Strain Fitness in Variovorax sp. SCN45 around GFF313

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF312 and GFF313 are separated by 47 nucleotidesGFF313 and GFF314 are separated by 19 nucleotides GFF312 - FIG021862: membrane protein, exporter, at 344,144 to 346,486 GFF312 GFF313 - FIG027190: Putative transmembrane protein, at 346,534 to 347,133 GFF313 GFF314 - Acyltransferase, at 347,153 to 348,175 GFF314 Position (kb) 346 347 348Strain fitness (log2 ratio) -2 -1 0 1 2at 345.549 kb on + strand, within GFF312at 345.549 kb on + strand, within GFF312at 345.549 kb on + strand, within GFF312at 345.549 kb on + strand, within GFF312at 345.549 kb on + strand, within GFF312at 345.549 kb on + strand, within GFF312at 345.549 kb on + strand, within GFF312at 345.550 kb on - strand, within GFF312at 345.550 kb on - strand, within GFF312at 345.550 kb on - strand, within GFF312at 345.550 kb on - strand, within GFF312at 345.552 kb on + strand, within GFF312at 345.552 kb on + strand, within GFF312at 345.552 kb on + strand, within GFF312at 345.552 kb on + strand, within GFF312at 345.552 kb on + strand, within GFF312at 345.552 kb on + strand, within GFF312at 345.552 kb on + strand, within GFF312at 345.552 kb on + strand, within GFF312at 345.552 kb on + strand, within GFF312at 345.552 kb on + strand, within GFF312at 345.553 kb on - strand, within GFF312at 345.553 kb on - strand, within GFF312at 345.553 kb on - strand, within GFF312at 345.553 kb on - strand, within GFF312at 345.553 kb on - strand, within GFF312at 345.553 kb on - strand, within GFF312at 345.553 kb on - strand, within GFF312at 345.553 kb on - strand, within GFF312at 345.553 kb on - strand, within GFF312at 345.553 kb on - strand, within GFF312at 345.553 kb on - strand, within GFF312at 345.553 kb on - strand, within GFF312at 345.553 kb on - strand, within GFF312at 345.553 kb on - strand, within GFF312at 345.553 kb on - strand, within GFF312at 345.561 kb on + strand, within GFF312at 345.561 kb on + strand, within GFF312at 345.562 kb on - strand, within GFF312at 345.562 kb on - strand, within GFF312at 345.867 kb on + strand, within GFF312at 345.868 kb on - strand, within GFF312at 346.173 kb on + strand, within GFF312at 346.173 kb on + strand, within GFF312at 346.174 kb on - strand, within GFF312at 346.775 kb on + strand, within GFF313at 346.775 kb on + strand, within GFF313at 346.776 kb on - strand, within GFF313at 347.199 kb on + strandat 347.199 kb on + strandat 347.199 kb on + strandat 347.199 kb on + strandat 347.199 kb on + strandat 347.199 kb on + strandat 347.200 kb on - strandat 347.200 kb on - strandat 347.200 kb on - strandat 347.238 kb on + strandat 347.238 kb on + strandat 347.238 kb on + strandat 347.238 kb on + strandat 347.238 kb on + strandat 347.238 kb on + strandat 347.238 kb on + strandat 347.239 kb on - strandat 347.239 kb on - strandat 347.239 kb on - strandat 347.239 kb on - strandat 347.239 kb on - strandat 347.239 kb on - strandat 347.239 kb on - strandat 347.239 kb on - strandat 347.239 kb on - strandat 347.239 kb on - strandat 347.332 kb on - strand, within GFF314at 347.332 kb on - strand, within GFF314at 347.349 kb on + strand, within GFF314at 347.652 kb on + strand, within GFF314at 347.652 kb on + strand, within GFF314at 347.653 kb on - strand, within GFF314at 347.653 kb on - strand, within GFF314at 347.835 kb on + strand, within GFF314at 347.835 kb on + strand, within GFF314at 347.836 kb on - strand, within GFF314at 347.925 kb on + strand, within GFF314at 347.926 kb on - strand, within GFF314at 347.926 kb on - strand, within GFF314at 347.970 kb on + strand, within GFF314at 347.970 kb on + strand, within GFF314at 347.971 kb on - strand, within GFF314

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
345,549 + GFF312 0.60 -0.6
345,549 + GFF312 0.60 -0.7
345,549 + GFF312 0.60 -1.4
345,549 + GFF312 0.60 +0.4
345,549 + GFF312 0.60 +1.6
345,549 + GFF312 0.60 -0.5
345,549 + GFF312 0.60 +2.0
345,550 - GFF312 0.60 -0.6
345,550 - GFF312 0.60 +0.8
345,550 - GFF312 0.60 -1.2
345,550 - GFF312 0.60 -0.2
345,552 + GFF312 0.60 -1.7
345,552 + GFF312 0.60 -1.4
345,552 + GFF312 0.60 -0.4
345,552 + GFF312 0.60 -0.5
345,552 + GFF312 0.60 +0.1
345,552 + GFF312 0.60 +0.4
345,552 + GFF312 0.60 -0.1
345,552 + GFF312 0.60 +0.8
345,552 + GFF312 0.60 -0.3
345,552 + GFF312 0.60 -0.9
345,553 - GFF312 0.60 -0.6
345,553 - GFF312 0.60 +0.7
345,553 - GFF312 0.60 +0.0
345,553 - GFF312 0.60 -0.6
345,553 - GFF312 0.60 -1.2
345,553 - GFF312 0.60 +0.8
345,553 - GFF312 0.60 +0.2
345,553 - GFF312 0.60 -0.7
345,553 - GFF312 0.60 -0.6
345,553 - GFF312 0.60 -0.3
345,553 - GFF312 0.60 -0.8
345,553 - GFF312 0.60 -0.5
345,553 - GFF312 0.60 -2.0
345,553 - GFF312 0.60 +1.4
345,553 - GFF312 0.60 -0.3
345,561 + GFF312 0.60 +0.4
345,561 + GFF312 0.60 +0.2
345,562 - GFF312 0.61 -1.6
345,562 - GFF312 0.61 +1.3
345,867 + GFF312 0.74 -0.7
345,868 - GFF312 0.74 -0.3
346,173 + GFF312 0.87 +0.1
346,173 + GFF312 0.87 -0.1
346,174 - GFF312 0.87 +0.4
346,775 + GFF313 0.40 -1.2
346,775 + GFF313 0.40 +0.0
346,776 - GFF313 0.40 -0.8
347,199 + -0.3
347,199 + -0.4
347,199 + +0.5
347,199 + -0.4
347,199 + +0.6
347,199 + -0.8
347,200 - +2.0
347,200 - -0.0
347,200 - -0.6
347,238 + -0.3
347,238 + +0.2
347,238 + -0.2
347,238 + +0.0
347,238 + +0.4
347,238 + -0.3
347,238 + +0.0
347,239 - +0.4
347,239 - +0.3
347,239 - +0.2
347,239 - -0.6
347,239 - +0.3
347,239 - +0.3
347,239 - +0.7
347,239 - +0.3
347,239 - +0.7
347,239 - +0.3
347,332 - GFF314 0.17 +1.0
347,332 - GFF314 0.17 -0.2
347,349 + GFF314 0.19 -0.5
347,652 + GFF314 0.49 +1.0
347,652 + GFF314 0.49 +0.0
347,653 - GFF314 0.49 -0.2
347,653 - GFF314 0.49 -0.8
347,835 + GFF314 0.67 +0.8
347,835 + GFF314 0.67 -1.0
347,836 - GFF314 0.67 +1.0
347,925 + GFF314 0.75 +0.3
347,926 - GFF314 0.76 +1.8
347,926 - GFF314 0.76 +1.4
347,970 + GFF314 0.80 +1.3
347,970 + GFF314 0.80 -0.3
347,971 - GFF314 0.80 +2.0

Or see this region's nucleotide sequence