3189 0.69 +0.1 5,475 - GFF3189 0.69 +0.1 5,496 + GFF3189 0.71 +1.2 5,497 - GFF3189 0.71 -0.3 5,497 - GFF3189 0.71 +1.6 5,534 + GFF3189 0.75 +1.9 5,534 + GFF3189 0.75 -1.5 5,535 - GFF3189 0.75 +2.4 5,605 + GFF3189 0.81 -0.7 5,620 + GFF3189 0.83 +0.1 5,620 + GFF3189 0.83 -0.5 5,620 + GFF3189 0.83 -0.8 5,638 + GFF3189 0.84 -0.1 5,677 - GFF3189 0.88 -0.4 5,716 + -0.7 5,717 - -0.3 5,726 + +0.3 5,726 + -0.1 5,726 + -0.8 5,726 + +0.1 5,727 - +1.0 5,727 - +0.0 5,727 - -1.0 5,727 - +0.4 5,825 + +0.2 5,825 + -0.8 5,825 + -1.1 5,825 + +0.4 5,825 + -0.5 5,825 + +0.1 5,826 - -0.2 5,826 - -0.7 5,826 - -1.1 5,826 - -0.6 5,826 - +1.3 5,826 - -0.3 5,826 - -0.7 5,870 + +0.1 5,870 + -0.7 5,871 - -0.2 5,927 + -0.8 5,927 + +0.6 5,927 + -0.6 5,927 + -1.4 5,927 + -0.5 5,927 + -0.7 5,927 + +0.7 5,927 + -1.2 5,928 - -0.2 5,928 - -0.9 5,928 - +0.1 6,022 + +0.3 6,023 - -0.1 6,023 - +0.2 6,091 - -0.4 6,091 - -0.7 6,192 + -0.8 6,193 - +0.7 6,193 - -0.3 6,207 + -0.6 6,208 - -0.3 6,281 - -0.4 6,336 + +0.3 6,336 + +0.6 6,336 + -0.1 6,336 + -0.4 6,336 + -0.8 6,336 + -1.1 6,336 + -0.1 6,336 + -1.0 6,337 - -2.3 6,337 - -0.8 6,337 - -0.8 6,401 - -0.5 6,401 - -0.6 6,413 - +0.2 6,430 + -1.8 6,435 + -1.1 6,435 + +0.1 6,435 + -0.4 6,436 - -0.5 6,436 - -1.4 6,469 + +0.3 6,469 + +1.3 6,469 + +0.1 6,746 + GFF3190 0.22 -0.2 6,747 - GFF3190 0.22 +0.3 6,747 - GFF3190 0.22 -0.6
Or see this region's nucleotide sequence