Strain Fitness in Variovorax sp. SCN45 around GFF314

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF312 and GFF313 are separated by 47 nucleotidesGFF313 and GFF314 are separated by 19 nucleotidesGFF314 and GFF315 overlap by 1 nucleotides GFF312 - FIG021862: membrane protein, exporter, at 344,144 to 346,486 GFF312 GFF313 - FIG027190: Putative transmembrane protein, at 346,534 to 347,133 GFF313 GFF314 - Acyltransferase, at 347,153 to 348,175 GFF314 GFF315 - FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase, at 348,175 to 349,887 GFF315 Position (kb) 347 348 349Strain fitness (log2 ratio) -2 -1 0 1 2at 346.173 kb on + strand, within GFF312at 346.173 kb on + strand, within GFF312at 346.174 kb on - strand, within GFF312at 346.775 kb on + strand, within GFF313at 346.775 kb on + strand, within GFF313at 346.776 kb on - strand, within GFF313at 347.199 kb on + strandat 347.199 kb on + strandat 347.199 kb on + strandat 347.199 kb on + strandat 347.199 kb on + strandat 347.199 kb on + strandat 347.200 kb on - strandat 347.200 kb on - strandat 347.200 kb on - strandat 347.238 kb on + strandat 347.238 kb on + strandat 347.238 kb on + strandat 347.238 kb on + strandat 347.238 kb on + strandat 347.238 kb on + strandat 347.238 kb on + strandat 347.239 kb on - strandat 347.239 kb on - strandat 347.239 kb on - strandat 347.239 kb on - strandat 347.239 kb on - strandat 347.239 kb on - strandat 347.239 kb on - strandat 347.239 kb on - strandat 347.239 kb on - strandat 347.239 kb on - strandat 347.332 kb on - strand, within GFF314at 347.332 kb on - strand, within GFF314at 347.349 kb on + strand, within GFF314at 347.652 kb on + strand, within GFF314at 347.652 kb on + strand, within GFF314at 347.653 kb on - strand, within GFF314at 347.653 kb on - strand, within GFF314at 347.835 kb on + strand, within GFF314at 347.835 kb on + strand, within GFF314at 347.836 kb on - strand, within GFF314at 347.925 kb on + strand, within GFF314at 347.926 kb on - strand, within GFF314at 347.926 kb on - strand, within GFF314at 347.970 kb on + strand, within GFF314at 347.970 kb on + strand, within GFF314at 347.971 kb on - strand, within GFF314at 348.248 kb on - strandat 348.248 kb on - strandat 348.764 kb on + strand, within GFF315at 348.764 kb on + strand, within GFF315at 348.764 kb on + strand, within GFF315at 348.764 kb on + strand, within GFF315at 348.764 kb on + strand, within GFF315at 348.764 kb on + strand, within GFF315at 348.764 kb on + strand, within GFF315at 348.764 kb on + strand, within GFF315at 348.764 kb on + strand, within GFF315at 348.765 kb on - strand, within GFF315at 348.765 kb on - strand, within GFF315at 348.765 kb on - strand, within GFF315at 348.765 kb on - strand, within GFF315at 348.765 kb on - strand, within GFF315at 348.765 kb on - strand, within GFF315at 349.031 kb on + strand, within GFF315at 349.031 kb on + strand, within GFF315at 349.031 kb on + strand, within GFF315at 349.032 kb on - strand, within GFF315at 349.032 kb on - strand, within GFF315at 349.032 kb on - strand, within GFF315at 349.032 kb on - strand, within GFF315at 349.032 kb on - strand, within GFF315at 349.032 kb on - strand, within GFF315at 349.032 kb on - strand, within GFF315at 349.032 kb on - strand, within GFF315

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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346,173 + GFF312 0.87 +0.1
346,173 + GFF312 0.87 -0.1
346,174 - GFF312 0.87 +0.4
346,775 + GFF313 0.40 -1.2
346,775 + GFF313 0.40 +0.0
346,776 - GFF313 0.40 -0.8
347,199 + -0.3
347,199 + -0.4
347,199 + +0.5
347,199 + -0.4
347,199 + +0.6
347,199 + -0.8
347,200 - +2.0
347,200 - -0.0
347,200 - -0.6
347,238 + -0.3
347,238 + +0.2
347,238 + -0.2
347,238 + +0.0
347,238 + +0.4
347,238 + -0.3
347,238 + +0.0
347,239 - +0.4
347,239 - +0.3
347,239 - +0.2
347,239 - -0.6
347,239 - +0.3
347,239 - +0.3
347,239 - +0.7
347,239 - +0.3
347,239 - +0.7
347,239 - +0.3
347,332 - GFF314 0.17 +1.0
347,332 - GFF314 0.17 -0.2
347,349 + GFF314 0.19 -0.5
347,652 + GFF314 0.49 +1.0
347,652 + GFF314 0.49 +0.0
347,653 - GFF314 0.49 -0.2
347,653 - GFF314 0.49 -0.8
347,835 + GFF314 0.67 +0.8
347,835 + GFF314 0.67 -1.0
347,836 - GFF314 0.67 +1.0
347,925 + GFF314 0.75 +0.3
347,926 - GFF314 0.76 +1.8
347,926 - GFF314 0.76 +1.4
347,970 + GFF314 0.80 +1.3
347,970 + GFF314 0.80 -0.3
347,971 - GFF314 0.80 +2.0
348,248 - +0.0
348,248 - -1.0
348,764 + GFF315 0.34 -0.4
348,764 + GFF315 0.34 +0.0
348,764 + GFF315 0.34 -0.4
348,764 + GFF315 0.34 -0.7
348,764 + GFF315 0.34 -0.8
348,764 + GFF315 0.34 -1.4
348,764 + GFF315 0.34 +0.3
348,764 + GFF315 0.34 -0.9
348,764 + GFF315 0.34 +0.4
348,765 - GFF315 0.34 +1.0
348,765 - GFF315 0.34 -0.7
348,765 - GFF315 0.34 +0.1
348,765 - GFF315 0.34 -1.4
348,765 - GFF315 0.34 +0.7
348,765 - GFF315 0.34 +1.2
349,031 + GFF315 0.50 +1.0
349,031 + GFF315 0.50 -2.3
349,031 + GFF315 0.50 -1.9
349,032 - GFF315 0.50 -0.3
349,032 - GFF315 0.50 -0.4
349,032 - GFF315 0.50 -1.2
349,032 - GFF315 0.50 +0.3
349,032 - GFF315 0.50 +1.4
349,032 - GFF315 0.50 +0.0
349,032 - GFF315 0.50 -2.2
349,032 - GFF315 0.50 +0.1

Or see this region's nucleotide sequence